LOCUS       XM_006253841            2352 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PX domain containing 1 (Pxdc1),
            transcript variant X1, mRNA.
ACCESSION   XM_006253841
VERSION     XM_006253841.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006253841.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006253841.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2352
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2352
                     /gene="Pxdc1"
                     /gene_synonym="RGD1311307"
                     /note="PX domain containing 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 29 ESTs, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     79 samples with support for all annotated introns"
                     /db_xref="GeneID:361238"
                     /db_xref="RGD:1311307"
     CDS             662..1417
                     /gene="Pxdc1"
                     /gene_synonym="RGD1311307"
                     /codon_start=1
                     /product="PX domain-containing protein 1 isoform X1"
                     /protein_id="XP_006253903.1"
                     /db_xref="GeneID:361238"
                     /db_xref="RGD:1311307"
                     /translation="MASAVFEGTSLVNMFVRGCWVNGIRRLIVSRRGDEEEFFEIRTE
                     WSDRSVLYLHRSFADLGRLCKRLRDAFPEDRSELARAPLRQGLLAIKGAHDIETRLNE
                     VEKLLETVISMPCKYSRSEVVLTFFERSPLDQVLKNDNVHKIQPSFQSPVKISEAKEG
                     IGSLRTGVVDGCEPPEIMRSNGFCLANTETIVIDHSIPNGKDQLLDADSTEHLFENGG
                     EFTSELEDGDDPAAYVTNLSYYHLVPFETDILD"
ORIGIN      
        1 ggccgggcgg gtcgagggcg gcgcggggac cagcaccagt cccactgtcc ggatccccgt
       61 gcggtatgag cccgcgtccc cgccccgtgc ggcgccgcct cgggactctg gacttcagcg
      121 acgtgtcaat cccacccccg cgagtgccgg gcagagtgct caactccagg cagaatcccg
      181 aggattcaga gtaggaacga gcagaaagtc gccctgcgct ccgggagagc gcaggacccg
      241 ccccgcttag cagcgggcag actggggagg cggcgccttg cgtggagcct gggccgggac
      301 cgcccgcggc gggtcagcgg gaggcaggag ggaggtgctg cagcccggac tcgacgtcga
      361 cgcccgcacc gcccgcgatg ggaagtgcct tataaagccg cagccggagc agtcagacag
      421 actcttggcg acgccgccca gagcgcgggc cgcacgtagc cgccccagag tgcgcgaaga
      481 gctagagcac atccgcgggg catcaacttc tacccaccgg gactcttaac ggccgttgcg
      541 aggatcgacc gcgtcccaca gagaattcct gatcgccctt gcccagaccc actctgccca
      601 ggcggacccc agtcgggggc cgagggcgcc cccggcggca ggggcatgcg cctcccgcgg
      661 catggcctcg gcggtgtttg agggcacgtc gctcgtgaac atgttcgtgc gcggctgctg
      721 ggtgaacggg atccgcaggc tcatcgtcag ccggcgtggc gatgaggagg agttcttcga
      781 gatccgcacc gagtggtcgg accgcagtgt gctctacctg caccgcagct tcgcggacct
      841 gggccgcctg tgcaagcgcc tccgtgacgc cttcccggag gaccggtctg aactggcgcg
      901 tgcgccgctg cggcaagggc tgcttgccat caagggtgca catgacatag agaccaggct
      961 gaacgaagtc gagaagctgc tggagacggt cattagcatg ccgtgcaagt attctaggtc
     1021 tgaggttgtc ctcaccttct ttgaaagatc gcctctggat caggtgttaa aaaatgataa
     1081 cgtccataaa atccaaccca gctttcaaag tcctgtgaaa atatcagagg ctaaagaagg
     1141 cattggatcc ctcagaactg gagttgtaga cggttgtgag ccgccagaaa tcatgaggtc
     1201 caacggattt tgtttggcaa acacagaaac aatagtcatt gaccacagca tacccaatgg
     1261 gaaggaccag ctcctggatg cggattccac agagcatttg tttgagaatg gtggtgagtt
     1321 cacctcagag ttggaagatg gtgatgaccc agcagcttac gtcaccaact tgtcctatta
     1381 ccatctggtt ccatttgaga cggacatttt ggactgagcc tctccacagg gccttgtctg
     1441 cctctattct tgactgcatg tcctcttgct atctactgtg tgtccccaag ggccaacgct
     1501 gctgttcacc tgggcctctg agggccctga agttcaacag gcctgggttt ttagaaagcg
     1561 gaggaggcac aagggatctt gatgaccaca ggcagctctg agggccttct ccctgcactc
     1621 agcctgcctt ttatgggaca cactattcct gcagaccatg cttcctcttg tctctgctgg
     1681 cttggggagc attcctcttg gtcacatggc cctgactccc cacttttctc ttgtgtatca
     1741 aaggcactaa gcttttcaag aggatttttg gtaagttacc aagttccgga cctcatgggc
     1801 aggggatatt aagtaactca ggactttcct gagaagaagg acgtgtgtct tctctttttc
     1861 ttctttacat ctgctccctg gaaactgggt ttggggtcag ttggaaggag agtttacaca
     1921 acatcaagct tggagaagat tgctggcttt agggcgggga aaacattcac agtccggtgc
     1981 atatgaacca ggtgtaaagt tttcttccag aaaagagagc tccctcctct ctgccggcac
     2041 ctgtcagctc ttctgccagg cagtgatgtg gtcaccactg cttagggtgc tcaaaacccc
     2101 tcctctggta aactccatgg cataagtgcc atggtgaacc agaaaggaag ggctggggag
     2161 taagggaagc ttacagcttg gaccgcagaa ggtctgggtc ctgcaagctc atgtcttcac
     2221 tgtgtctact aacgaccagc acttgctaat gtaaataata gtaaattatt gaaaattcta
     2281 attcttttac acagtctgtt tttaatctat tttaatgaaa taaaatctat tgttctactt
     2341 tgatctattg ag
//
