LOCUS       NM_001107654            3107 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 5 open reading frame
            22 (C2h5orf22), mRNA.
ACCESSION   NM_001107654 XM_001058506 XM_226842
VERSION     NM_001107654.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Apr 3, 2023 this sequence version replaced NM_001107654.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.1863142.1,
                                           SRR26643296.5590.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760400,
                                           SAMN12840122 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-179               JAXUCZ010000002.1  63591574-63591752   c
            180-325             JAXUCZ010000002.1  63590647-63590792   c
            326-475             JAXUCZ010000002.1  63588653-63588802   c
            476-878             JAXUCZ010000002.1  63584021-63584423   c
            879-941             JAXUCZ010000002.1  63582530-63582592   c
            942-1063            JAXUCZ010000002.1  63582071-63582192   c
            1064-1130           JAXUCZ010000002.1  63580639-63580705   c
            1131-1270           JAXUCZ010000002.1  63578573-63578712   c
            1271-3107           JAXUCZ010000002.1  63576348-63578184   c
FEATURES             Location/Qualifiers
     source          1..3107
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q16"
     gene            1..3107
                     /gene="C2h5orf22"
                     /gene_synonym="RGD1306502"
                     /note="similar to human chromosome 5 open reading frame
                     22"
                     /db_xref="GeneID:310158"
                     /db_xref="RGD:1306502"
     exon            1..179
                     /gene="C2h5orf22"
                     /gene_synonym="RGD1306502"
                     /inference="alignment:Splign:2.1.0"
     CDS             99..1403
                     /gene="C2h5orf22"
                     /gene_synonym="RGD1306502"
                     /codon_start=1
                     /product="UPF0489 protein C5orf22 homolog"
                     /protein_id="NP_001101124.1"
                     /db_xref="GeneID:310158"
                     /db_xref="RGD:1306502"
                     /translation="MSDTGGDGARLRRYPRLPVWVVEDHQEVLPFIYRAIGSKHLPDS
                     NIRFLHFDSHPDLLIPVNMPADTVFDKEALFGELSIENWIMPAVYAGHFSHVIWLHPT
                     WAQQIREGKHHFLVGKDISTTTIRVTSTDYYFLSDGLFVPEDQLENQKPLQLDVIMVE
                     PYKLCSNQDDGDSVSSTKKPRLALGGGESTVAADGDSCSEGHRGDAVTPRSDSCSGSQ
                     QSQGTASTGEILGMLKTGDAFVLDIDLDFFSVKNPFKEMFTQDEYKILQELYQFKKPD
                     SNLTEEDLVDVVDARTHQLEDLEAIFADLCDGDSEETVRKWASNPGMESLVPLVQSLT
                     SRMEVPDYEMVHQAGLTCDYSELPHHISTEEEIEYLIQSVYSLLKSLPKPTLVTIARS
                     SLDDYCPPEQVDIIQGKVLDVLGSLYGTLETHLVYSEESPPC"
     exon            180..325
                     /gene="C2h5orf22"
                     /gene_synonym="RGD1306502"
                     /inference="alignment:Splign:2.1.0"
     exon            326..475
                     /gene="C2h5orf22"
                     /gene_synonym="RGD1306502"
                     /inference="alignment:Splign:2.1.0"
     exon            476..878
                     /gene="C2h5orf22"
                     /gene_synonym="RGD1306502"
                     /inference="alignment:Splign:2.1.0"
     exon            879..941
                     /gene="C2h5orf22"
                     /gene_synonym="RGD1306502"
                     /inference="alignment:Splign:2.1.0"
     exon            942..1063
                     /gene="C2h5orf22"
                     /gene_synonym="RGD1306502"
                     /inference="alignment:Splign:2.1.0"
     exon            1064..1130
                     /gene="C2h5orf22"
                     /gene_synonym="RGD1306502"
                     /inference="alignment:Splign:2.1.0"
     exon            1131..1270
                     /gene="C2h5orf22"
                     /gene_synonym="RGD1306502"
                     /inference="alignment:Splign:2.1.0"
     exon            1271..3107
                     /gene="C2h5orf22"
                     /gene_synonym="RGD1306502"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtttccgccg ctaatggacc gtggggcgcg cggcttggag gtgctgggct cctctcccgg
       61 gtgtctcaga gtcaccgcgg cctcggtcgc gcggagacat gagtgacacg ggaggcgacg
      121 gcgcgcgcct caggcgctat cccaggctcc cggtgtgggt agtggaggat caccaggagg
      181 ttctgccttt catataccgg gccataggtt cgaagcatct tcctgacagt aatatacgtt
      241 ttttacactt tgactcccac ccagacctcc ttattcctgt gaatatgccg gcagacactg
      301 tgtttgataa agaagcactc tttggagaac taagtattga aaattggatt atgcctgcag
      361 tttacgctgg ccatttctct cacgtaatat ggcttcatcc cacatgggcc cagcaaatca
      421 gagagggcaa acaccacttc ttagtaggca aagacatttc caccacaacc atcagggtta
      481 caagtacaga ttattacttc ctaagtgacg gtctgtttgt acctgaagat cagctagaga
      541 accaaaagcc cttacagtta gatgtgatta tggtagaacc ttacaaactc tgtagcaatc
      601 aagatgacgg tgactctgtg tcttctacaa agaagcccag gctggcactg ggaggtggag
      661 agagcactgt cgctgctgat ggagactctt gctcagaagg acatcgaggg gatgcagtga
      721 caccaagaag tgactcatgc tctggaagtc agcagagcca gggcacagcc agcacagggg
      781 agattctggg catgttgaag actggagatg cgtttgttct ggatattgac ttggattttt
      841 tttctgtcaa aaaccccttc aaagaaatgt tcactcagga tgagtacaaa attctacagg
      901 agctttacca atttaaaaag cctgacagta accttactga ggaagatttg gtagatgttg
      961 ttgatgctcg aactcatcag ttagaagatt tagaagcaat ttttgctgat ttgtgtgacg
     1021 gtgatagtga agaaactgta cggaaatggg cttcgaaccc tggaatggaa tcactcgtcc
     1081 cacttgtaca gagcctgaca agtcggatgg aagtaccaga ctatgaaatg gttcaccagg
     1141 ctgggctaac ctgcgattat tcagaacttc cgcatcatat cagcacagaa gaagaaatcg
     1201 agtatcttat tcagtctgtg tattctttat tgaaaagtct accaaagcct actcttgtga
     1261 caattgcaag gtcgagtctg gatgactact gtcctccaga gcaagtcgac atcattcagg
     1321 gaaaggtcct cgatgtgctg ggctcgctct acgggaccct ggaaactcac ctggtgtact
     1381 cagaagagtc ccctccatgt tgacagagtg ctgggctgct gtgcgttctg gcacagtgac
     1441 aggactattg tttgtgagct ttcagagtgc actttttagt gaactttcag tcggaatcag
     1501 tcagacattt tgaatctcca agcacatatc agtgaacaac agtacagcat cggggtatcg
     1561 gcaggggttc ttgtttgcac caaatctgtt accccggttg atggagacgg tcggctgtct
     1621 tccttgctgc ccatcgctgc cctgattctg taaggttttt ttctctttcc ccaacaggac
     1681 tttgggtcat ataatttatt tatttattca tcagctgctg tttatctagc acttttgtgt
     1741 gccagacact attagcgaca agatgccctg ccctcctatg gaagacacga gaagcaaaca
     1801 atggcctgca aacagtctca gggaaagaag ggagggccac agctgtgtct ggcacagcgt
     1861 cagttctcag ggcagccagc ctgacaggaa agtaacactc gcaaaagtca tgtaaaaggt
     1921 cttgccagtc cgtgacaatg tttgcagcaa gtctgtcagt ctaaagatgt tgggattgtg
     1981 cccacccttt tgctaaatgt tctccagact tgttttggtt gagtaaacct aatcaaacaa
     2041 aattataggt ggtggtggtg gtggtggtgg tggtggtggt ggtggtggtg gtggtgttat
     2101 tggtggtgtt attgattggt tggttttaat tttctgagac agggtttctc tgtgtagccc
     2161 tgactgtcct ggaactcaat ctgtagagta aactgatctt gaactcaaaa aacccaactg
     2221 cctctgcctc cgaaggactg caccaccact acccagctgc ttacagtgtt tgataactgg
     2281 aaacgccttt tgggagtttt ttccttggta gtcatcttgg gcctcagttg gcattaagca
     2341 ctaagtatca tttttatggc aatcagtcaa gcatctagaa agttaagagc acttgctgtc
     2401 cttcccagta cccacacggc agctcacaac attgtaactc caacgttctc ttgtgacctc
     2461 ccagcaccac acacacatac gtgtacatac ccacatacat acccacacat aaacatataa
     2521 ataatatttt ttaaagaacc aaggacaata aattttcctg atgagccaac attttaagga
     2581 aaaaaataag aaaattgcat ctttgtgacc tgacataaat acccaaggat aactgccatc
     2641 cagccttctc acggtgtgac tgagcacagt gggtcctccc ttagctgaat tctaagagtg
     2701 aagaatagtt tattgtttga agcagtgagg agagcactag ggatatattt cataatacat
     2761 gaagaaagga gggaagacta atgcaagttt gtactgtaaa gaagagtatt ttctgctaca
     2821 tgcattggag atcacccttc atatatttaa tgagcggagt ttaaccttag tgacccacaa
     2881 gagtgactgt agacaccact gtttaacccc gagttcccac ccctccagcc atgaatagga
     2941 ctgtctttat catggaagtt aatgcctcag tttgcctttt ttctgcactt tgtttcactt
     3001 ttgttcagta attacttttt aagtgcttaa tttctttaaa gggtcagatg atgtgcaaag
     3061 aaaaataata aaacatctac cacccagcct gatttcattt tcacaga
//
