LOCUS       XM_039101422            3160 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus R3H domain and coiled-coil containing
            1-like (R3hcc1l), transcript variant X1, mRNA.
ACCESSION   XM_039101422
VERSION     XM_039101422.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101422.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3160
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3160
                     /gene="R3hcc1l"
                     /note="R3H domain and coiled-coil containing 1-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 28 ESTs, 1 long SRA read, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 100 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:293953"
                     /db_xref="RGD:1307934"
     CDS             16..2451
                     /gene="R3hcc1l"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein R3HCC1L
                     isoform X1"
                     /protein_id="XP_038957350.1"
                     /db_xref="GeneID:293953"
                     /db_xref="RGD:1307934"
                     /translation="MGGAKAWRAPQRRAEEQALHRGGGSGELQRPDQSGAMQQEAERC
                     RVRTKRPDMALYVPKARRGAALLKSGDQEENQGPPAFVLREQKEDCLPQKTSTSKPES
                     HRLSAGQSGRKDSNCREGKRSPPKLRKDRSPPKRNKEKACSKRGTGKPIDASSQEHQN
                     SAHDAAAVSSIPLRRLFKPKEMECVEVQTSGGTGPWGVPPSQSSSEVSAAQVPNRPFQ
                     NVELCDFSGETFVNRNLESSIVTEAKVMELVSQFPQVVTTMLKPDGMAMPGTLSSDSE
                     TAPYGVETSHGMSKHSPGNISAISVPGEPDDAAHPTFVDFEAESESTVNSTESVLGQN
                     GVDSISETMGNVSLKMAIVSKLESTNGIIDPAVTGECGNDSSADELCVKSEPSDTVDL
                     VHEIDTGNGFRDVCDSASKAGMVDIAGTVCDPVTVGSPCTAAVRESGESSGNMRNSSD
                     YIEMSADVARLDSAKSETNSENSSSLNACSDIYAGSIASGFTASTGKLTESVPDCASS
                     LPIKKTADSDITPCLDSELSMSNGSGILVESALASDLDTTEEMTEALHDLRTAEEFKT
                     KEEDDSESRVCGIPFSDSSVDTSVGLKTTDTSHTQGSIAVEESWESMFNDDGDCVDPR
                     LLQELSGNMKNRKSIQEPRFDYYNHELPDIDLSECEFPHVIEIYDFPQEFRTEDLLRI
                     FCSYQKKGFDIKWVDDTHALGVFSSPIAARDALGIKHTMVKIRPLSQATRAAKAKARA
                     CAEFLQPAKERPETSAALARRLVISALGVRSRQSKTEREAELRKLQEARERKRLEAKQ
                     REDIWEGRDQSVV"
ORIGIN      
        1 aggaggccta gcggcatggg cggagccaag gcctggcgcg caccccagcg gcgagcggaa
       61 gagcaggcgc ttcaccgagg cggcggaagc ggagagctac agcgtcccga tcaaagtggt
      121 gccatgcagc aagaagcaga gagatgcaga gttcgaacca aaaggcctga catggcactt
      181 tatgtaccta aagctcgaag gggagcagct ctcctcaagt caggtgacca ggaagaaaac
      241 caggggcctc ctgcctttgt gctgagagaa caaaaagaag attgtcttcc tcagaagact
      301 tctacaagca aacccgagtc ccacagacta agtgcaggtc aatctggtag aaaggatagt
      361 aactgtaggg aaggaaagag atctccacca aaactaagga aagacaggtc cccaccaaaa
      421 aggaataaag agaaggcttg ttctaagaga ggaactggaa aacccataga tgcctcatcc
      481 caagaacatc agaacagtgc tcacgatgct gcggctgtat ctagcatacc tttacgaaga
      541 ctttttaaac caaaggagat ggagtgtgtg gaagttcaga cttcaggagg gacaggaccc
      601 tggggggtgc ctccatcaca gtcttcctca gaagtcagtg ctgcacaggt tccaaacaga
      661 ccgttccaga acgtggaact ctgtgatttc agtggggaaa cttttgtaaa tagaaatttg
      721 gaaagcagca ttgtaactga ggccaaagtt atggaactag tctctcagtt tcctcaagtt
      781 gttacaacta tgctgaaacc agatggtatg gctatgccag ggacactaag ttctgattct
      841 gaaactgcac cgtatggtgt ggaaacatca catgggatgt caaagcacag tcctgggaac
      901 atctctgcaa tttctgttcc tggagagcca gatgatgctg cgcatccaac ttttgtagac
      961 ttcgaagctg aaagtgagag tacagtcaac agtacagagt ctgtcttggg tcaaaatggt
     1021 gtagattcca tttctgagac tatgggtaac gtttctctta aaatggctat agtcagcaag
     1081 ctagagagca caaatggtat tattgaccca gcagtgactg gagagtgtgg gaatgacagc
     1141 tctgctgatg agttgtgtgt gaagtctgaa ccttccgata cagtggacct tgttcatgaa
     1201 atagacacag gtaatggatt tagggatgta tgcgacagtg ccagcaaggc aggtatggtg
     1261 gacattgcag gtacagtttg tgaccctgtg actgtaggca gcccttgtac agctgcagtt
     1321 agagaatctg gtgagagtag tggcaacatg agaaattcct cagattatat agaaatgagt
     1381 gcagatgtag cccgacttga ttcagctaag agtgagacga actctgaaaa cagtagcagc
     1441 ctaaatgctt gctcagatat ttatgctggg agtattgcat ctggttttac agcgtcaaca
     1501 ggaaagttga cagaaagtgt gccagattgt gcttcctctt tacccataaa gaagactgct
     1561 gatagtgaca ttaccccttg tctggactct gaactgagca tgtcgaatgg atcaggcata
     1621 cttgtggaga gtgccttggc cagtgatctg gatactactg aggagatgac agaggccttg
     1681 catgacctaa gaactgctga agaatttaaa acaaaagagg aagatgactc agagagtaga
     1741 gtgtgtggca taccattttc tgattcatct gtggacacat ctgtaggtct aaaaacaaca
     1801 gatacttctc atacacaagg aagtattgct gtggaggaaa gctgggagtc tatgtttaat
     1861 gatgatggtg attgtgtaga ccctcgtctt ctacaagagt tatcaggaaa tatgaagaac
     1921 agaaaaagta tccaggagcc tagatttgat tattacaacc atgaacttcc tgatattgac
     1981 ctcagtgaat gtgaattccc acatgtcatt gaaatttatg actttcctca agaatttcgt
     2041 acagaagacc ttttgcggat tttctgcagt taccaaaaga aaggatttga tattaaatgg
     2101 gtagatgata ctcatgcctt aggagttttc tccagtccaa tcgcagctcg agatgccctg
     2161 ggtattaagc ataccatggt gaagatccgg cccttgtcac aggccacaag agcagccaag
     2221 gccaaggcta gggcttgtgc tgagtttctc cagccagcaa aggagcgacc tgagacttca
     2281 gcggccttag ccagacggct ggtcatcagt gcccttgggg ttcgaagcag acagagcaaa
     2341 actgaacggg aagccgaact caggaagctg caggaagccc gagaaagaaa acgactggaa
     2401 gccaagcaac gggaagatat ctgggaaggc agagaccaat ctgtggtttg aacatcactt
     2461 actcaaagga atgaatccat ggattaggat gtgtttgata ttcttgagac aagaggatct
     2521 ttccagagct gtgcacatgc agatgagcat gttaaagaaa acgggaacaa gacagaagac
     2581 tggagggctt agagagaacg agcagtccag tcctcactcc tgaattcaga cctgtccact
     2641 ggagtagaga tgttaacagg cactgtcgga ggaaggaaaa tggaagaagt ggctttctaa
     2701 gagtcctgtg tggagcaggc catgttagtg tgggtcccgc ctccaggaag tctgaagcaa
     2761 atgtaaagca aaacagagga ttcgagcctg cagtgacagg agttggaggt ccatggcagg
     2821 gtgttcctca gtacttcaga gttgagcact gcagaattag gacagtaagg ggaagtggaa
     2881 gcaactccca gacacgagtg cctggtgcac cgggcacggg cagagactac actgctggct
     2941 gcagaactcc aaagccactg acccttcggc acatcgtggg cattcggact cctgagtttg
     3001 tactaagctt ggtgtctggc actgttccag ctacacggca gccaggggtc tgccacctac
     3061 cttcctcatg aagaccagtc ctaggagctg agtgccagct ccagtttaat cagtgatatg
     3121 ttgtgagagg gagaaattaa aggctatttt ataacataaa
//
