LOCUS       NM_001395608            1243 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus pseudouridine synthase like 1 (Pusl1), transcript
            variant 1, mRNA.
ACCESSION   NM_001395608
VERSION     NM_001395608.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1243)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.1993244.1,
                                           SRR26360186.256979.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840107,
                                           SAMN12840110 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-145               JAXUCZ010000005.1  171782735-171782879 c
            146-203             JAXUCZ010000005.1  171782448-171782505 c
            204-391             JAXUCZ010000005.1  171782121-171782308 c
            392-541             JAXUCZ010000005.1  171781822-171781971 c
            542-712             JAXUCZ010000005.1  171781571-171781741 c
            713-767             JAXUCZ010000005.1  171780703-171780757 c
            768-930             JAXUCZ010000005.1  171780469-171780631 c
            931-1243            JAXUCZ010000005.1  171779875-171780187 c
FEATURES             Location/Qualifiers
     source          1..1243
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1243
                     /gene="Pusl1"
                     /note="pseudouridine synthase like 1"
                     /db_xref="GeneID:362681"
                     /db_xref="RGD:1559560"
     exon            1..145
                     /gene="Pusl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..944
                     /gene="Pusl1"
                     /note="isoform 1 is encoded by transcript variant 1; tRNA
                     pseudouridine synthase-like 1; pseudouridylate
                     synthase-like 1"
                     /codon_start=1
                     /product="tRNA pseudouridine synthase-like 1 isoform 1"
                     /protein_id="NP_001382537.1"
                     /db_xref="GeneID:362681"
                     /db_xref="RGD:1559560"
                     /translation="MGSCGAVGSVRARYLVFFQYLGTDFNGVAAVRGNHRAVGVQNFL
                     EEAAKRLNSVEPVRFTISSRTDAGVHALSNAAHLDIQRRPGRPPFSPEIVTKALNTHL
                     KHPAIRVLKAFRVPNDFHARHAATSRTYLYRLATGCSGPNQLPVFEQNVCWSLQTEYL
                     DIAAMQEAAQHLLGTHDFSAFQSAGSPVPHAVRTLRRVSVSPGPASLFVLPQESRRLQ
                     FWTLEFESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPAHG
                     LFLKSVLYDNFGPTS"
     exon            146..203
                     /gene="Pusl1"
                     /inference="alignment:Splign:2.1.0"
     exon            204..391
                     /gene="Pusl1"
                     /inference="alignment:Splign:2.1.0"
     exon            392..541
                     /gene="Pusl1"
                     /inference="alignment:Splign:2.1.0"
     exon            542..712
                     /gene="Pusl1"
                     /inference="alignment:Splign:2.1.0"
     exon            713..767
                     /gene="Pusl1"
                     /inference="alignment:Splign:2.1.0"
     exon            768..930
                     /gene="Pusl1"
                     /inference="alignment:Splign:2.1.0"
     exon            931..1243
                     /gene="Pusl1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgccgtcatt gctgggcagg gtcgaccgcc ggccacgtgc aaccgccccg cccgccagcc
       61 gctcaaatat gggttcctgc ggggcggtgg gctccgtgcg tgcgcgctac cttgtgttct
      121 tccagtactt gggcacagac ttcaatggag ttgcggccgt gagaggtaac catcgcgctg
      181 ttggggtaca gaactttctg gaggaggctg ccaagcggct gaactcggtc gagccggtca
      241 ggttcactat ctccagccgc actgatgccg gagtgcatgc cctgagcaac gcggcgcacc
      301 tggacatcca gcgccgccca ggccggccgc ctttttcccc agagatcgta accaaggccc
      361 tcaacaccca cctgaagcac ccagccattc gtgtactgaa ggccttccga gtgcccaatg
      421 acttccatgc tcgccacgca gccacctcca gaacctacct ataccgtctg gccacaggct
      481 gctccgggcc taatcaactg cctgtgtttg aacaaaatgt atgctggtct ctgcagacag
      541 agtacctgga tatagctgcc atgcaggagg ctgcccagca tctccttggg acacatgatt
      601 ttagtgcctt ccagtctgct ggcagcccag tcccacatgc tgtacgcaca ctgcgaagag
      661 tctctgtgtc tcctggtcca gccagcttat ttgtcctccc tcaggagagc aggaggctgc
      721 agttctggac cttggagttt gaaagccagt ctttcctcta tcgacaggtg cggaggatga
      781 cagctgtgct ggtggctgtg gggctaggga ttctggcacc tacacaagtg aaagtgattc
      841 tggagagtca agatcccttg ggcaagtatc aggctcgagt tgccccagcc catggcctgt
      901 tcttgaagtc agtgctgtat gacaactttg gtcctacatc ctgaacccta tggtgtggaa
      961 atcagctgac ggcacacagt ggagatgaag ccacacggca gacaaggctg tcaaccttgt
     1021 ccaacattac tgtgcttggc agagattaat ctacagctac gtagggctct ggcggtcctg
     1081 cctgccttcc agcagctccc acctccccag gctttctact ctttgtcact aaagagacca
     1141 gatagggtcc cgggcagtca aaagctttaa gaacccacgt tttctgggag ccctgtttcc
     1201 ctgggggcaa gggaatagga ataaaaggca cagagaacaa aaa
//
