LOCUS       NM_001025036            2169 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus pumilio RNA-binding family member 3 (Pum3), mRNA.
ACCESSION   NM_001025036 XM_574647
VERSION     NM_001025036.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2169)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 2169)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 2169)
  AUTHORS   Chang,H.Y., Fan,C.C., Chu,P.C., Hong,B.E., Lee,H.J. and Chang,M.S.
  TITLE     hPuf-A/KIAA0020 modulates PARP-1 cleavage upon genotoxic stress
  JOURNAL   Cancer Res 71 (3), 1126-1134 (2011)
   PUBMED   21266351
REFERENCE   4  (bases 1 to 2169)
  AUTHORS   Ohta,S., Bukowski-Wills,J.C., Sanchez-Pulido,L., Alves Fde,L.,
            Wood,L., Chen,Z.A., Platani,M., Fischer,L., Hudson,D.F.,
            Ponting,C.P., Fukagawa,T., Earnshaw,W.C. and Rappsilber,J.
  TITLE     The protein composition of mitotic chromosomes determined using
            multiclassifier combinatorial proteomics
  JOURNAL   Cell 142 (5), 810-821 (2010)
   PUBMED   20813266
REFERENCE   5  (bases 1 to 2169)
  AUTHORS   Hoja,M.R., Wahlestedt,C. and Hoog,C.
  TITLE     A visual intracellular classification strategy for uncharacterized
            human proteins
  JOURNAL   Exp Cell Res 259 (1), 239-246 (2000)
   PUBMED   10942595
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC092579.1.
            
            On Jun 25, 2005 this sequence version replaced XM_574647.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC092579.1, BC098744.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2169
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q52"
     gene            1..2169
                     /gene="Pum3"
                     /note="pumilio RNA-binding family member 3"
                     /db_xref="GeneID:499339"
                     /db_xref="RGD:1564753"
     exon            1..34
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
     exon            35..126
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..1988
                     /gene="Pum3"
                     /codon_start=1
                     /product="pumilio homolog 3"
                     /protein_id="NP_001020207.1"
                     /db_xref="GeneID:499339"
                     /db_xref="RGD:1564753"
                     /translation="MEVKGKKKITGKSPQTSQGKNKFHKNSESSSAKAFPRKAAKEGG
                     PKVTSKNFEKGATKPGKKRVKQFKNKPQGGKGPKDKFQKANKFNKKRKFQPDGKSDES
                     AAKKPKWDDFKKKKKELKQNRQLSDKTNYDVVVRAKHIWESLRRKDCDKEKRVKLMSD
                     LQKLIQGKIKTIAFAHDSTRVIQCLIQYGSEEQRKWAFEELQGDLVELSKAKYSRNIV
                     KKFLMYGSKPQIAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYG
                     NTFQLYKSADHPTLEKVLEVQPGKLELILDEMKQILTPMAQKEAVIKHSLVHKVFLDF
                     FTYAPPKLRSELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEK
                     IANGQYSHLVLLAAFDCIDDTKLVKQIIISEVISSLPSIVNDKYGRKVLLYLLSPRAP
                     AHLVPEIIQLLQKGDGNAHSKKDTAIRRRELLESISPALLSYLQGHTREVVLDKSVCV
                     LVSDILGSATGDAQPAMDAIAGLAAEELYPGGKDGELHIAEHPAGHLVLKWLIEQDKK
                     IKENGKEGCFAKTLVECVGMKNLKSWASINRGAIVLSSLLQSCDQDVVNKVKAGLKTL
                     IPTLEKTKSTSKGIQTLLEKLTA"
     exon            127..345
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
     exon            346..481
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
     exon            482..557
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
     exon            558..651
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
     exon            652..718
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
     exon            719..893
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
     exon            894..997
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
     exon            998..1076
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
     exon            1077..1175
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
     exon            1176..1229
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
     exon            1230..1310
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
     exon            1311..1453
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
     exon            1454..1676
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
     exon            1677..1764
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
     exon            1765..1855
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
     exon            1856..2115
                     /gene="Pum3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggaactcc gtgagcttct tccccacgtg tgcgaagtac tgtgatggaa gtcaaaggga
       61 agaaaaaaat tacaggaaag agtccacaga catcacaagg aaagaataaa tttcataaaa
      121 acagtgagtc tagttctgca aaggcattcc caaggaaagc tgctaaggaa ggcgggccta
      181 aagtcacatc taagaacttt gagaaaggtg ccacaaaacc tggcaagaag cgtgtgaagc
      241 agttcaagaa caagccacaa gggggcaaag gaccgaagga caaattccag aaggcaaata
      301 aattcaacaa gaagcggaaa ttccagccag atgggaaaag tgatgaatca gcagccaaga
      361 aacccaagtg ggatgacttc aaaaagaaga agaaagagct gaagcagaac agacagctca
      421 gtgataagac caattacgac gtcgtggttc gagcaaagca catttgggag agcttgagaa
      481 gaaaagactg tgacaaagaa aaaagggtga agctcatgag tgatttgcag aagctgattc
      541 aaggaaaaat taaaactatt gcctttgcgc atgactcaac tcgagtgatc cagtgcctca
      601 ttcagtatgg gagcgaggag cagaggaagt gggctttcga agaattgcaa ggtgacttgg
      661 ttgaattaag taaagccaaa tattccagga atatcgttaa gaaatttctc atgtatggaa
      721 gtaaaccaca gattgcggag ataatcagaa gttttaaagg tcatgtgagg aagatgctgc
      781 ggcattcaga ggcatcggcc attgtggagt atgcgtacaa cgacaaagcc attttggaac
      841 agaggaacat gctgacagag gagctctatg ggaacacatt tcagctttac aagtcagcag
      901 atcacccaac gctggaaaag gtgctagagg tgcagccagg gaagctagaa cttatcctgg
      961 atgagatgaa gcagattctg actcccatgg cccaaaagga agctgtgatt aagcactcac
     1021 tggttcataa agtattcttg gactttttta cctatgcacc cccaaaactt cgatcagaac
     1081 taattgaagc catccgggaa gcagtggtgt acctggccca cacacacgat ggcgccagag
     1141 tggccatgca ttgcttgtgg catggtacac ccaaggacag gaaagtgatt gtgaaaacaa
     1201 tgaagacgta tgtggagaag attgctaatg gccagtactc tcacctggtt ctcctggcag
     1261 cgttcgattg tattgatgat accaagcttg tgaagcagat aatcatatca gaagtcatca
     1321 gctccttgcc cagcatcgtt aatgacaaat atggaaggaa agtgctgctg tacctgctga
     1381 gcccccgagc ccccgcccac ttggtgccag agatcatcca gctgctgcag aagggcgacg
     1441 gcaatgcaca cagtaagaag gacactgcaa tccgccggcg tgagctcttg gagtccatct
     1501 ctccagcttt gctgagctac ctgcaaggac acactcggga ggtggtgctg gacaagtccg
     1561 tgtgtgtgct ggtgtctgac atcctgggat ctgctactgg ggacgctcag cctgctatgg
     1621 atgccatcgc cggtttggca gcagaggaac tgtatcctgg gggcaaggac ggagagctcc
     1681 acattgctga gcatcctgca ggacatctgg tcctcaaatg gttaatagag caagataaaa
     1741 agataaaaga aaatggaaaa gaaggttgtt ttgcaaaaac ccttgtagag tgcgttggta
     1801 tgaagaacct caagtcctgg gccagcatca accgaggagc catcgttctt tccagccttc
     1861 ttcagagttg tgaccaggac gttgtaaaca aagtcaaagc tggactgaaa accctgattc
     1921 ctaccttgga aaaaaccaaa agcaccagca aaggcatcca gactctgctt gagaagttga
     1981 ctgcataggc gcgccagatg agcaagctgg aacccgcttc ccgaggggaa gggtggaatc
     2041 tgtcacactc ataactggat gccctatgca tgtacttgtt aaaggaccta tttatatata
     2101 aaattgtaaa agagaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2161 aaaaaaaaa
//
