LOCUS       NM_001419487            2589 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 2 open reading frame
            42 (C4h2orf42), transcript variant 1, mRNA.
ACCESSION   NM_001419487 XM_008763070
VERSION     NM_001419487.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2589)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2589)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Apr 3, 2023 this sequence version replaced XM_008763070.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582424.1685369.1,
                                           SRR26360186.677071.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-172               JAXUCZ010000004.1  120445802-120445973
            173-426             JAXUCZ010000004.1  120450100-120450353
            427-1261            JAXUCZ010000004.1  120451618-120452452
            1262-1372           JAXUCZ010000004.1  120455542-120455652
            1373-1477           JAXUCZ010000004.1  120457916-120458020
            1478-1582           JAXUCZ010000004.1  120459780-120459884
            1583-1690           JAXUCZ010000004.1  120464491-120464598
            1691-1791           JAXUCZ010000004.1  120468363-120468463
            1792-1954           JAXUCZ010000004.1  120471104-120471266
            1955-2589           JAXUCZ010000004.1  120473593-120474227
FEATURES             Location/Qualifiers
     source          1..2589
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..2589
                     /gene="C4h2orf42"
                     /gene_synonym="RGD1306746"
                     /note="similar to human chromosome 2 open reading frame
                     42"
                     /db_xref="GeneID:312511"
                     /db_xref="RGD:1306746"
     exon            1..172
                     /gene="C4h2orf42"
                     /gene_synonym="RGD1306746"
                     /inference="alignment:Splign:2.1.0"
     exon            173..426
                     /gene="C4h2orf42"
                     /gene_synonym="RGD1306746"
                     /inference="alignment:Splign:2.1.0"
     exon            427..1261
                     /gene="C4h2orf42"
                     /gene_synonym="RGD1306746"
                     /inference="alignment:Splign:2.1.0"
     CDS             439..2163
                     /gene="C4h2orf42"
                     /gene_synonym="RGD1306746"
                     /codon_start=1
                     /product="uncharacterized protein C2orf42 homolog"
                     /protein_id="NP_001406416.1"
                     /db_xref="GeneID:312511"
                     /db_xref="RGD:1306746"
                     /translation="MEPNSQRTKVPAFLSDLGKATLRGIRKCPRCGTYNGTRGLSCKN
                     KTCGTIFRYGARKQPSIEAVKIITGSDLQVYSVRQRDRGPDYRCFVELGVSETAIQTV
                     DGTIITQLSSGRCYVPSCLKAATQGIVENQCQHIKLAVNCQAEATPLTLKSSVLNAMQ
                     APPETKQTIWQLATEPPGPLVQRVTKSIMVVKCKASQKHNLGYLHTSFMQKISSRSLP
                     ERRFFCSCQTLKSHKSSVPKAEAAPKCIHFFACLCAFASDETLAQEFSDFLNFDASGL
                     KEIIVPQLGCHAESSVSACESAASKPRKRKKNEMSGAQVTSSLMPQDAVNSNLRKSGL
                     KKPMVTSSLKRQVCGQLLDEAQVTLSFQDWLASVTERIHQTMHYQFDGKPEPLVFHIP
                     QSFFDALQQRISTGSAKKRLPNSTTAFVRKDALPLGTFSKYTWHITNILQVKQILDTP
                     EMPLEITRSFIQNQDGTYELFKCPKVEVESIAETYGRIEKQPVLRPLELKTFLKVGNT
                     SPDQKEPTPFIIEWIPDILPQSKIGELRIKFEYGHHRNGHVADYQDPRPPMDQPLELA
                     PLTTITFP"
     exon            1262..1372
                     /gene="C4h2orf42"
                     /gene_synonym="RGD1306746"
                     /inference="alignment:Splign:2.1.0"
     exon            1373..1477
                     /gene="C4h2orf42"
                     /gene_synonym="RGD1306746"
                     /inference="alignment:Splign:2.1.0"
     exon            1478..1582
                     /gene="C4h2orf42"
                     /gene_synonym="RGD1306746"
                     /inference="alignment:Splign:2.1.0"
     exon            1583..1690
                     /gene="C4h2orf42"
                     /gene_synonym="RGD1306746"
                     /inference="alignment:Splign:2.1.0"
     exon            1691..1791
                     /gene="C4h2orf42"
                     /gene_synonym="RGD1306746"
                     /inference="alignment:Splign:2.1.0"
     exon            1792..1954
                     /gene="C4h2orf42"
                     /gene_synonym="RGD1306746"
                     /inference="alignment:Splign:2.1.0"
     exon            1955..2589
                     /gene="C4h2orf42"
                     /gene_synonym="RGD1306746"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtttagcaac cggccgttcc cggaagctgc gcttaggcgc gttaccctaa acaacacagg
       61 ggttgtggcc cggactctgt tatttgacag caacctggct gattctgcaa tcaataaagg
      121 tctgcgggct gtgacgtttc gatccaaccc gacagtttta ttcctaaaat gggctgccaa
      181 gtgttctacc tagaggagct ggaatttgac tggaacccta agcaagagct ttgccggtgg
      241 ggatggaatg tctgcagtgt tacatcagag ttcagccttc agaggactta ggccaagtgg
      301 cacacctcac tacaaatgag cttgcctggt tttgtgctat ctgatcgtca caaactaatg
      361 aaacacatgt taggtcttaa ggacacaagt tccactgttc tccaggtgcc ctggcagctg
      421 gtacagggac tgtgaacaat ggaaccaaac tctcagagga ctaaagtccc agctttctta
      481 tctgacttgg ggaaggccac attgagggga atcaggaagt gtccccgatg tggtacgtac
      541 aatggaaccc gtgggttgag ctgtaagaac aagacatgtg gaaccatatt tcgctatggt
      601 gcccgaaagc agcctagcat tgaagctgtc aaaatcatca caggctctga tctacaggtc
      661 tactcggtgc ggcaaagaga ccgaggccct gactaccgat gctttgtgga gctaggtgtt
      721 tcagagaccg cgatccagac cgtggatggt acaattatca ctcagctgag ctctggccga
      781 tgttatgtcc cctcctgctt gaaagctgcc actcagggca tcgtggagaa ccagtgtcaa
      841 cacatcaagc tagcagtgaa ctgccaggca gaggccaccc ctctgaccct gaagagttca
      901 gtcctgaatg ctatgcaggc tcccccagaa accaaacaga ccatctggca gttggccacg
      961 gaacctccgg gtcccctggt acagagagtc acgaaaagca ttatggtagt gaaatgcaaa
     1021 gccagccaga agcacaactt gggctatttg cacacgtcct tcatgcagaa aatcagctcc
     1081 agaagcttgc cagagcgccg tttcttctgc tcctgccaga ctctgaagtc acacaagtcc
     1141 agtgtcccca aggctgaggc agccccaaag tgcatccact tctttgcttg cctctgtgcc
     1201 tttgccagtg atgagacatt ggctcaggaa ttctcggact ttctaaattt cgatgccagt
     1261 ggtcttaaag agataattgt gccccagtta ggctgccatg cagaatcatc tgtctcagct
     1321 tgtgagtccg ctgcctctaa gccccggaag aggaagaaga atgaaatgtc tggtgcacag
     1381 gtgaccagct cactgatgcc acaagatgca gtaaacagca atctaaggaa gagtggcctg
     1441 aaaaagccca tggttacgtc atcactgaaa aggcaggtct gtggtcagct gttagatgag
     1501 gcacaggtga ccttgtcttt ccaagactgg ctggccagtg tcacagagcg catccatcag
     1561 accatgcact atcagtttga cggcaaacca gagcccctgg tgttccacat tcctcagtcc
     1621 ttttttgatg ccttgcaaca gagaatatcc acaggaagtg caaaaaagcg gctccccaac
     1681 tccaccacag cctttgttcg gaaagatgcc ttgcccctgg gaaccttttc caagtacacc
     1741 tggcatatca ctaatattct gcaagtcaaa caaatcttag acaccccaga gatgcccctg
     1801 gaaatcacac gtagcttcat ccagaaccag gatgggactt acgagctatt taaatgccct
     1861 aaagtggaag tggagagcat agcggaaacc tacggccgca tagagaagca gcctgtgctg
     1921 agacctttgg agctgaaaac cttcctcaaa gttgggaaca cttccccaga tcaaaaggag
     1981 ccaacaccct ttatcatcga gtggatccca gatatcctcc cacaatccaa gattggtgag
     2041 cttcgaatca agtttgagta tggtcatcac cggaacggac atgtggctga ttaccaggac
     2101 ccgaggccac ccatggacca gcctttggag ctggcccctc tgactactat cactttccct
     2161 tgaggcaaat caagagtatt ttgcagagtt tgcacatccc aactgctgag gactgtaaat
     2221 cctagtagca cttctataat ccctgccgat gaaccgcact tggctaagat gcagttactc
     2281 agcccatccg tgtgtgttct gcagaagact tttgtaaaca gccttgtgtg tacagtcttc
     2341 gttacaaatt ggacacttat ttctgaccag agttttacaa aagtccagct cactggtttc
     2401 tcctggagtc acctgcagct tgttttctgt aattctctaa agtcacagca ctggatctta
     2461 gctaacagtg ttggaaagtt aatggtgccc tgggccgagc agaatcctct ctctctctct
     2521 gcctgagagc tccaatcata ctctttatcc tgataacaaa taaagtacaa tgtcactagt
     2581 ttttccaaa
//
