LOCUS       NM_001108986            1164 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus PYM homolog 1, exon junction complex associated
            factor (Pym1), mRNA.
ACCESSION   NM_001108986 XM_001068398 XM_345769
VERSION     NM_001108986.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1164)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1164)
  AUTHORS   Gehring NH, Lamprinaki S, Kulozik AE and Hentze MW.
  TITLE     Disassembly of exon junction complexes by PYM
  JOURNAL   Cell 137 (3), 536-548 (2009)
   PUBMED   19410547
REFERENCE   3  (bases 1 to 1164)
  AUTHORS   Diem MD, Chan CC, Younis I and Dreyfuss G.
  TITLE     PYM binds the cytoplasmic exon-junction complex and ribosomes to
            enhance translation of spliced mRNAs
  JOURNAL   Nat Struct Mol Biol 14 (12), 1173-1179 (2007)
   PUBMED   18026120
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474104.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_345769.3, XM_001068398.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1164
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..1164
                     /gene="Pym1"
                     /gene_synonym="RGD1306096; Wibg"
                     /note="PYM homolog 1, exon junction complex associated
                     factor"
                     /db_xref="GeneID:366790"
                     /db_xref="RGD:1306096"
     exon            1..105
                     /gene="Pym1"
                     /gene_synonym="RGD1306096; Wibg"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..680
                     /gene="Pym1"
                     /gene_synonym="RGD1306096; Wibg"
                     /note="within bgcn homolog"
                     /codon_start=1
                     /product="partner of Y14 and mago"
                     /protein_id="NP_001102456.1"
                     /db_xref="GeneID:366790"
                     /db_xref="RGD:1306096"
                     /translation="MKTSSTPEATGTGKYIASTQRPDGTWRKQRRVKEGYVPQEEVPV
                     YENKYVKFFKSKPELPPGLSPEATTQVTPSRPDSGEAGLSKTAKRNLKRKEKRRQQQE
                     KDAEALSRTLDKVSLGDSAQMPSAHHGPQATPPAASDAPDSAATTEKAKKIKNLRKKL
                     RQVEELQQRIQAGEISQPSREQLEKLARRRVLEEELEDLELGL"
     exon            106..199
                     /gene="Pym1"
                     /gene_synonym="RGD1306096; Wibg"
                     /inference="alignment:Splign:2.1.0"
     exon            200..1164
                     /gene="Pym1"
                     /gene_synonym="RGD1306096; Wibg"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cactactgag cagcaggcca agaagttacc tcgccgctga atccccaggg ctgctcgcca
       61 actcagtcat gaaaacctcc agcacccctg aggccacggg cacaggcaag tacattgcct
      121 caacacagag acccgacggg acatggcgca agcaacggag ggtcaaagaa ggatacgtgc
      181 cccaagagga ggtcccagtc tatgaaaaca agtatgtgaa gtttttcaag agtaaaccgg
      241 aacttccccc agggctgagc cctgaggcca ccacacaggt cacaccatcc agacctgaca
      301 gtggtgaagc aggcctctcc aagacagcca aacgcaacct gaagcggaag gagaagagga
      361 ggcagcagca ggagaaagac gcggaggcct tgagcaggac tcttgataag gtgtctctgg
      421 gagactcagc ccagatgccc agtgctcacc atggccccca agccacccct ccagctgcct
      481 ccgatgcacc tgactctgct gccaccacag agaaagccaa gaagatcaag aacctgagga
      541 agaagctgcg acaggtggag gagctgcagc agcgcatcca ggccggggag atcagccagc
      601 ctagcagaga gcagctggag aagctggcac ggcggagggt gctggaggag gagctggagg
      661 acttggagtt gggcctgtga ggcttcagga gtaggggagt ggactgcaga acaaaccatg
      721 gggtgctctg gggtccaggg agcgtgggcc gcagcagtca ggaggggcac ccccatactg
      781 gctcacttcc acctcctctg gcccgactcc gtcctccaga gccgaggctc tctctccttc
      841 atccctttcc cttctcagct cccatttttg aacttttccc ttccatccat tgttcacagt
      901 ctgagtgctg accccaggta cctctgctgc tgatctgggt gtcttgttga aaaggaaccc
      961 caggagggtg ggagtctgtc ggagatctga ggctgagggt acaaggagta cccacgtttt
     1021 agagtcttgg ttcctgttca gtgtttatga gttacttccc tgccatcccg aacctcttct
     1081 tcctcttcct cttcctcctc ctcctcctct tttttttttt tttttttttt ttaaaggcag
     1141 taagaataaa ttcaactaga cggc
//
