LOCUS       NM_001134867            4817 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus R3H domain containing 1 (R3hdm1), mRNA.
ACCESSION   NM_001134867 XM_573442
VERSION     NM_001134867.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4817)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 4817)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Sep 10, 2008 this sequence version replaced XM_573442.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.50874.1,
                                           SRR26643296.31474.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-192               JAXUCZ010000013.1  42148290-42148481
            193-401             JAXUCZ010000013.1  42202388-42202596
            402-612             JAXUCZ010000013.1  42203956-42204166
            613-654             JAXUCZ010000013.1  42212607-42212648
            655-744             JAXUCZ010000013.1  42213180-42213269
            745-859             JAXUCZ010000013.1  42218432-42218546
            860-938             JAXUCZ010000013.1  42219418-42219496
            939-998             JAXUCZ010000013.1  42224993-42225052
            999-1139            JAXUCZ010000013.1  42225136-42225276
            1140-1248           JAXUCZ010000013.1  42228813-42228921
            1249-1344           JAXUCZ010000013.1  42229017-42229112
            1345-1382           JAXUCZ010000013.1  42231439-42231476
            1383-1433           JAXUCZ010000013.1  42231560-42231610
            1434-1660           JAXUCZ010000013.1  42231711-42231937
            1661-1915           JAXUCZ010000013.1  42234170-42234424
            1916-2067           JAXUCZ010000013.1  42236466-42236617
            2068-2169           JAXUCZ010000013.1  42240369-42240470
            2170-2460           JAXUCZ010000013.1  42243163-42243453
            2461-2584           JAXUCZ010000013.1  42246616-42246739
            2585-2739           JAXUCZ010000013.1  42260837-42260991
            2740-2891           JAXUCZ010000013.1  42265681-42265832
            2892-2995           JAXUCZ010000013.1  42270505-42270608
            2996-3168           JAXUCZ010000013.1  42273173-42273345
            3169-3313           JAXUCZ010000013.1  42279939-42280083
            3314-3396           JAXUCZ010000013.1  42283867-42283949
            3397-3481           JAXUCZ010000013.1  42284323-42284407
            3482-4817           JAXUCZ010000013.1  42284976-42286311
FEATURES             Location/Qualifiers
     source          1..4817
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q13"
     gene            1..4817
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /note="R3H domain containing 1"
                     /db_xref="GeneID:304763"
                     /db_xref="RGD:1307497"
     exon            1..192
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            193..401
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            402..612
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     CDS             442..3843
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /note="R3H domain (binds single-stranded nucleic acids)
                     containing; R3H domain 1 (binds single-stranded nucleic
                     acids)"
                     /codon_start=1
                     /product="R3H domain-containing protein 1"
                     /protein_id="NP_001128339.1"
                     /db_xref="GeneID:304763"
                     /db_xref="RGD:1307497"
                     /translation="MRMSDIVIIKDETETMKDLEAEMRDTTRVENLIKSENYGKISAE
                     KNEHCIDNNIDLQRPPQSFGQTGKRSKSSSKLKLVRSLAVCEESPPPPAAEIPQETQE
                     KIQIQLTQSFEKEEKPSKDETDKEKASDKLPRKMLSRDSSQEYTDSTGIDLHEFLVNT
                     LKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYFGLDHNVDQ
                     SGKSVIVNKTSNTRIPDQKFNEHIKDDRGEDFQKRYILKRDNSSFDKDDSQMRIRLKD
                     DRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRIPDEDTIGTQQRRQIFRVNK
                     DASGRSTNSHQSSTENELKYSEPRPWSSTDSDSSLRNLKPAVTKASSFSGISVLTRGD
                     SSGSSKSIGRLSKTGSESSGSVGSSTGSLSHTQQPLPGSALSQSSHGAPVIYPAASNH
                     SSLSFDGGLNGQGASPSTSFLLLPLEATGIPPGSILINPQTGQPFINPDGSPVVYNPP
                     MTQQSVRTQVPGPPQPPLPPPPPQQPAASHMFSQPVGPLQSSSQPVECSPAPYPSPLL
                     PVSPTQQYSVDNLGSQFSHMSLARQPSADGSDPHATMFQSTVVLQSPQQSGYIVTTAP
                     PHPPPPPPPPPPPPSLPPGQSVPTASFSGHPVSQPVLQQQGFLPQPSPQMPACYCAPG
                     HYHSSQPQYRPIPSVHHSSHLNQPLPQPAQHTGYQVMPNQQQNYQGIVGVQSPQSQSL
                     MGGQPNSTGPHIQGVVIPYPSVPSYQVSLPQGSQGIAHQTYQQPVVFPNQSNQGSLPT
                     AGMPVYYSVIPPGQQSNLSSAVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQCAALPQQ
                     PPGGGMVMMQLNLPNNAPSRAHSPPQWKQNKYHCDHQRGQKCMEVSHMDSIVQHSPQL
                     SSPILSPVQSPAPAQLSALKTTRPSGPPLSIVSQFARPFVPGQGDARYPLLGQPLQYS
                     PPTLLHGHIPHQQGQSGSRHGNRGRRQAKKAASTDLGAGEAVVGKVLEITELPDGITR
                     MEAEKLFGELFKIGAKIRWLRDPQSQPQLRRHPLCCGSGDNTVNPERSKPSDLASTYT
                     VLATFPSISAAQSALKKQIHSVNKFKLRMSKKHYDFHILERASSQ"
     exon            613..654
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            655..744
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            745..859
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            860..938
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            939..998
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            999..1139
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            1140..1248
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            1249..1344
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            1345..1382
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            1383..1433
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            1434..1660
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            1661..1915
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            1916..2067
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            2068..2169
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            2170..2460
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            2461..2584
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            2585..2739
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            2740..2891
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            2892..2995
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            2996..3168
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            3169..3313
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            3314..3396
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            3397..3481
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
     exon            3482..4817
                     /gene="R3hdm1"
                     /gene_synonym="R3hdm"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaggcggggc tagtgcgtgg tgggaagggg cgggattctg ccgccgcggc tgccgctgga
       61 gccggtgtcc gggctggtga tggggttaat tcccttccgt gagactcttc cttgcaacca
      121 gccggccccg ccgtcgcccc gctgcgccgc gctcccgcca cctcctcctg ctccttctcc
      181 tcagtaacgc gggccactga aaggtatgat atatttgatc caagacagtc catttcagcc
      241 caggaatctg cagtggtgac aaggacatgg gactcctccc gccagattac tgttggttca
      301 atacaattga catcctggct gacaactgtg aaaaggaacc ttgggttatt ttattttatt
      361 tttgtggaac accacaatct cagatccgta ggacacatca ggcttcaagt tccctgtaga
      421 attctaaaat aacctttgct aatgaggatg tctgatattg ttattataaa agatgaaact
      481 gaaacaatga aggatttgga ggcagaaatg agagatacaa ccagagttga aaatcttatc
      541 aaatcagaaa actatgggaa gatttcggca gagaagaatg aacattgtat tgacaacaat
      601 attgatttgc agcggccccc gcagtcattt ggacagacag gaaaaaggtc taagtcaagc
      661 tcaaagttaa agctagttcg gagccttgca gtgtgtgaag aatctccacc accccctgca
      721 gcagagatac cccaggagac ccaggagaaa attcagatac agttaacaca atcatttgaa
      781 aaagaggaaa agccctcaaa agatgaaaca gataaagaaa aagccagtga taagttaccc
      841 agaaaaatgc tatcaagaga ttccagtcaa gaatacactg attcaactgg catagatcta
      901 catgaatttt tagtaaatac attaaaaaac aatcccaggg acagaatgat gctgctgaaa
      961 ttggaacaag aaattttaga tttcattggt aataatgagt ccccacgtaa gaagtttccc
     1021 ccgatgacat cttaccacag gatgctgtta cacagagtgg ctgcctactt tggattagac
     1081 cacaatgttg accagagtgg gaagtctgtc atagtgaaca aaactagcaa caccagaata
     1141 cctgatcaga aatttaatga gcatattaag gatgacagag gtgaagactt tcagaaacgt
     1201 tacatcctta agagagataa ctctagcttt gacaaagacg atagccagat gagaatacgt
     1261 ttaaaagatg acaggagaag caaatccata gaagaaagag aagaagagta ccagagagct
     1321 agagacagga tattctccca agactccctg tgttcccaag aaaactacat tattgacaaa
     1381 agaattccag atgaggacac tattggtacc cagcagaggc gccagatatt tagagttaat
     1441 aaagatgctt cagggcgatc aacaaacagc catcagagca gcactgaaaa tgagttgaaa
     1501 tactcagagc cacgaccctg gagcagcaca gattcagaca gctccctccg aaacctgaaa
     1561 cccgctgtaa ccaaagccag cagctttagc ggaatctcgg tcctgacaag aggtgatagt
     1621 tctggaagca gcaaaagcat aggcaggctt tcaaaaacag gatctgagtc ttcaggtagt
     1681 gtagggtcct ctacaggctc tctctctcac acccagcagc ctctgccagg ctcagctctt
     1741 agccagtctt ctcatggcgc acctgtcatc tacccggcag ccagcaatca cagttctctt
     1801 tcctttgatg ggggcctcaa tggtcaaggt gcatctccta gcactagctt ccttttgctt
     1861 cccttggaag cgactggcat accacctggc agtattctga tcaacccaca aacaggtcag
     1921 cccttcataa acccagatgg aagtccagtt gtgtacaatc ctcccatgac tcaacagtca
     1981 gttcgaaccc aagtgcctgg tcctccacag ccacctctgc cacccccacc acctcagcag
     2041 ccagcagcca gccacatgtt ctcacagcct gttggtcctc tgcagtcctc ttctcagcct
     2101 gttgagtgct ctccagcccc ctacccatcc ccgctcctgc cagtctcacc cacccagcag
     2161 tactctgtgg ataaccttgg ctctcagttc agccacatga gtcttgcccg ccagccatca
     2221 gccgatggtt ctgaccctca tgccaccatg ttccaatcca ctgttgttct tcagtctccg
     2281 cagcagtctg gttacatcgt gacgacagca cccccacatc ctccacctcc tcctccacca
     2341 cctccccctc ctccttccct accacctggg cagtcagtcc ccactgccag tttctctggg
     2401 catcctgtca gccagcctgt gctccagcag caggggtttc ttcctcagcc ctcaccacag
     2461 atgccagcct gttactgtgc tccaggccac tatcactcca gccaacctca gtaccgcccc
     2521 atcccttctg tccatcacag ttcacaccta aaccaaccac tgccacagcc tgcacagcac
     2581 acaggttatc aagttatgcc caaccagcag caaaactacc aaggaatagt tggagttcag
     2641 tcaccgcaga gtcagagcct catgggaggc cagccaaaca gcactggacc tcatatccaa
     2701 ggagtagtca tcccctaccc ctcagtgcca tcgtatcagg tttcactgcc tcaaggttct
     2761 caaggaattg cccatcagac ttaccaacag cctgttgtgt tccctaatca gtctaatcaa
     2821 ggatctctgc ccacagcagg aatgccagtc tactacagtg tcattccacc tggccaacaa
     2881 agtaatttaa gctctgcagt cggttactta caacatcctg ggtcagaaca agtacagttt
     2941 cctcgaacca catcaccatg cagctctcaa cagctccaag gccaccagtg tgcagctttg
     3001 ccacagcagc cacctggtgg aggaatggtg atgatgcagc tcaacctacc aaacaacgca
     3061 ccgtcccgag cgcactcacc cccacagtgg aagcaaaaca agtaccactg tgaccatcag
     3121 agagggcaga agtgtatgga agtgagccac atggacagta ttgtccagca cagcccgcag
     3181 ctcagcagcc ccatcctttc tcctgtgcag tcaccagcac cagcgcagct gtccgctcta
     3241 aagaccaccc gtccctccgg gccgccgctt tccatcgtgt cccagttcgc tagacctttt
     3301 gttcctgggc agggagatgc caggtatccg ctgcttggcc agcccctgca gtacagccct
     3361 cctactcttc tgcatggaca cattccacat caacagggtc agtctggcag caggcatgga
     3421 aaccgaggac gtagacaagc taagaaagct gcatccacag accttggagc aggagaagca
     3481 gtcgtcggca aggtcttgga gatcacagaa ctaccagacg gaataactcg aatggaagct
     3541 gagaagcttt ttggggaact ctttaaaatt ggcgccaaga tccgatggct ccgggacccc
     3601 cagtctcagc cccagctacg tcgtcatcct ctttgctgtg gtagtgggga taacactgtc
     3661 aaccccgagc gctctaaacc cagtgacctg gcctctacat acactgtcct agccacgttc
     3721 ccctccattt cagctgcaca gagtgcactg aagaagcaga tccattcagt gaacaagttt
     3781 aagctgagaa tgagcaagaa gcactacgac ttccacattt tggaaagggc aagttctcag
     3841 taaaccagcc gctacctttg gaccccactc tagaattccc tgccctctcc catctgattg
     3901 gcttgttaag tggagcgtat gtaatataga gactcctggg atgtttggcc gaattacagc
     3961 ttttggaaga aagtccaggg acccagtgaa gggagggggg agatacccat ttcaccccag
     4021 tgactatagg aatccacaca ggaatgatac agagttagca gcgttctcta aggaaatgct
     4081 gttcagatgc ctcctaactt ttatagttat tttgttttat atttctgaat tcttgtatca
     4141 gatccaaagc tctattgtac agcaaattat tcttcaaagt gattataacc agttgcagcc
     4201 tgtatttctt tttgcagcca gcacagtgtg aaccaactca aactttggga gaaaaagaat
     4261 gcaggagtgg aataaccaag tcaaaaccat gtcaaaacta tcctctgggg ggctctgagg
     4321 gtgctaagga gacccacaaa taaacaatga ctcctccact gaattgctaa acacagaaaa
     4381 ctttccagga aatccagaac tccccaacag ggtccttcct tcttcattta ggtagtatgg
     4441 ctgttaagtg taaggtaaat tatgttctca atgcctctta atcaaaccac ttaggttaaa
     4501 aagaaatagg aatcatccta ggcaggaaaa ttattccact tttttttaag tgtccttcca
     4561 ataactaaat gccgctcgtc agcattgtcc tctttggaaa ttttgtctcc tgaggaaatg
     4621 cacttgacga gtgctgaaac ttcttaagtg gtttaaattt tgttttcatt gtttgcagcg
     4681 gattactgga catcaaagat tcattgcact tatgaacaag gaactttatt ttcaatttct
     4741 gtgtaatttt gcaaggctgt acaatgtgct gatgcaagcc tttttcagtt caagagaata
     4801 aatgtttaca aatgtag
//
