LOCUS       XM_220237               3046 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus pentraxin 4 (Ptx4), mRNA.
ACCESSION   XM_220237
VERSION     XM_220237.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_220237.6.
            
            On Jan 21, 2021 this sequence version replaced XM_220237.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3046
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3046
                     /gene="Ptx4"
                     /note="pentraxin 4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:287130"
                     /db_xref="RGD:1311190"
     CDS             217..1713
                     /gene="Ptx4"
                     /codon_start=1
                     /product="pentraxin-4"
                     /protein_id="XP_220237.4"
                     /db_xref="GeneID:287130"
                     /db_xref="RGD:1311190"
                     /translation="MRQTQGTKGQTSAPASVCPSMEFLKKNTLPFLLVFVSMYIHGTP
                     SQGADPARQRKPFFERLRRLEEQFQRFQQVTLTHLQDIASNYNVYYNMDARFQGLVEQ
                     SQAIALAMNQSQAAIQGDVAQLKTWFRKSQRRSRKMDARLQALDLSLNTKNRQWVEEE
                     KEQKAQREATASLAVSFRALQDALASLTQQVHSQDARLAVLEGQIQRSSPSTVALGLT
                     TAPSPTQLAHRGPGSLQLWRKSQASKSSSQHRSSSQDFTVHVQEMQKSQAPSNHQAAS
                     LRTYQGPGNICGTGPVLIFPNTSTENVIFLSPGLLVPLRALTFCSWVRMATSYLGTLL
                     SYATDDNDNKLVLHGRDSLVPGSIHFVIGDPIFRELSLQPLLDGQWHHICIIWTSVEG
                     KYWLHVDRRIVATGSRFREGYEIPPGGSLVLGQEQDTVGGEFDSSEAFVGSISGLAIW
                     DRALLPGEVANLASGKELPTGALLTLTNVTSVGGFVQRVKCTCLEQCP"
ORIGIN      
        1 caagcaaagc ctcaagcaca tccagtagaa caatttccca gagaaactgt ttgtgcctgt
       61 ttgaagctcg tttccctggg aaccttgggt tctcagagcc caccggactg aaggcagata
      121 tgcctttcat taaggtggca ggaagagcct gacactcggc caggacagaa agaagaaaac
      181 cagtcacgtg gttggctttg atcgaggagc agggatatga gacagactca aggaacaaag
      241 ggacagacat cagctcctgc ctctgtgtgt cccagcatgg agttcttgaa gaagaatact
      301 ctgccttttc ttcttgtatt tgtgtccatg tatatacacg ggactccatc acagggagct
      361 gacccagcta ggcaaagaaa gccatttttc gagagactcc gtcgactaga agagcagttt
      421 cagagattcc aacaggtgac cttaacacac ctgcaggaca ttgccagcaa ctacaatgtg
      481 tactacaata tggacgcccg cttccagggc ctggtggaac agagccaagc catagctcta
      541 gcgatgaatc agtctcaagc tgccatacaa ggagatgtgg cccaactaaa gacctggttt
      601 aggaagagtc agcgaaggag ccggaagatg gatgctcggc tccaagcctt ggacctctcc
      661 ctgaacacaa agaacaggca gtgggtggag gaggagaagg agcaaaaggc acagagggag
      721 gctactgcaa gcctggccgt aagctttagg gcactacagg atgcgctggc cagcctcaca
      781 cagcaagtcc atagccagga tgccaggctc gctgttcttg agggacagat acagaggtcc
      841 tcccctagta ctgtggccct ggggctgacc acagccccca gccccaccca gcttgctcat
      901 cgaggccctg gttccttgca actgtggagg aagagccagg catccaagtc ttcatcccaa
      961 cacaggagtt cctcccaaga cttcactgtc cacgtccagg agatgcagaa gtcccaagcc
     1021 ccaagcaacc atcaagcagc ctcactgagg acctaccaag gaccaggaaa catttgcggc
     1081 acgggcccag tgctgatttt ccccaatacc tccactgaaa atgtgatctt tctcagccct
     1141 ggcctcctcg tgcccctacg agctctgacc ttctgcagtt gggtccgcat ggccaccagc
     1201 tacctgggca ccctcctttc ctatgccacc gacgacaatg acaacaagtt agtgctgcat
     1261 ggccgagact ccctggtccc cggctccatt cactttgtga tcggagaccc gatcttcagg
     1321 gaattgtccc tgcaaccgct cctggatggt cagtggcacc acatttgtat catctggaca
     1381 tccgtggagg gcaagtactg gctccatgta gacagaagga tagtagccac cggctcccgc
     1441 ttcagagagg gctatgagat ccctcctgga gggtcgcttg tgctgggcca ggaacaagac
     1501 actgtggggg gtgagtttga cagctctgag gccttcgtag ggagcatatc tggcttggcc
     1561 atctgggacc gggcactgct ccctggagaa gttgccaacc tggcctctgg gaaagagctc
     1621 ccgacaggtg cccttctgac gctaaccaat gtcacatccg taggtggatt tgtgcagaga
     1681 gtcaaatgta catgcctgga acagtgtccg taaggccgtc acacagagac tgcatcacag
     1741 tcaatgccat caagaagagt aagcctcata ccagaacact cccctgccgt gactgctgag
     1801 ctatgtgcgc ctgtgctcta atgtaggagc ttcccacatg gagacgcaga ttagacagaa
     1861 aatgtgcaag gggaggaaag gggggtccaa gaaggcaact tcccattgct gtggcattct
     1921 ttggtttgca gttttgattg gttgttgttt tctgaactag ggtctcatcc tgtgggcctt
     1981 attggcttag aactcactct gcatccccag actggctcca aacccatagc aatctgccac
     2041 cagggtgctg agattccaga tgtgagtcac cgctccccca ctcctttctc tctttttctt
     2101 ttttcttttt ttctttttct ttcttttttc tttttttcgg agctggggac cgaacccagg
     2161 gccttctgct tgctaggcaa gcgctctacc actgagctaa atccccaacc ccttctctct
     2221 ttttcttttg acagattctc actatatagg ccagcttagc ttgcattcat gaccctccac
     2281 cctctcaagt gctaagacac tggccttcac ggtgatattt ttacaggctg caccttcaaa
     2341 gccattcttg tttcctgtgt ggtcttttac cccagctgag ttggcagaca ggaacattgg
     2401 ggctgggtgg acttccttct aaagcacctt tgtagccacg aaatgctgtc agacagatga
     2461 tagaacctgg ggactccctt gaagttataa gaagtacttt taccatagtt gtctcttctc
     2521 atagcgctct accactgagc taaatccaaa aaaagggatt ggggactgag ctaaatccaa
     2581 aaaaagggat tggggattta gctcagtggt agagcgcttg cctaggaagc gcaaggccct
     2641 gggttcggtc cccagctccg aaaaaaagaa ccaaaaaaaa aatcttaaaa aaaaagacaa
     2701 actagcaatg ctttaaaact taatttgcca ggcattattt tcacattata atatgtgccc
     2761 ctttaagagt ttctttttgg ggctggggat ttagctcagt ggtagagcgc ttacctagga
     2821 agcgcaaggc cctgggttcg gtccccagct ccaaaaaaaa aaaaaaaaaa agagtttctt
     2881 tttaaagatt ataataaaag tgctgagttg tgcgcccatc acaatctagt tttatttagt
     2941 tttcttttaa aatattcttt tggtttttgg aggcagggtt tctctatgta gccctagctg
     3001 tcttagaact cactctgtag accagactgg ccttgaactc agaact
//
