LOCUS       NM_001108219            2969 bp    mRNA    linear   ROD 07-OCT-2023
DEFINITION  Rattus norvegicus similar to human chromosome 2 open reading frame
            69 (C9h2orf69), mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_001108219 XM_001067792 XM_237162
VERSION     NM_001108219.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2969)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2969)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473965.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_237162.4, XM_001067792.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166506.1, CK479417.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2969
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q31"
     gene            1..2969
                     /gene="C9h2orf69"
                     /gene_synonym="RGD1306941"
                     /note="similar to human chromosome 2 open reading frame
                     69"
                     /db_xref="GeneID:316406"
                     /db_xref="RGD:1306941"
     exon            1..333
                     /gene="C9h2orf69"
                     /gene_synonym="RGD1306941"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..1155
                     /gene="C9h2orf69"
                     /gene_synonym="RGD1306941"
                     /note="UPF0565 protein C2orf69 homolog; mitochondrial
                     protein C2orf69 homolog"
                     /codon_start=1
                     /product="mitochondrial protein C2orf69 homolog precursor"
                     /protein_id="NP_001101689.1"
                     /db_xref="GeneID:316406"
                     /db_xref="RGD:1306941"
                     /translation="MKGSRWLRSPALVLLLLRPLLASGDSVSRLQIQTMNPGGGARGF
                     PEGSHRLLRFTVPGSDPERSNELLLLTAGKGDSPEQPHHVLYFPGDVQNYHEIMTRHP
                     ENYQWENWSLENIATILARRFPNSYIWVIKCSRMHLHKFSCYDNFVKSNMFGAPEHSP
                     DFGAFKHLYMLLVNAFNLTQNSLLSQSMSVWNKDCKASNCESNSSASNGGQEKNGRTC
                     EYADELSMSFAPLSLDGASFTLIGFSKGCVVLNQLLFELKEAKKDKNIDAFIKSVRTM
                     YWLDGGHSGGSNTWVTYPEVLKEFAQTGITVHTHVTPYQVHDPMRSWIGKEHKKFVQI
                     LGDLGMQVTSQIHFAKETPSIENHFRVHEVF"
     exon            334..2969
                     /gene="C9h2orf69"
                     /gene_synonym="RGD1306941"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgggctgctg aggccccgcc ctcgccggcc ggtgtgcggc cctggccgct cgagcccatg
       61 aaggggtctc ggtggctgcg gtccccggca ctggtgctgc tgctcctgag gccgctgctc
      121 gcttccggag actccgtgtc ccgcctgcag atccaaacca tgaacccggg cggcggcgcg
      181 cggggcttcc cagagggcag ccaccgtcta ctgcgcttca cggtgccggg ctctgacccg
      241 gagcgcagca atgaactgct cctgctgacg gccgggaagg gagactcccc tgagcagccg
      301 caccacgtcc tctacttccc cggggacgtg cagaattacc atgagattat gactcgtcat
      361 cctgagaatt atcaatggga aaattggagt ctagaaaata ttgctaccat tttagcccgc
      421 cgttttccca atagttatat ttgggtaata aagtgttccc gaatgcattt gcacaaattc
      481 agctgctatg acaattttgt gaagagcaac atgtttggtg caccagaaca cagtccggac
      541 tttggagcct ttaagcactt atatatgtta ctagttaatg cttttaactt aactcagaac
      601 agtctgctgt cccaaagcat gagtgtttgg aataaggatt gtaaagcatc taactgtgag
      661 tctaattctt ctgctagtaa tggtggccag gagaaaaacg ggaggacctg tgagtatgct
      721 gacgagctgt ccatgagttt tgctccactg tcattggatg gtgcatcgtt tactttgatt
      781 ggattcagta aaggctgtgt tgttttgaat cagttgctgt ttgagttgaa ggaagccaag
      841 aaagacaaga acatagatgc gttcatcaaa agtgtaagaa caatgtactg gctggatggc
      901 ggacattctg gaggaagcaa tacgtgggtc acatatccag aagtcttgaa agaatttgct
      961 caaacaggga ttactgttca cactcatgta acaccttacc aagtacatga tccaatgaga
     1021 tcctggattg gaaaggagca caagaaattt gttcagatac tcggggattt gggtatgcaa
     1081 gtgaccagtc aaattcattt tgcgaaggaa actccttcca tagagaatca tttcagggtt
     1141 catgaagtat tctgagacta ttaatgtgct tacttaatgg gagaataaat attttgagta
     1201 ttataaatgc agatgatgag atgcaaggtt aacgatgtat caacagtttg tgggctaaga
     1261 agatgcacat tccaaagtat gagtgtcaaa tgcaatagga ttctttgctt gtaaatgtga
     1321 gcagttttaa attctgattg gattagaatt agtttgaaat ctaaaagggt aatttgtgct
     1381 aactctatga ccattaaaat gaaagcaacc atgttagttt ttttaaaaga taacaaaatt
     1441 ggtattggaa atagctgact ttcctgagac ctattttaat ctgactttgg tagtaacagc
     1501 attgagctgt tgactagaga catttcactt ctctctgtcc atcaccctct ccagacaact
     1561 gcactctgca tccagactcc tggggtttct gaacccctgg acttattctc agtgttccac
     1621 caagtgtttt gttttgtttt gttttaaagt caaaatatat ttatcccctc atatccaaga
     1681 tcatagaatt gtatagttgg gttttaaaac atattacact aagcactgta acgtaattct
     1741 taattgtcgg tttttaatta tttgttagtg tgctttcaaa acaagacaga tttcacagac
     1801 ctaaatcagc atttcttcag aagcatggtt ttgtctgcca agagaaaata gctttctttg
     1861 gccaaatgta aaattaaatt gatgagataa gaaaggttac aaaagaaggt ttgaagacac
     1921 aaataattta aattttggcc cagaaactga atttgcttaa cactgctaca taatttgggc
     1981 acatttgtct ttactagaaa aatgcatttt gagaaaccta gatctaatga atttcaaaca
     2041 atattggaac atagctgtgt agttttaaaa agtggtcagg cactttttta tttataaata
     2101 atgaaataac taaacaagga actaaaacct ctgctttggg attggcaaga aactactaaa
     2161 gaatggcacc tcccaggccc agtgagcttg tctatcaaat aatatgaaag tgttaagttt
     2221 ttgattcctt ccaaaattac atcttaatca acctataact atattccaaa tattgactca
     2281 tgataaagaa ttccttcaca cacggtgttt aaaaatgaac atgattccat caattaaagt
     2341 tgagtgtaca ttttcataag taattttata ttgttccact ttctttgaat atccattctt
     2401 ttgagatcaa cactacttct cactgtagaa acaactcacc tggcttctaa cttactgttt
     2461 ccttaatgtt aagcactgtg actggatggc tatcttcaat tttttaataa tcctcaaatg
     2521 tgtcaataat gtaaaactgc ttaactactg aatggtcata cagaggggaa aggcttttta
     2581 gttctcacag gattaactga agtagaaaga ggggttttta agaactcact gagttagttc
     2641 ttcgcctctc cacataaatg ttcaaatgtt acaagttaaa gtggatgttg atcagacaga
     2701 cactgagccg tcacctctgg agagtgttaa tacagagtgt tagtacagat gcttaggagt
     2761 ggaaatgatt gagttgaccc tcacacaggt atttctgttt aatacttcaa actggtcctt
     2821 ttcttcatct gtttaaaatt gtatgttaat tttttatggt aaacatgcat cctacttgat
     2881 tgtgcctttg taatgagtca ctgagacaaa tgtgaacgtt gttaccacta cagcatgaat
     2941 gtataattat aattaataat aataatcca
//
