LOCUS       NM_001024370            2474 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus PIGY upstream open reading frame (Pyurf), mRNA;
            nuclear gene for mitochondrial product.
ACCESSION   NM_001024370 XM_578280
VERSION     NM_001024370.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2474)
  AUTHORS   Murakami,Y., Siripanyaphinyo,U., Hong,Y., Tashima,Y., Maeda,Y. and
            Kinoshita,T.
  TITLE     The initial enzyme for glycosylphosphatidylinositol biosynthesis
            requires PIG-Y, a seventh component
  JOURNAL   Mol Biol Cell 16 (11), 5236-5246 (2005)
   PUBMED   16162815
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC086361.1, JAXUCZ010000004.1 and DV720704.1.
            
            On Dec 18, 2012 this sequence version replaced NM_001024370.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC086361.1, SRR26643291.12589.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1118              BC086361.1         1-1118
            1119-1953           JAXUCZ010000004.1  88834288-88835122
            1954-2474           DV720704.1         1-521
FEATURES             Location/Qualifiers
     source          1..2474
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q24"
     gene            1..2474
                     /gene="Pyurf"
                     /gene_synonym="Pigy; Prey; Pyurfl1"
                     /note="PIGY upstream open reading frame"
                     /db_xref="GeneID:502782"
                     /db_xref="RGD:1565524"
     exon            1..286
                     /gene="Pyurf"
                     /gene_synonym="Pigy; Prey; Pyurfl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             90..428
                     /gene="Pyurf"
                     /gene_synonym="Pigy; Prey; Pyurfl1"
                     /note="protein preY, mitochondrial; PIGY upstream reading
                     frame-like 1; phosphatidylinositol glycan anchor
                     biosynthesis, class Y"
                     /codon_start=1
                     /product="protein preY, mitochondrial precursor"
                     /protein_id="NP_001019541.1"
                     /db_xref="GeneID:502782"
                     /db_xref="RGD:1565524"
                     /translation="MLTTTCRRLSQALQRPHALSAVAQRCLRAPGARSYADQNEKAEQ
                     PRTFHPALLQFLVCPLSKKPLRYDASTNELINDELGIAYPIIDGVPNMIPQAARTTRQ
                     KEKQEETKQH"
     exon            287..2474
                     /gene="Pyurf"
                     /gene_synonym="Pigy; Prey; Pyurfl1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccgggccag ggtgacctgg ccgctaggcg ctgggaaaga aagcagtgga gaagttcgga
       61 acgcggcctc ttcagcagtc agagccgcca tgctgaccac cacgtgccgc agactctccc
      121 aggcgctgca gaggccgcac gcactgtctg cggtcgccca gaggtgtctg cgggcgcccg
      181 gggccaggtc ctacgctgac cagaacgaga aggctgagca gccccgcacc ttccacccgg
      241 cgctgctgca gttccttgtg tgtccgctct ccaagaagcc gcttagatat gatgcatcga
      301 caaatgaact gattaatgac gagttgggaa tagcatatcc aatcatcgat ggggtcccta
      361 atatgatacc acaggcagca aggacaacac gtcaaaagga gaagcaagaa gaaactaagc
      421 agcactagac cttaattgtt gaaagcataa ttactgagtt cccgtaatac tgtatacctt
      481 taatacggag aaggggggtg gggcagaacg gtgattctgc ttcagcctgt ttgactgttc
      541 ttcccctact ctccctagca ggattgttct gatctgcttt tctggaggag aatttcccac
      601 agggctgcat gggcacagac aggctttgct tttacagtct gctcttgcca gctaccatgc
      661 caatgtgtat cttcctccac ctttgaaacc agatagggct ttaagcatag ttaatacaac
      721 cacagccagg atggctcatg cattattaag aggtctgcag ccacatctgt gaaaactaca
      781 tataaacccg tttggtttat aaaacgatct gttggtcttc tctctctcag gcttatgacc
      841 aggagacagg ctatgaagct ttttcataaa tcttctatcc ttgtcttttg aagatttcag
      901 tgaaatgtct caatgcagat taacagcacc catcattagc cgaggcctgc ttcgcacaca
      961 ttcatttgaa agttagtcgt ttgaaatgct gtttagcgtc aaggtcgatg ataagcgtaa
     1021 gaactaagaa aatcctgaca ttgtaaactt gccttcatta ctttggcaca catgcttaca
     1081 tcaataataa aacaagatgc tcacagtcta ccaccaaacc cagtgtgccg gggtggaagg
     1141 atgtctgttt gaatggatgt ttttatctca agagtccgat agtaaaagaa aatgtgaaaa
     1201 tcgtttacat aactacattt tgttcacaga ggcgtttaat attcagaata gaataatttc
     1261 ccaggaaagt gaggtccctc cagtaggtaa ggtcagcaat ggaaagctgg ctatatcctt
     1321 ctaattttag tgattcaggg gacgctccag tttttcttgc cctggaaaat ttgataagtc
     1381 ctcaggcctt tagccttagt ttttctagaa ctgtaacaga aatgattgag ggtgatatag
     1441 tacctacttt agaagcatag agtggacgtt ttaactctta ccctaaagaa aggtaagaat
     1501 tggttgtaaa tttaattgtt tgcacacacc ccagcccaag gccttgtgca tgctaggcaa
     1561 gtgtgtggcc actgaaatcc tctacccttg atttattaat ctgctttctc tttatgttgg
     1621 gtaggggcat agcataggaa tgtcacagga catatttgtg tctctctttg caccattggg
     1681 tgctagagcc ttaactcagg tggttgagtt ggtggtaaaa tctttatcat cctaattgtc
     1741 tcaatggcct ttaattgatt cttaataagc tagcctccta atctataaaa gatgtgcacg
     1801 attctccctg ggaaagagaa aattaaaacc tgtcatacat gttttctatt atattgtcag
     1861 tttcatcaag tataagtcac attcttttct gtggcaacat agagctgaat tagatgatcc
     1921 agtgtctcca ttcctgaagt ggacttttta accctgaatt tcacatttag ccaactgaag
     1981 actgtggaca atgtaactta acagttttgc tcataaagct agtgttaatc tgataagtca
     2041 gttgcagcat ttttagctta atcatctgac gagatgtcag gatgctgaca agttgtctct
     2101 aagtcagtat ttattctctc atcaaagaat ctacatgtac aaggaaccct gggtgcagct
     2161 gttggcatag tacacagtct ttagtctcag agcctggaga ggatgggcaa gtaagcctgt
     2221 cagtattgac ctgaacaagg gagttccgct gaatcccagt aattgagagg agcacaggat
     2281 caggaagtca gttaacgaca tcctgaacta gagaaccctt tatcaaaacc ctatctaagc
     2341 tcattaggtc accaaagaag acaagcaaga aaaggaaggt gtttcaatgg gaggggcatt
     2401 aaaagggtac tgggataaac atgttcagaa cacattatat acatgaataa aaacaacgtc
     2461 tattgtgcat aatt
//
