LOCUS       NM_001007710            2859 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus 2-phosphoxylose phosphatase 1 (Pxylp1), mRNA.
ACCESSION   NM_001007710 XM_236554
VERSION     NM_001007710.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2859)
  AUTHORS   Koike,T., Izumikawa,T., Sato,B. and Kitagawa,H.
  TITLE     Identification of phosphatase that dephosphorylates xylose in the
            glycosaminoglycan-protein linkage region of proteoglycans
  JOURNAL   J Biol Chem 289 (10), 6695-6708 (2014)
   PUBMED   24425863
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC081981.1.
            
            On Nov 29, 2004 this sequence version replaced XM_236554.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC081981.1, CV110731.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5756307, SAMEA5760383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2859
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q31"
     gene            1..2859
                     /gene="Pxylp1"
                     /gene_synonym="Acpl2"
                     /note="2-phosphoxylose phosphatase 1"
                     /db_xref="GeneID:315939"
                     /db_xref="RGD:1359617"
     exon            1..43
                     /gene="Pxylp1"
                     /gene_synonym="Acpl2"
                     /inference="alignment:Splign:2.1.0"
     exon            44..175
                     /gene="Pxylp1"
                     /gene_synonym="Acpl2"
                     /inference="alignment:Splign:2.1.0"
     CDS             97..1539
                     /gene="Pxylp1"
                     /gene_synonym="Acpl2"
                     /EC_number="3.1.3.2"
                     /note="acid phosphatase-like protein 2; acid
                     phosphatase-like 2"
                     /codon_start=1
                     /product="2-phosphoxylose phosphatase 1"
                     /protein_id="NP_001007711.1"
                     /db_xref="GeneID:315939"
                     /db_xref="RGD:1359617"
                     /translation="MLYRNRFLVLLALAGLLAFLSLSLQFFHLIPVSTTKNGGSSKSR
                     KRIMPDPVTEPPTVDPVYEALLYCNIPSVAEHSMEGHAPHHYKLVSVHVFIRHGDRYP
                     LYAIPKTKRPEIDCTLVASRKPYHPKLEAFVGHMLKGSGASFESPLGSLPLYPNHPLC
                     EMGELTQTGVVQHLQNGQLLRDIYLRKHKLLPNNWSSDQLYLETTGKSRTLQSGLALL
                     YGFLPEFDWKKVYFKHQPSALFCSGSCYCPLRNQYLEKEQRRQYLLRLKNSDLERTYG
                     EMAKIVDIPTKQLRAANPIDSMLCHFCHNVSFPCSRSGCLGMEHFKVIKTHQIEDERE
                     RHEKLLYFGYSLLGAHPILNQTVNRMQRAALGWRDELFTLYSAHDVTLSPILSALGLL
                     EARFPRFAARLVFELWQDRQKPSEHSVRILYNGADVTFHTSFCHDFHKHSPKPMCPLE
                     NLVRFVKRDMFVALDGSSTNYYDACHGEGA"
     exon            176..334
                     /gene="Pxylp1"
                     /gene_synonym="Acpl2"
                     /inference="alignment:Splign:2.1.0"
     exon            335..461
                     /gene="Pxylp1"
                     /gene_synonym="Acpl2"
                     /inference="alignment:Splign:2.1.0"
     exon            462..601
                     /gene="Pxylp1"
                     /gene_synonym="Acpl2"
                     /inference="alignment:Splign:2.1.0"
     exon            602..2829
                     /gene="Pxylp1"
                     /gene_synonym="Acpl2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggagaaccc tacgcagagc aacggaggcc cggaccgtag gcggacaggc tccggattag
       61 aggtgaaacc atgaagagaa cgtagaacac gcaataatgc tttaccgcaa tcgcttcttg
      121 gtgctgctgg ccctggctgg gctgctggct ttcctgagcc tcagcctgca gttctttcat
      181 ctgatcccag tgtccaccac aaagaatggc ggaagcagca agagccggaa gaggatcatg
      241 cctgacccag tgacagagcc ccccacggta gacccggtct atgaagctct tctgtactgc
      301 aacattccga gtgtagccga gcacagcatg gaaggtcatg ccccgcatca ttataagctg
      361 gtctccgttc acgtgttcat ccgccatggg gacaggtacc cactgtatgc cattcccaaa
      421 acgaagcggc cagaaatcga ctgcactcta gtggccagca ggaagccata tcaccctaaa
      481 ctggaagctt tcgttggtca catgctgaaa ggttccggag cctcttttga aagcccctta
      541 ggttccctgc ctctctatcc taaccatcct ctgtgtgaga tgggggagct cacgcagaca
      601 ggagtcgtgc agcatctgca gaatggccag ctgctgaggg acatctatct gaggaaacac
      661 aagcttctgc cgaacaactg gtcctcagac cagctttacc tagagaccac ggggaagagc
      721 cgcaccctgc agagtgggct agccttgctc tatggcttcc tcccagagtt cgactggaag
      781 aaggtctact tcaagcacca accaagtgct ctgttctgct ctggaagctg ctactgcccg
      841 ctaagaaacc agtatctgga gaaggaacag cgacgccagt acctgctccg tctgaagaac
      901 agcgacctag agaggaccta cggggagatg gccaagatcg tggacatccc caccaagcag
      961 ctccgggcgg ccaaccccat cgactccatg ctctgccact tctgccacaa tgtcagcttc
     1021 ccctgcagca gaagtggctg ccttggcatg gagcacttta aggtgatcaa gacgcaccag
     1081 atagaggatg agcgagagag gcacgagaag ctcctgtact ttgggtactc cctcctcggg
     1141 gcccacccca tcctgaatca gacggttaac cggatgcagc gcgctgcctt gggctggagg
     1201 gacgagctgt tcaccctcta ctctgctcac gacgtcaccc tgtcacccat cctcagtgcc
     1261 ttgggtcttt tggaagccag gttcccaagg tttgctgcca ggctggtttt tgagctctgg
     1321 caagaccgtc aaaagcccag cgagcattcc gtccggattc tttataatgg ggctgacgtc
     1381 accttccaca cctccttctg ccatgacttc cacaagcact ctcccaagcc catgtgtcct
     1441 ctggagaact tggtccgctt tgtcaaaagg gatatgtttg tagccctgga tggcagcagt
     1501 actaactatt acgatgcatg ccacggggaa ggggcctaag aggtactcag cacagccgcg
     1561 tctgcttgct ggttctgtct gttgctaaga tgtcaaggta tggagttcta acggtgcaga
     1621 ttaggtgggg tgatcatgct catgggcgag acaaacggga acacataccg tatactactt
     1681 ggtacaaaat agccggttca cagaggaagg aaggcacgtt ctcacagccg tgcgcagctt
     1741 agaatgccag cattcggctc agcactcaca gttgccaagc caaccttata taacttttgg
     1801 cctgccatga accagcaaac ctctgccaaa gtcctcttaa tctcggacat tcaccttcac
     1861 cttgtgtgga aattttccca gaggaacgag ttcaaagtgt gcccggcagc ctttgtctgg
     1921 agggaccaca agatcactgt cttagacttg gtagccctaa aggtcacgga gaatctctcc
     1981 ctgtcagatc ttctcggctg tgcgctggtt ggccatatgt aagtgggcag aataggcggc
     2041 agccagctct ggccgctggc tgtttgctga ctcaccttga agagcagcct gtgccgttgg
     2101 actcccgctc cttgggagcc agcggggccg cagtgcggca ggtcctttgg gagcgtctgc
     2161 tagaagcaca gggttgggtc aatggccctg ggtgagaaag cgcgtaggaa taactattac
     2221 agcacttgat gctcatgagg atcatggcac aaaatagctt tacgtgtgtc ttaggtgttt
     2281 gtctgctgta gtctactggc tgcaaactgc tgggcttttg tatcccattt agtattttta
     2341 tagtctagga aaatattttc tgagaccagt tttagatgtg ttcagattcc tatagaaata
     2401 ttcaatttac tgcacctgct tggtggttgg aaggaggcca aaagctcaat ttggacactc
     2461 tctctttttt ccccctccga aaataaataa ctaatgactc attccttttg acaagctgta
     2521 gaattaggtc catttttaaa ccattttcgt ctatttcaaa tgccaaattc caatcgattt
     2581 ttaaagaggt ttctagaaaa aaattgttat tccatagtta aataatcttt ctaaaatgtt
     2641 ttatatatca ggcgtgatca caactgactg cgtggttcct cggtcaatgg tgctagctcg
     2701 ttctgaagac agggccatgt gggcggcatt ggttctgcag catcggcacg ccagccttcc
     2761 tcttcctctg tgtctggtgt tgcattggaa cacgttttgt ttttagaaat aaaaaatttt
     2821 gaattcttaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//
