LOCUS       XM_039086917            6476 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus QKI, KH domain containing RNA binding
            (Qki), transcript variant X3, mRNA.
ACCESSION   XM_039086917
VERSION     XM_039086917.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039086917.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6476
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6476
                     /gene="Qki"
                     /gene_synonym="Qk"
                     /note="QKI, KH domain containing RNA binding; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 101 ESTs, 8 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 146 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:499022"
                     /db_xref="RGD:1584886"
     CDS             213..1166
                     /gene="Qki"
                     /gene_synonym="Qk"
                     /codon_start=1
                     /product="KH domain-containing RNA-binding protein QKI
                     isoform X2"
                     /protein_id="XP_038942845.1"
                     /db_xref="GeneID:499022"
                     /db_xref="RGD:1584886"
                     /translation="MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERL
                     LDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRI
                     LGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDA
                     QNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPTAQAAP
                     RIITGPAPVLPPAALRTPTPAGPTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLI
                     YTPYEYPYTLAPATSILEYPIEPSGVLEWIEMPVMPDISAH"
ORIGIN      
        1 gcggcgcgtc gggccgggcg aaagtgcctg cggggggcgg gcgggcgcgc ggagccggcc
       61 gccccggggc tcggcgcggg agccggagcg ggagccggcg cggagcggga cgcggtgtcc
      121 cgagcggccg gcggccggag ctcgcccccg cccctccctc ctctcctccg gcggcggcgg
      181 cggcgggcgg agtgagctgc ggagcctgga atatggtcgg ggaaatggaa acgaaggaga
      241 agccgaagcc caccccagat tacttgatgc agctgatgaa cgacaagaag cttatgagca
      301 gcctgcccaa cttctgcggg atcttcaacc acctcgagcg gctgctggac gaagaaatta
      361 gcagagtacg gaaagacatg tacaatgaca cattaaatgg cagtacagag aaaaggagtg
      421 cagaattgcc tgacgcggtg ggacccattg ttcagttaca agagaaactt tatgtgcctg
      481 taaaagaata ccctgatttt aattttgttg ggagaatcct tggacctaga ggacttacag
      541 ctaaacaact tgaagcagaa acaggatgta aaataatggt ccgaggcaaa ggctccatga
      601 gggataaaaa gaaggaggag caaaatagag gcaaacccaa ttgggagcat ctaaatgaag
      661 atttacatgt actaatcact gtggaagatg ctcaaaacag agcagaaatc aagctgaaga
      721 gagcggttga agaagtgaag aagttactgg tacctgcagc tgaaggagaa gacagcctga
      781 agaagatgca gctgatggag cttgcaattc tgaatggcac ctacagagac gccaacatta
      841 aatcaccaac tgcccaggct gctccaagga tcatcactgg gcccgcgcct gtcctcccac
      901 cagctgctct gcgtacaccc acgccagctg gccctaccat aatgcctttg atcagacaga
      961 ttcagaccgc tgtcatgcca aacggaactc ctcacccaac tgctgcaata gtccctccag
     1021 ggcctgaagc tgggttaatc tacacaccct atgagtaccc ctacacgttg gcaccagcta
     1081 cgtcaatcct tgagtacccc attgaaccca gcggtgtgtt agagtggatt gaaatgccag
     1141 tcatgcctga tatttcagcc cattgagttg ctggatgaag gactagaata cagcagctgt
     1201 tataacacga ccagtcaatg tggaaaacaa aacaaaaaaa caaaacaaaa aaaaatgttt
     1261 ctgtgcaacc ccactgtttt accagacaga atctgaaacc tttttgtgta tgaccttggt
     1321 gctgtgtgcc tgctgttgac tcctaggact ttgatcttta aaggttccct cctgatcccg
     1381 gcttaatatt aatttgaaaa tctttaatga acttggacat tgagatttaa acttgaaaat
     1441 tcattgttca tttaaagaaa gccacaatgc tctgtatgtt atctgtgtgt gtgcatgcac
     1501 ttaggtgcct tttgtttata aacatacatt ttattgtaca tgttttctgt ctaaatcatt
     1561 gtataaaata attataagtc agaattatac cacagaaatg ttagtaagag gctgtgttct
     1621 gttgcacatt acttgaagca tttttaaaaa aaaaaataac atgtaaccta taaccttatt
     1681 taagttttcc tttctattaa tactctgtcc tgtggccctg tgcatgctcc ttccccagaa
     1741 ctcctctctg ctgcactcac agcatctgtt actgaggagt tagggctctc agcttccagc
     1801 tgctgctcct gactgttagt gcaagagctc ctagttttgc aagatagaat tacatttcta
     1861 tgcagtctgc ttatctaaaa tgaaaaatag gttttcaacc agtttactgc ttagagacag
     1921 caagaggcac tgctgtagaa tttccccatt gtaaagcaac atgttgtttg gtttggtaag
     1981 aatgtatgtg tatatgtgtg tgtgtataca cacacacaga cacacacaca cacacacttg
     2041 aaaccaacac tattaagagc aaaatacata tgcagatacc caattaacat tgtcaaggtt
     2101 ctcaataagt accaagtaag aaattattat tattattatt attattatta ttattattat
     2161 ttcttgcttt gccacctaag cagtaaaact atgatatttc tctttggaga actgaggaaa
     2221 ttattttaaa ttcccaagtt atagtatatt tgcacacaga taacatgcat gttatgtgtc
     2281 aaatctcaca ttattttaaa ataagcagtg cccttcaaaa cagatgcaga catatgtgtt
     2341 ggtggtagtg aggagattgg tattagcatc aaatcttcat tgatgactaa tgtttaattc
     2401 ccttcctttt atctttaggt atggctttcc caacgaaagg ctaagaattc aagaacggtc
     2461 ttaaccgaac cctcatcaga tctgaattta accaatgctt agtctcagca gcctccggga
     2521 caaaccttag cctagcagtc agtgacttac ttgcactttt tgcacataga cataaagtaa
     2581 aatgatgcta ttaatttgga ttagtctgta atactacaaa gcaacggtaa tttataaagg
     2641 agtgtataga agtatactga ctgctaagtg tactgtactg tttgctttac taatcaccta
     2701 attcattgca gttcatactt attgactcaa aagtttaaat ccacaatctg taggctttaa
     2761 gagttgcttt taaaaccttt tttaagtaat aaactctgaa agttaaggta gcaaataatt
     2821 gtcagtatta aatgtggcaa gtagtcctgc tgcaagaaag gcacttcagt gactatgtga
     2881 ctagtaaagc tcagacacgt ctggttctaa tagagctcgt gagatactgt gacctgggga
     2941 ctgtaaatga aggggtgaag taggtagaag gccaacctgt ttgaaatgaa tgcaatattg
     3001 atagatacat agacatgaca tactgcagtt gattttaaaa ctactgtgcc ttaacgtgtt
     3061 tcttaagctt ttgtagtaag tgaacatttg agatccattt tgataaacct gctgtcaatg
     3121 tttcccttat gtatgttttc taactttgtc ttggtaattg caatttaact aggtgcggtg
     3181 gctactaaag ttcgaaggca cgatatgcgt gtccatcctt accaaaggat tgtgaccgca
     3241 gaccgaggtt agtttagttc tgcagttctt gtttataacc aatgtgctgg gtgtccataa
     3301 agtttgcaac accacacctg atggaaaaat gtaactgttt acctgcacac cgttttcttt
     3361 tccttcccta aattaattta ataattgatt taaggttggt ttggttttat ggttttgttt
     3421 atggttttgt tttttggttt gggttttcac ccctccccat tatattttaa tttattaaat
     3481 cttctattat gatttattcc agctaaaaca taaactagtc aatttgggga actattaaat
     3541 ttttacttta ccatagcaat ttttaataat aattgttgtt aaaactttcc ctttaattat
     3601 tctgaagatt tctgttggta ctacaaaatg aattgaacag atgatgtttt taatgagaga
     3661 agtaaaaaaa aatttgcttc catgtaattt tggagaaact gaacatttag tttccatttt
     3721 ttctatatta taaaacattg agccactgta taaatatgag ggtatacatg tcaagtactt
     3781 agctaaaagc aacagtcagg actgtgaaga taattttcat ctaggtggat actttatgaa
     3841 tagaaaatga gttccctctt actctatttt cttgccaaaa cggatccttt gagttttgtc
     3901 atttgctgct aaaatatagt acccgaaggt aaactcccct gaagttctgt ggtatgtgag
     3961 atccagctat ttggatatcc tttctgacta acctgtgact ggaatcaagt cttcattttt
     4021 ctcattttca tatttgtaac ttgtgcccta tatatgccct gggacccatt tttaaattat
     4081 ttatgcttat ttgaggagtg atagtttcgg ttttttgaca ttgaattgtg tttttttttg
     4141 ttgttgttgt tggttttttt ttgttttttt ttttttttac ctttttgtgt ggttcttttg
     4201 tttttgtgtt tttaattgca agattggaat cccaagcata gtagacattg ttaccctact
     4261 cttgaataac caccaaaata aatactgcac acaattgctt ttgtatatta gaaataaaat
     4321 acccttccaa agacatcagt gatctttatt tagtaccata tatactaaaa gagtcctgaa
     4381 aactttagct aacatacaca tttttgtagt ggttattcat tgaaccaatc tgggggcata
     4441 tccataacaa taataccaca tgcagttatg ccaagtgtga gcatatcaac cattctctca
     4501 gagtcacata gagatgagga agttagatgg gtcaggtcac ttgagatgtg ggcagtctca
     4561 tacataattt gaagctgtat cttactgcta aagtctaaaa tgattatctt acagagtgtt
     4621 ttgattgtga agtaattttc cccctttagg gtttgctttt tttttttttt ttgggggggg
     4681 ggggtcccgt gttccttcct cttagatttt ttttttttgt tgttaacaca ataatccttc
     4741 ctcactttgt actccagagc cttcagacag ttgaaagtat tagaccaaga tcttattgta
     4801 tttggaaaat gacaacacat tccatgcatg gctcatctgg agctgtgttt attttgatta
     4861 gttctgtttg tgttaaaaaa tgcagtgtca gcaaaccgaa acgtcttcat ccccctgctc
     4921 ctccatccct ccatcccaac cttttccttt ctttttctag aaacagatca cttatgcatg
     4981 cacatgatca ccacatgtac tcactgggtc taagggcgag aaccgaagcc ctcgacttac
     5041 attattttat gatactactg ttttttgttt ttttattttt ttatttttaa tcctttaagg
     5101 agaagagtat tattagcatt catttgatgc aaggaagcag cccgaggaca atataaccat
     5161 gtaactatat gggagcattt agagtagttg catggttgac aagtatctag ttgcttacta
     5221 aaacaaaccc acctccacac ttatttcaaa atcagtttga aacttaaaga ccaactgact
     5281 ttatagttgt agtgaactat acgtgatttt gcacagttga catacctgtg tgtactgtag
     5341 gagtccagga catggcagag gatgtatttt tagatgtact ggatatgatg atgtactttg
     5401 ttaaataatc cagactcaaa cgtaatcaga aattatccaa gtaatgattt gacaaaaacc
     5461 attacttaca aaaatttaag actttggaac agcgtttttg gttttgtttt aaatttaaat
     5521 aaaattctgc ttccttttaa gaaattcagg gaagatttga ttatattgaa gatacaatat
     5581 ttttgtagta tttataaact gtcctaattg atagactata gaaaccattt ttgtcataca
     5641 gaggtaaata ggtctattat atagaacatt taaaccttgt gaacattaca cctactaggt
     5701 ttgatttatg aagtggcata gtatctaact tgcactgagc atcttttcat tcacatctct
     5761 cctgcctttg tctcaatggc aacagtacag aaaattctgt caaacctcag aatatagtag
     5821 aaataattaa gctgttgaat gagtcttaaa cattatacta ctgttaagtg gaccaagttt
     5881 ggtgaagtag aatgtgagag gctgattaaa gaaggagcta ctcacggaca tttggagtga
     5941 taacttttcc acttgagaac tactttatgt tttactgtaa ttttttaaag tttttttttg
     6001 ttcttttttg ttactttgca aaagaaaata gtatttacag gtggcttctt ttaaaatata
     6061 aaaatataaa gcaggaatgt atatgaaatg tcagatttta ttgtatttgc agagtattag
     6121 ctttgaaatt gaataaagaa agctgtttgt agttttaaaa atgccttctt ggtatcagtt
     6181 agaaatttct tctatttttt atgtacgtag agttctttga ggtatagagt tttaaatgca
     6241 ggattttaca gtgtttacat gcaagtgcat tttataagtg ttctttatgt gtaaattagt
     6301 attttcaact ggaaaatgtt ggctggtgca aaaaaggcct ggcctttttc tggttcccat
     6361 gatgttgcct acactgctag actacagtat tgctttgtat catgaggcca agaatcccat
     6421 gttgtttgta aataggataa ttgaaaaagc aataaacatt tattgaacaa aagaaa
//
