LOCUS       XM_006244483            2431 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to RIKEN cDNA B430306N03 gene
            (RGD1307182), transcript variant X1, mRNA.
ACCESSION   XM_006244483
VERSION     XM_006244483.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006244483.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006244483.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2431
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2431
                     /gene="RGD1307182"
                     /note="similar to RIKEN cDNA B430306N03 gene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 10 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     99 samples with support for all annotated introns"
                     /db_xref="GeneID:316207"
                     /db_xref="RGD:1307182"
     CDS             332..1186
                     /gene="RGD1307182"
                     /codon_start=1
                     /product="trem-like transcript 4 protein isoform X1"
                     /protein_id="XP_006244545.2"
                     /db_xref="GeneID:316207"
                     /db_xref="RGD:1307182"
                     /translation="MAWEATYLLSSMLLLLLASGSWAQDPEVLQTLEGKTVSVTCKYN
                     PGYHFYEKTWCKKTSEDTCRPLASSVSRGARKLRFSIQEDSWFSFFNVTMTELKTADS
                     GIYHCGFFGNYRNVINILKTIRLVVSKASAPHTTTRMTTALASTHSPVIDSSPDKPMW
                     KVIIAGVVVATLLALGLVILVVLYLKKAREKAQNVGNKCHHIYEDFSGQKEETTNFNQ
                     QVLSSEDTENICYASLIHLNHVSPQDSQYRNTQPSGDLILSVEYASISRNGLGSSKSN
                     AQEVETRD"
ORIGIN      
        1 gggaggagaa atgagcatcc tcttacttca ctttcctcag gctttctcag ccctcagccc
       61 tggccttatg aggcaggaga tcacagagtc tctgagagcc tttacctagt tcagtacagg
      121 gacctagact caaagcctgt agctggagga tacacaggac cacactggcc ttgcctagct
      181 tccctcttgt ccacagcttg tctccggctt cctcagcagt tcatgcagga ctggctgtgg
      241 tggctcctga atcctgccca ggactgctct cctctcttta gagcatccct ccattcttgc
      301 tcccacccta gctgaggagg agaactgaac gatggcctgg gaggccacat acctgctctc
      361 ctcaatgctg ctgctgctcc tggcctcagg ctcctgggca caggacccag aggtacttca
      421 aacactggag ggcaagactg tttctgtgac atgcaagtat aatcctggat accacttcta
      481 tgagaagacc tggtgtaaga aaacatcaga ggacacttgt cgacctttag cgtcgagtgt
      541 cagcagaggt gccaggaagc taagattctc catccaggaa gattcttggt tcagcttctt
      601 caatgtcacc atgactgagc tcaagacggc cgactcaggc atctatcact gtgggttctt
      661 tggaaattat agaaacgtca tcaatattct caaaactatc cgcctggtgg tgtcaaaagc
      721 ttcagcccca cacacaacca cccggatgac gacagccctg gcctctaccc acagccctgt
      781 cattgacagc tctccagata agccgatgtg gaaggtcatc attgctgggg tggttgtggc
      841 cactctgtta gcgcttggac ttgtcatcct tgtggtcctg tacctaaaga aagctcgaga
      901 aaaagcccag aacgtcggga ataaatgtca ccatatctac gaggacttct caggccagaa
      961 ggaagagacc actaacttta atcagcaggt cctctccagt gaggacactg agaacatctg
     1021 ctatgcctct ctcatccatc taaaccacgt gagccctcag gactcccagt acaggaacac
     1081 ccagccctct ggtgacctga ttctgtctgt ggaatatgcc agcatctcta gaaatggact
     1141 cgggtcttcc aagtcaaacg cccaagaggt ggagaccagg gactgagagc tgagctccca
     1201 gggcagcgag cacgtaggtg cgctactgtc cttgtacagg agcaacttcc tacagctaag
     1261 atggcctcca acgatgacgg tggacacact ttcttcaagg aagtatgtgt ggaaggcggc
     1321 tgggccagtg gctctgagtg actaactttg tttccttgtg tggccatcac ttccttcctc
     1381 actggttctt gaaatctagg tgggttgcgt aagttcctca ggaactctat gcaaagttct
     1441 gcccaacccc caatccctcc ccacaccggc ctggcttcta tttctaaaac caccctgctt
     1501 ggagaactct ggtgaccttg ccaggatgaa tactgagacg tgggcggtgc ccatccctga
     1561 cctatcttct gaggtatttc caatcatgac aaatacggaa gcttccttgc catagctagt
     1621 cacacatctc agatgtcaga ctgtgtctgg gctcctcgga cttctaaagg actaccaccc
     1681 accctgctaa ctgtgtctac ccgtctccct gcggcatcta agaccacatg caccttactg
     1741 aagatgtggc tccgtcctca gcctgaggct ccatgggaat gtagagtgtt caaccctatg
     1801 aggcagacac tcggcgagac agagacaggg aaggaatggg atgctctgag ttcctatgga
     1861 ctctgcttca ccctgagtgc ccatgtcctc ctcctacgtc acagatgtgc ctgggagaga
     1921 caggatgttg actacctcca gcctcacatc caactcagtc ttgtccctgg gttattggcc
     1981 tctgctcatg gtttcagttg acctgtggtc cttcgtggct cctaacagcg cctttgctct
     2041 tgggccgtgt ttcagtctac actgtctcct ggaagcccac tttttattgt acgttccttg
     2101 aattgttctc cttgtctgtg gcttgtcctg aggggttggg cttctcatga gctgtcaaaa
     2161 cccaaaaggt tttctcagac tggagctcct ggaacggact ggcctgtatt cgctggacca
     2221 gtatcgatgg atacttagga ctcccaggat ccacactcaa gcgtggggag agagattgat
     2281 tgattctagg atgtagttgg gaacagttat aatgtggatg aagatcccaa acatccctac
     2341 ttacgtgcat ccttccattt tatagatgga aatagactaa gacacagaga gactgggtct
     2401 cactggtcat aaacgggaga tggcagacgg t
//
