LOCUS       NM_001419508            1030 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus pseudouridine 5'-phosphatase (Pudp), transcript
            variant 2, mRNA.
ACCESSION   NM_001419508 XM_006254718
VERSION     NM_001419508.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1030)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Apr 4, 2023 this sequence version replaced XM_006254718.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.77314.1, CR476213.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-786               JAXUCZ010000018.1  46066462-46067247   c
            787-1030            JAXUCZ010000018.1  46064867-46065110   c
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18q11"
     gene            1..1030
                     /gene="Pudp"
                     /gene_synonym="Fam16ax; Hdhd1; Hdhd1a"
                     /note="pseudouridine 5'-phosphatase"
                     /db_xref="GeneID:291585"
                     /db_xref="RGD:1305101"
     exon            1..786
                     /gene="Pudp"
                     /gene_synonym="Fam16ax; Hdhd1; Hdhd1a"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..742
                     /gene="Pudp"
                     /gene_synonym="Fam16ax; Hdhd1; Hdhd1a"
                     /EC_number="3.1.3.96"
                     /note="family with sequence similarity 16, member A,
                     X-linked; haloacid dehalogenase-like hydrolase
                     domain-containing protein 1A; haloacid dehalogenase-like
                     hydrolase domain containing 1A;
                     pseudouridine-5'-monophosphatase"
                     /codon_start=1
                     /product="pseudouridine-5'-phosphatase"
                     /protein_id="NP_001406437.1"
                     /db_xref="GeneID:291585"
                     /db_xref="RGD:1305101"
                     /translation="MAEAVPVPQLRPVTHLIFDLDGLLLNTEDLYTDVFQAICSRYGK
                     KYNWDVKSLVMGKKAPETTQIIVDFLKLPISKEQLLEESQERLQKVLHTAALMPGAEE
                     LIHHLRKNRLPFALATSSATLSFQTKTSRYKGFFSLFHHIVLGDDPEVINSKPAPDIF
                     LTCAKRFSPPPNPEDCLVFEDSPNGVEAAVACGMQVVMVPHENLSSDLTTKATLVLSS
                     LHEFKPELFGLPAFDE"
     exon            787..1030
                     /gene="Pudp"
                     /gene_synonym="Fam16ax; Hdhd1; Hdhd1a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctcctcttg tgatcctgcc cctccaccac taccataatg gcggaggcag ttcctgtgcc
       61 ccagttacga cccgttacac acctgatatt tgacctggat ggacttcttc tgaatactga
      121 agatttatat actgatgtgt ttcaagcaat atgcagtcgc tacgggaaga aatacaactg
      181 ggatgttaag tccttggtca tggggaagaa ggctccagaa accacacaga tcatagtgga
      241 cttcctgaag ttgcccattt ccaaagaaca actattggaa gaaagccagg agaggctgca
      301 gaaggtgtta cacacagctg cgctgatgcc aggagctgag gaattgatcc accatctgag
      361 gaaaaaccgc ttaccctttg cgctggccac cagcagtgcg accctctctt tccaaacaaa
      421 gaccagtaga tacaaagggt tctttagttt atttcaccac atcgttctgg gagatgaccc
      481 tgaagtaata aatagcaagc cagccccaga tatatttcta acctgtgcca aaaggttctc
      541 tcctccccct aatccagaag actgcctcgt ctttgaagat tctccaaatg gggtggaggc
      601 agcagtggcc tgtgggatgc aggtagtcat ggtacctcat gaaaacctca gctcagacct
      661 aacaacaaaa gccaccctgg tgctgagttc cctccatgaa ttcaagcctg aactgtttgg
      721 tctacctgca tttgatgagt aaaggtgaaa agcgaccatg ctactgtggg cctcatataa
      781 cccaagatcg acttcacctt tggaattcag ctacaaattg tctactccta caaaggaatg
      841 agtgcagatg acttcctctg gatgtggact tatttcacat atcttagcaa actaccttaa
      901 cattatcaat ggcctgtaca tttgtttact caataattct tctccaaatc aactgggaca
      961 tcttatattt tgggttgtaa gcctagcctt taagatcctt acaagttaac taggtgaagc
     1021 aatatcgtgc
//
