LOCUS       NM_001106146            1046 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus pseudouridine 5'-phosphatase (Pudp), transcript
            variant 1, mRNA.
ACCESSION   NM_001106146 XM_001056925 XM_225938
VERSION     NM_001106146.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1046)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Apr 4, 2023 this sequence version replaced NM_001106146.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26360181.1441038.1,
                                        SRR26360186.933641.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, longest
                                      protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1046              JAXUCZ010000018.1  46066202-46067247   c
FEATURES             Location/Qualifiers
     source          1..1046
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18q11"
     gene            1..1046
                     /gene="Pudp"
                     /gene_synonym="Fam16ax; Hdhd1; Hdhd1a"
                     /note="pseudouridine 5'-phosphatase"
                     /db_xref="GeneID:291585"
                     /db_xref="RGD:1305101"
     exon            1..1046
                     /gene="Pudp"
                     /gene_synonym="Fam16ax; Hdhd1; Hdhd1a"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..742
                     /gene="Pudp"
                     /gene_synonym="Fam16ax; Hdhd1; Hdhd1a"
                     /EC_number="3.1.3.96"
                     /note="family with sequence similarity 16, member A,
                     X-linked; haloacid dehalogenase-like hydrolase
                     domain-containing protein 1A; haloacid dehalogenase-like
                     hydrolase domain containing 1A;
                     pseudouridine-5'-monophosphatase"
                     /codon_start=1
                     /product="pseudouridine-5'-phosphatase"
                     /protein_id="NP_001099616.1"
                     /db_xref="GeneID:291585"
                     /db_xref="RGD:1305101"
                     /translation="MAEAVPVPQLRPVTHLIFDLDGLLLNTEDLYTDVFQAICSRYGK
                     KYNWDVKSLVMGKKAPETTQIIVDFLKLPISKEQLLEESQERLQKVLHTAALMPGAEE
                     LIHHLRKNRLPFALATSSATLSFQTKTSRYKGFFSLFHHIVLGDDPEVINSKPAPDIF
                     LTCAKRFSPPPNPEDCLVFEDSPNGVEAAVACGMQVVMVPHENLSSDLTTKATLVLSS
                     LHEFKPELFGLPAFDE"
ORIGIN      
        1 gctcctcttg tgatcctgcc cctccaccac taccataatg gcggaggcag ttcctgtgcc
       61 ccagttacga cccgttacac acctgatatt tgacctggat ggacttcttc tgaatactga
      121 agatttatat actgatgtgt ttcaagcaat atgcagtcgc tacgggaaga aatacaactg
      181 ggatgttaag tccttggtca tggggaagaa ggctccagaa accacacaga tcatagtgga
      241 cttcctgaag ttgcccattt ccaaagaaca actattggaa gaaagccagg agaggctgca
      301 gaaggtgtta cacacagctg cgctgatgcc aggagctgag gaattgatcc accatctgag
      361 gaaaaaccgc ttaccctttg cgctggccac cagcagtgcg accctctctt tccaaacaaa
      421 gaccagtaga tacaaagggt tctttagttt atttcaccac atcgttctgg gagatgaccc
      481 tgaagtaata aatagcaagc cagccccaga tatatttcta acctgtgcca aaaggttctc
      541 tcctccccct aatccagaag actgcctcgt ctttgaagat tctccaaatg gggtggaggc
      601 agcagtggcc tgtgggatgc aggtagtcat ggtacctcat gaaaacctca gctcagacct
      661 aacaacaaaa gccaccctgg tgctgagttc cctccatgaa ttcaagcctg aactgtttgg
      721 tctacctgca tttgatgagt aaaggtgaaa agcgaccatg ctactgtggg cctcatataa
      781 cccaaggttg gttcaggacc cacatgactg agtggaaatg ttaggaaatc aacagcatcc
      841 aaattgtaac ttttattgtc actggaggtt ataaagtcac gttttccatt atttattcag
      901 tctcctctgt gatttgctct acatttgaca gtggaaagaa aacgaaagag agctcagact
      961 aaccatctac agttactatc taaagtaaag ctgacttgat atacaataaa gggagtgtgc
     1021 aagcatgtat atatacacgt gaatat
//
