LOCUS       XM_002729847            2929 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus pseudouridine synthase 7 like (Pus7l),
            transcript variant X2, mRNA.
ACCESSION   XM_002729847
VERSION     XM_002729847.6
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086025) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jul 30, 2024 this sequence was replaced by
            NM_001432479.1.
            
            On Jan 21, 2021 this sequence version replaced XM_002729847.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2929
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2929
                     /gene="Pus7l"
                     /note="pseudouridine synthase 7 like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 7 ESTs, 35 long SRA reads, 3 Proteins"
                     /db_xref="GeneID:315264"
                     /db_xref="RGD:1304692"
     CDS             167..2296
                     /gene="Pus7l"
                     /codon_start=1
                     /product="pseudouridylate synthase PUS7L"
                     /protein_id="XP_002729893.2"
                     /db_xref="GeneID:315264"
                     /db_xref="RGD:1304692"
                     /translation="MEEDADDGIRSGSLCFINDHVGFQGSIKTSPGDFIVTEIDEQGR
                     LVSKATDEPLREFSKTQPEPSNCQVKKPKLNTQTVDLDCENNKEAAKSPGHSPAGRSE
                     GDRVQPAGSDRDSEKENSVRCATSKCEVESVGLLSSLLDESTHTSLDHFARDVKEMWN
                     SSTELTEPSPELSLGRILDKRQRAALHSAVRQTFPFLITVGNNSEVVVKPSLEYKELS
                     HLVSEEEALGFFRYLDAKKENSKFTFQPDPNKDHRKAVHHFLNKKFGNLVETKSFPGQ
                     SHSAGNPNTAITVRFREKAHGKRAHPEGKRRRAVYTAFTLQKENLEMFEAIGFLAIQL
                     GVIPSDFSYAGLKDKKAITYQSMVVRKVTPERLKTIEEEIKKKRMNVFNVRSVDDSLR
                     LGQLKGNHFEIIIRNLRNQPNDSANLRERVLEAIENVKNKGFVNYYGPQRFGKGKKIQ
                     TDRIGLALLKNEMVKAIKLFLTPEDADDPVNKAKKYFLQTEDAKGTLSLMPEFRVRER
                     ALLESLHRFGVTEEGCVQAWFSFPHSMRIFYIHAYSSRIWNEAASYRLAAYGPKVVKG
                     DLVCLDEDADEHLPSSKVHLVTEEEESADTYALHQVVLPVLGYNVQYPENKVGRWYQG
                     VLGRDGLQACRFRVPALKLNVPGCYRHIVKHPHNVSHRLVHPDPAELRAEGPHADDTA
                     SSLALSFDLDASCYATVCLREMMKDDI"
     polyA_site      2929
                     /gene="Pus7l"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gaaggccacg cccttcctcc cgagctccac ccagggagga gctacaccaa ccggagcctg
       61 tccctttaaa cgcccctgta agaggctagg cagcagaaag gcttctgggc atgcgcactg
      121 tgtcgcaggg aggccacttt ctctcggaag cgaggcaccg ttaataatgg aagaggacgc
      181 ggatgacgga atcaggtctg gctccttgtg tttcatcaac gaccacgtcg gatttcaggg
      241 cagtataaaa acctcacccg gtgacttcat cgttactgag attgacgaac agggacggtt
      301 agtcagcaag gccaccgacg aaccccttcg tgaatttagt aaaacacagc ctgaaccgag
      361 taattgccaa gtcaagaagc caaagctaaa tactcagact gtagacttag actgtgaaaa
      421 taacaaggaa gctgctaagt cgcccgggca ctcacccgcc gggcgctcgg agggtgaccg
      481 ggtccagcct gcgggctcgg atcgtgactc agaaaaagaa aacagcgtcc gctgtgcgac
      541 ttctaaatgt gaagtagaaa gcgttggttt attaagttca cttttagatg aaagcactca
      601 cacatcgctg gatcactttg cccgtgacgt caaagagatg tggaattcaa gcactgaact
      661 aaccgaaccg tctcctgaat tgtccctagg caggatcctt gacaaacgcc aaagggctgc
      721 cctgcacagt gctgtgaggc agacatttcc cttcttgata accgtaggaa acaacagcga
      781 agtggttgta aaaccgagtc ttgagtataa ggaactcagc cacttggtgt ctgaagagga
      841 agcacttggc tttttcagat atttggacgc aaagaaagaa aactccaagt ttacctttca
      901 accggatcca aacaaagatc acaggaaggc cgtgcaccat tttctcaaca agaagttcgg
      961 aaacctggtg gaaaccaagt cttttcctgg gcagagccac agtgctggga acccaaacac
     1021 agccataacc gtgagattcc gggaaaaagc acacggaaag agagctcacc cggaaggcaa
     1081 gagaagaaga gcagtgtata cagctttcac cctacaaaag gaaaatctgg agatgttcga
     1141 agcaattggt tttctggcca tccaacttgg cgttattcct tcggatttta gttacgcggg
     1201 ccttaaagac aagaaagcaa tcacctatca atcaatggta gttagaaaag tgactcctga
     1261 gagattgaaa actatcgaag aagaaattaa gaagaagaga atgaatgtgt ttaatgttcg
     1321 gtctgtagac gattctctca gacttggtca gctcaaagga aaccactttg aaattatcat
     1381 cagaaaccta agaaatcaac caaatgattc tgccaacctg agagagagag ttttggaggc
     1441 aatagaaaat gttaagaata aaggttttgt gaattactac gggccacaga gatttgggaa
     1501 aggaaagaaa atccaaacag accgaattgg attggctctc ctgaagaatg aaatggtaaa
     1561 ggccataaaa ttatttctca cgccagaaga cgcggatgat cctgtcaata aagcaaagaa
     1621 atacttcctc caaactgagg acgctaaagg cacgctttca ctgatgcccg agttccgggt
     1681 tcgagagcgc gcgctgctgg agtccttgca tcgctttggc gtgacggagg aaggctgcgt
     1741 ccaggcctgg ttctccttcc cccattccat gcgtatattc tacatccacg catacagtag
     1801 caggatttgg aacgaggcag cgtcgtacag actggcagcc tacggaccca aggtggtgaa
     1861 gggggacctg gtctgcttgg atgaagatgc ggacgagcat cttccaagca gtaaagttca
     1921 cctggtgacc gaggaagagg agtcagctga cacatatgca ctgcaccagg tcgttctgcc
     1981 cgtgcttgga tacaacgttc agtacccgga gaacaaagta gggcggtggt accaaggggt
     2041 cctcggcagg gacggactgc aggcctgtag gttcagggtg cccgccctga agctgaatgt
     2101 acccggctgc tacaggcaca tcgtgaaaca cccccacaat gtatcacacc gactggtcca
     2161 tcccgacccc gccgagcttc gagcggaagg tccccacgcc gacgacacag cctcatcgct
     2221 ggccttatcc tttgacctcg acgcttcgtg ctacgccacc gtttgtctga gggaaatgat
     2281 gaaggacgac atttaaaccc acaccctaag gtagctgcga gcccgccatt aggtagctgt
     2341 ggttcctagg gctcgctcga ccttgagctt cgcggttgct gctcctcggt tttcacagta
     2401 tcctgagtgg cgtattaacg taagcatcgg tgtctacgtt taaagctcca ggaccgtggt
     2461 ctttaaggac atgtcatgct ttagagaatt ttgctccagt cacgaaagct ccagatcttt
     2521 ggagcactgc tctgagcccc ggggctgctg cacatcacac ttaagagaga ggcagagaga
     2581 ggacacggtc cacactgctt aaaggtaaag ccaggtgaca gtgaaaccct ggtgaccgga
     2641 ccagagaggc ttttctccat cactgcgcgc gaggtggctg gtttaacacc gtgcaagggc
     2701 gatatctgtt ctcataatct gtttatgaga tcatttttga ggaagactga aaattttaat
     2761 taaaaatttt tatactagtt tttttatacc tgttccccta actctttgtt atgttttctg
     2821 tcatctgaaa ctcagatttt agactcctgt ttgtacccac attctgtttc aatgtcactg
     2881 gacatggtgt tgattctttt ttaaaataaa gatagtcttg atgacctga
//
