LOCUS       NM_001399508            1741 bp    mRNA    linear   ROD 13-JAN-2025
DEFINITION  Rattus norvegicus R3H domain and coiled-coil containing 1 (R3hcc1),
            transcript variant 2, mRNA.
ACCESSION   NM_001399508 XM_039093939
VERSION     NM_001399508.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1741)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Jan 10, 2022 this sequence version replaced XM_039093939.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.418058.1,
                                           SRR22582416.987025.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            non-AUG initiation codon :: inferred from conservation
            RefSeq Select criteria   :: based on manual assertion,
                                        conservation, expression, longest
                                        protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-98                JAXUCZ010000015.1  51191543-51191640   c
            99-226              JAXUCZ010000015.1  51191200-51191327   c
            227-364             JAXUCZ010000015.1  51190698-51190835   c
            365-1103            JAXUCZ010000015.1  51189216-51189954   c
            1104-1276           JAXUCZ010000015.1  51188322-51188494   c
            1277-1347           JAXUCZ010000015.1  51186666-51186736   c
            1348-1443           JAXUCZ010000015.1  51185397-51185492   c
            1444-1741           JAXUCZ010000015.1  51184328-51184625   c
FEATURES             Location/Qualifiers
     source          1..1741
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p11"
     gene            1..1741
                     /gene="R3hcc1"
                     /gene_synonym="RGD1311790"
                     /note="R3H domain and coiled-coil containing 1"
                     /db_xref="GeneID:361064"
                     /db_xref="RGD:1311790"
     exon            1..98
                     /gene="R3hcc1"
                     /gene_synonym="RGD1311790"
                     /inference="alignment:Splign:2.1.0"
     exon            99..226
                     /gene="R3hcc1"
                     /gene_synonym="RGD1311790"
                     /inference="alignment:Splign:2.1.0"
     CDS             117..1577
                     /gene="R3hcc1"
                     /gene_synonym="RGD1311790"
                     /note="non-AUG (CUG) translation initiation codon"
                     /codon_start=1
                     /product="R3H and coiled-coil domain-containing protein 1"
                     /protein_id="NP_001386437.1"
                     /db_xref="GeneID:361064"
                     /db_xref="RGD:1311790"
                     /translation="MALLCLDGVFLSSAENDFVHRVQEELDRFLLQKQLSKVLLFPPV
                     SSRLRYLIHRTAENFDLLSSFSVGEGWKRRTVICHLDIRVPNSDGPSGPCRPPASHPS
                     KYRGPRYTSHQGAAAGPRGAPAGRWHRGRKPDQPLYVPRVLRRQDEPVAPSIPSLKGE
                     DPAGGVSEEPREGGAAEAEADQGVPMLVTQETELLERPDPGYANEPQLELGDAEPSED
                     PEKEHGAEATVQQGSSPQLAMEEENRSQGMQSLVNQEEKVEGEEKEKVDEKEEDIGRQ
                     KERVGEEEGKTDVQNGQVDAEEEKMDEDEDKADGEEDNKDDADLDHFSELLQEITANL
                     TEKEIEIEKIHLDTSAFTEELPGERDLTHLVEIYDFKPTLKTEDLLATFSEFQEKGFK
                     IQWVDDTHAIGIFPCPASALEALAKDFSVLKIRPLTQGTKQSKLKALQRPKFLRLAKE
                     RPQTDSAVARRLVARALGLQQNKKKELPTPPSLLPS"
     exon            227..364
                     /gene="R3hcc1"
                     /gene_synonym="RGD1311790"
                     /inference="alignment:Splign:2.1.0"
     exon            365..1103
                     /gene="R3hcc1"
                     /gene_synonym="RGD1311790"
                     /inference="alignment:Splign:2.1.0"
     exon            1104..1276
                     /gene="R3hcc1"
                     /gene_synonym="RGD1311790"
                     /inference="alignment:Splign:2.1.0"
     exon            1277..1347
                     /gene="R3hcc1"
                     /gene_synonym="RGD1311790"
                     /inference="alignment:Splign:2.1.0"
     exon            1348..1443
                     /gene="R3hcc1"
                     /gene_synonym="RGD1311790"
                     /inference="alignment:Splign:2.1.0"
     exon            1444..1741
                     /gene="R3hcc1"
                     /gene_synonym="RGD1311790"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggtgtcacg ggtttccgcc tgggatcgcg gatgggaagg acggctgagt gttgtggggc
       61 ggtttcagcg ggctgcgcct aagaactgaa aagctaaggc tctgccatct gtcaccctgg
      121 cccttctctg cttggacggt gtcttcctct cctcggccga aaatgacttt gtccaccggg
      181 tccaggagga gctcgatcgt ttcctgctgc agaagcagct gtccaaggtc ctacttttcc
      241 ccccagtctc cagccgcttg cggtacctga tccacagaac agcagagaat tttgatctct
      301 tgagcagctt ctctgttggg gagggctgga agaggaggac agtcatctgt cacctggaca
      361 tcagagtacc caattcagat ggcccctctg gtccctgccg tcctcctgcc tcccatccca
      421 gcaagtaccg tggtcctcgg tatacctcac atcagggtgc agctgctggt ccccgaggtg
      481 ctccagctgg ccgatggcat cgtggacgga agccagatca gcctctgtat gtgccccggg
      541 tgctacgcag gcaagatgaa ccagtggcac cctccatccc cagcctcaag ggagaggacc
      601 cagctggtgg agtttcagaa gagcctagag agggcggtgc tgcggaagct gaggctgatc
      661 agggagttcc catgttggtg actcaagaaa cagagctcct tgagcgccca gatccaggct
      721 atgcaaatga gccacagctg gagctgggtg atgctgagcc ctctgaggat cctgagaagg
      781 aacatggggc agaggcaacc gtgcagcagg ggtccagccc gcaactggcc atggaggagg
      841 aaaacaggag tcaagggatg cagagcctgg tgaaccaaga ggagaaggta gagggagagg
      901 agaaggagaa ggtggacgag aaggaagagg acataggcag gcagaaagag agggtaggtg
      961 aagaggaagg gaagacagat gtgcagaatg ggcaggtgga tgcagaggaa gagaagatgg
     1021 atgaagacga agacaaggcg gatggggagg aagacaacaa ggacgatgct gatctggacc
     1081 atttcagtga gctgctgcag gagatcacag ccaacctaac ggaaaaggag attgaaatag
     1141 agaagatcca cctggacaca tccgccttca cagaggagct acccggggag agggacctga
     1201 cccacctggt ggagatctac gactttaagc caacactcaa gactgaggac ttgttggcca
     1261 ctttctctga gttccaagag aaggggttca agatccagtg ggtagatgac actcatgcta
     1321 tcggcatctt tccctgccct gcctcagctc ttgaggcact ggccaaggat ttctccgtgc
     1381 tcaagatccg gccactcaca caggggacca agcagtcgaa gctgaaagcc ttgcagaggc
     1441 caaagttcct gcgactagca aaggagaggc cgcagacaga ctcagcagtg gcccgcaggc
     1501 tggtggcccg ggccttgggg ctccaacaaa acaaaaagaa agagctgcct actcccccaa
     1561 gtcttctgcc atcttgaggt cccgggccca gctgtctgaa ctagactggg ccccaacacc
     1621 acacgccttt acggatacca gggcagcccc ttgctctcac tagagctgct atggggcaca
     1681 gcaggcttta gttggtctgc tcccagaaat tgagaagaaa taaaaattta aagttggtgt
     1741 a
//
