LOCUS       NM_001168653            3176 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus PWP2, small subunit processome component (Pwp2),
            mRNA.
ACCESSION   NM_001168653 XM_001074000 XM_001079336
VERSION     NM_001168653.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3176)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 3176)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On or before Dec 13, 2009 this sequence version replaced
            XM_001079336.1, XM_001074000.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.153548.1,
                                           SRR26643286.46670.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-79                JAXUCZ010000020.1  10498998-10499076
            80-192              JAXUCZ010000020.1  10499898-10500010
            193-287             JAXUCZ010000020.1  10501070-10501164
            288-387             JAXUCZ010000020.1  10501342-10501441
            388-531             JAXUCZ010000020.1  10501572-10501715
            532-667             JAXUCZ010000020.1  10502424-10502559
            668-903             JAXUCZ010000020.1  10502791-10503026
            904-1047            JAXUCZ010000020.1  10503838-10503981
            1048-1118           JAXUCZ010000020.1  10504318-10504388
            1119-1255           JAXUCZ010000020.1  10505090-10505226
            1256-1404           JAXUCZ010000020.1  10505614-10505762
            1405-1552           JAXUCZ010000020.1  10505856-10506003
            1553-1703           JAXUCZ010000020.1  10506294-10506444
            1704-1884           JAXUCZ010000020.1  10507035-10507215
            1885-2032           JAXUCZ010000020.1  10507608-10507755
            2033-2141           JAXUCZ010000020.1  10508576-10508684
            2142-2207           JAXUCZ010000020.1  10509226-10509291
            2208-2426           JAXUCZ010000020.1  10510225-10510443
            2427-2577           JAXUCZ010000020.1  10510554-10510704
            2578-2652           JAXUCZ010000020.1  10510821-10510895
            2653-3176           JAXUCZ010000020.1  10512108-10512631
FEATURES             Location/Qualifiers
     source          1..3176
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..3176
                     /gene="Pwp2"
                     /note="PWP2, small subunit processome component"
                     /db_xref="GeneID:690297"
                     /db_xref="RGD:1582817"
     exon            1..79
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     CDS             62..2824
                     /gene="Pwp2"
                     /note="PWP2 periodic tryptophan protein homolog; PWP2,
                     UTPB SSU processome subunit"
                     /codon_start=1
                     /product="periodic tryptophan protein 2 homolog"
                     /protein_id="NP_001162124.1"
                     /db_xref="GeneID:690297"
                     /db_xref="RGD:1582817"
                     /translation="MKFAYRFSNLLGTVYRCGNLNFSRDGNSVISPVGNRVTVFDLKN
                     NRSDTLPLATKYNIKCVGLSPDGRLAIIVDEGGAALLVSLVCRSVLHHFHFKGSVHSV
                     SFSPDGRKFVITKGNIAQMYHAPGKKREFNAFVLDKTYFGPYDETTCIDWTDDSKCFV
                     VGSKDMSTWVFGAERWDNLIYYALSGHKDAIVACFFESNSLDLYSLSQDGALCVWQCD
                     TPPEGLRLKAPRGWKADILQREKEEEEEEDEEGEGNRETTIRGKAVPAEQERVGKVKY
                     SRLAKYFLNKEGDFNNLTAAAYHKKTHLLVTGFASGIFHLHELPEFNLIHSLSISDQR
                     VASVAINSSGDWIAFGCSGLGQLLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVT
                     GGDDGKVKVWNTLSGFCFVTLTEHSSGVTGVTFTATGHVIVTSSLDGTVRAYDLHRYR
                     NFRTFTSPRPTQFSCVAVDSSGEIVSAGAQDSFEIFVWSMQTGRLLDVLSGHEGPISG
                     LCFNPMKSILASASWDKTVRLWDMFDSWRTKETLSLTSDVLAVTYRPDGAELAVATLN
                     SQITFWDPENAVQVGSIEGRHDLKTGRKELDKITAKHSAKGKAFTTVCYSADGQNILA
                     GGMSKFVCLYHVREQILVKRFELSCNFSLDAMEEFLNRRKMTEFGNLALIDQDAGEEN
                     GVAIPLPGVRKGDMSSRHFKPEIRVTSLRFSPTGRCWAATSTEGLLIFSLDAQMLFDP
                     FELDTSVTPGRIREALRQREFTRAILMAFRLNEKKLAQEALEAVPQNEIEVVSASLPE
                     LYVVKVLEFLAASFEESRHLEFYLIWTQKLLMSHGQRLKSRAGQLLPVVQFLQKGLQR
                     HLDDISKLCDWNRYNIQYALAVSKQRGMKRTLEPVDTEEDTDASDEDSLHLLRAAEEE
                     EEGMLV"
     exon            80..192
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            193..287
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            288..387
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            388..531
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            532..667
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            668..903
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            904..1047
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1048..1118
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1119..1255
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1256..1404
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1405..1552
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1553..1703
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1704..1884
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            1885..2032
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            2033..2141
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            2142..2207
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            2208..2426
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            2427..2577
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            2578..2652
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
     exon            2653..3176
                     /gene="Pwp2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccggagata gttcgtattc cggaagtggc tggagcaggg ttccgcacgt gtggctccgg
       61 gatgaaattc gcttatcggt tctccaattt gctgggtaca gtttatcggt gtggaaacct
      121 aaatttctca cgtgatggaa attctgttat cagccctgtg ggaaacagag tcactgtgtt
      181 tgaccttaag aacaacagat cagacacatt gcctctggcc accaagtaca acatcaagtg
      241 cgtggggctg tccccagatg gtcgcctggc aatcatcgtc gacgaaggag gcgccgctct
      301 gctagttagc ttggtgtgca ggtccgtgct ccaccacttc cacttcaagg gttccgtgca
      361 cagtgtctcc ttctcccccg atggcagaaa atttgtcatc acgaagggca acattgccca
      421 gatgtaccat gcccccggaa agaagcgaga attcaatgcc tttgttctgg acaaaaccta
      481 ttttgggccc tacgatgaga ccacgtgcat tgactggaca gatgactcca agtgctttgt
      541 ggtcggaagc aaagacatgt ccacctgggt gtttggagct gagcgctggg acaaccttat
      601 ctactatgca ctgagtggac acaaagacgc cattgtggcc tgcttctttg agtccaacag
      661 cctagatctg tactcgctca gccaagatgg agccctgtgt gtgtggcagt gtgacacacc
      721 ccctgagggc ctgcggctta aggcgcctag gggctggaag gcagacatac ttcagaggga
      781 gaaggaagaa gaggaggagg aggatgaaga aggggaaggg aatcgagaaa ccaccatccg
      841 agggaaggcc gtgccagccg agcaggagag ggtcgggaaa gtgaaatact cacggctggc
      901 caagtacttc ttgaacaaag aaggagactt taacaacctg acagccgccg cttatcataa
      961 gaagacccat ctcttggtca cgggttttgc ttctggaatc ttccatctgc atgagctccc
     1021 agagttcaac ctcatccact ccctgagcat ctctgatcag agggtcgctt cggttgcgat
     1081 caacagctct ggggactgga tcgcctttgg ctgctcaggc ttgggccagc tgctggtgtg
     1141 ggagtggcag agtgaatcct acgtgctcaa acaacaaggc cacttcaaca gcatggtggc
     1201 cctggcctac tcccctgacg ggcagtacat tgtcaccggt ggggacgatg gcaaggtcaa
     1261 ggtgtggaac accctcagtg gcttctgctt tgtcactctc acggaacact ccagtggggt
     1321 cactggagtg acattcactg ccacaggcca tgtcattgtc acctcctcct tggatggcac
     1381 cgtgagagcc tacgatcttc acaggtaccg gaatttccgc accttcacgt ctccacggcc
     1441 cacacagttc tcttgtgtgg ccgtcgactc aagcggggaa atcgtctctg caggggcgca
     1501 ggactccttt gagatctttg tgtggtccat gcagacaggc aggctccttg atgttctctc
     1561 tggccatgag gggcccatca gtggtctttg ctttaacccc atgaagtcca tcctggctag
     1621 tgcctcttgg gacaagacag tgcgtctgtg ggacatgttc gacagttgga gaaccaagga
     1681 gaccttgagt ctgacctctg acgtcctagc tgtgacttac cggcctgatg gtgcagagct
     1741 ggctgtggct actctgaatt cacagatcac tttctgggat ccggagaatg ctgtacaggt
     1801 gggctccatc gagggcaggc atgacctgaa gacgggcagg aaagagctgg acaagatcac
     1861 agctaaacac tcggccaagg gcaaggcctt caccaccgtg tgttactctg cggacggcca
     1921 gaacatcctg gcgggaggca tgtccaagtt cgtctgcctt taccacgtcc gggaacaaat
     1981 cctggtgaag aggtttgagc tctcctgcaa cttctctctg gatgccatgg aagaattcct
     2041 gaaccggaga aagatgacgg agtttggcaa cctggcactc atcgaccaag atgccgggga
     2101 agagaacggg gtagcgattc cgttgccggg tgtaaggaag ggtgacatga gctccagaca
     2161 cttcaaacct gaaatcaggg tgacttctct acgcttctct cccactgggc gctgctgggc
     2221 agccaccagc acagaggggc tcctcatctt ctccctggac gcccagatgc tctttgaccc
     2281 attcgagctg gacaccagtg tgacccctgg acggatccgg gaagccctcc gacagaggga
     2341 gtttacccgg gccatcctta tggccttccg cctcaatgag aaaaaactgg cccaggaggc
     2401 cctggaggct gtaccacaga atgagattga ggtggtcagc gcttctctgc ctgagctgta
     2461 tgtggtgaaa gtgctagagt tcttagccgc ctcctttgaa gagtctcggc acctggaatt
     2521 ctaccttata tggacacaga agttactgat gtcacatgga cagcgcctga agtccagggc
     2581 gggacagttg ctgcctgtgg tccagttcct tcagaagggc ctccagcggc atctagatga
     2641 catttccaag ctctgtgact ggaaccgcta taacatccag tacgcgctgg cggtttccaa
     2701 gcagaggggt atgaaacgca ccctcgaacc tgtagacaca gaggaggaca cagatgcatc
     2761 tgatgaggac agtctgcacc tactcagagc tgcagaggag gaggaagagg ggatgctggt
     2821 gtagaaccgc gtacgtcata gcctcattgg ctgattggag atggaaccac ggtgctcctg
     2881 ggcccaggaa gtgggagatg ccagaggtcc gaagaccctc cagccaggcc tcttcctgtg
     2941 agactgctca tgctgccatg agcaggacac aatgggcaca cacgctgtgg gcccagaacg
     3001 ctggcgtcat ggatgacgac cctgcacaga cttcctgagg agtggacagg tttagaagtg
     3061 tgggcttgca aaattcctgt cagagttatt tatattttta tatgacattc tacgatgaac
     3121 ttagggttgg aaagtgggct tcttaaaaaa tatgagggct tcgcttttca actttg
//
