LOCUS       XM_039083051            6932 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor
            type, S (Ptprs), transcript variant X1, mRNA.
ACCESSION   XM_039083051
VERSION     XM_039083051.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6932
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6932
                     /gene="Ptprs"
                     /gene_synonym="Larptp2; Ptprd; Ptpsigma; Ptpsigma.; Rptpd"
                     /note="protein tyrosine phosphatase, receptor type, S;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 81 ESTs, 7 long SRA reads, 17
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 27 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:25529"
                     /db_xref="RGD:3452"
     CDS             255..6035
                     /gene="Ptprs"
                     /gene_synonym="Larptp2; Ptprd; Ptpsigma; Ptpsigma.; Rptpd"
                     /codon_start=1
                     /product="receptor-type tyrosine-protein phosphatase S
                     isoform X1"
                     /protein_id="XP_038938979.1"
                     /db_xref="GeneID:25529"
                     /db_xref="RGD:3452"
                     /translation="MAPTWRPSVVSVVGPVGLFLVLLARGCLAEEPPRFIREPKDQIG
                     VSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIDFDESSGAVLRIQPLRTPRDE
                     NVYECVAQNSVGEITVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAASG
                     NPDPEITWFKDFLPVDPSASNGRIKQLRSESTPIRGALQIESSEETDQGKYECVATNS
                     AGVRYSSPANLYVRELREVRRVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWM
                     QGAEDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAPGT
                     PVVTENTATSITVTWDSGNPDPVSYYVIEYKSKSQDGPYQIKEDITTTRYSIGGLSPN
                     SEYEIWVSAVNSIGQGPPSESVVTRTGEQAPASAPRNVQARMLSATTMIVQWEEPVEP
                     NGLIRGYRVYYTMEPEHPVGNWQKHNVDDSLLTTVGSLLEDETYTVRVLAFTSVGDGP
                     LSDPIQVKTQQGVPGQPMNLRAEAKSETSIGLSWSAPRQESVIKYELLFREGDRGREV
                     GRTFDPTTAFVVEDLKPNTEYAFRLAARSPQGLGAFTAVVRQRTLQAKPSAPPQDVKC
                     TSLRSTAILVSWRPPPPETHNGALVGYSVRYRPLGSEDPDPKEVNNIPPTTTQILLEA
                     LEKWTEYRVTAVAYTEVGPGPESSPVVVRTDEDVPSAPPRKVEAEALNATAIRVLWRS
                     PTPGRQHGQIRGYQVHYVRMEGAEARGPPRIKDIMLADAQWEMDDTAEYEMVITNLQP
                     ETAYSITVAAYTMKGDGARSKPKVVVTKGAVLGRPTLSVQQTPEGSLLARWEPPADAA
                     EDPVLGYRLQFGREDAAPATLELAAWERRFAAPAHKGATYVFRLAARGRAGLGEEASA
                     ALSIPEDAPRGFPQILGAAGNVSAGSVILRWLPPVPAERNGAIIKYTVSVREAGAPGP
                     ATETELAAAAQPGAETALTLQGLRPETAYELRVRAHTRRGPGPFSPPLRYRLARDPVS
                     PKNFKVKMIMKTSVLLSWEFPDNYNSPTPYKIQYNGLTLDVDGRTTKKLITHLKPHTF
                     YNFVLTNRGSSLGGLQQTVTARTAFNMLSGKPSVAPKPDNDGSIVVYLPDGQSPVTVQ
                     NYFIVMVPLRKSRGGQFPILLGSPEDMDLEELIQDLSRLQRRSLRHSRQLEVPRPYIA
                     ARFSILPAVFHPGNQKQYGGFDNRGLEPGHRYVLFVLAVLQKNEPTFAASPFSDPFQL
                     DNPDPQPIVDGEEGLIWVIGPVLAVVFIICIVIAILLYKNKPDSKRKDSEPRTKCLLN
                     NADLAPHHPKDPVEMRRINFQTPGMLSHPPIPITDMAEHMERLKANDSLKLSQEYESI
                     DPGQQFTWEHSNLEANKPKNRYANVIAYDHSRVILQPLEGIMGSDYINANYVDGYRRQ
                     NAYIATQGPLPETFGDFWRMVWEQRSATVVMMTRLEEKSRVKCDQYWPNRGTETYGFI
                     QVTLLDTMELATFCVRTFSLHKNGSSEKREVRHFQFTAWPDHGVPEYPTPFLAFLRRV
                     KTCNPPDAGPVVVHCSAGVGRTGCFIVIDAMLERIRTEKTVDVYGHVTLMRSQRNYMV
                     QTEDQYSFIHEALLEAVGCGNTEVPARSLYTYIQKLAQVEPGEHVTGMELEFKRLASS
                     KAHTSRFITASLPCNKFKNRLVNILPYESSRVCLQPIRGVEGSDYINASFIDGYRQQK
                     AYIATQGPLAETTEDFWRALWENNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFV
                     VDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPEQGAPKSGEGFIDFIGQVH
                     KTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKVLRTQRPAM
                     VQTEDEYQFCFQAALEYLGSFDHYAT"
ORIGIN      
        1 cagagccgcc gcggcggaag gggtgacgtc accggctggg ggcgcgggag ccgcagtggg
       61 tttttgcccc gcccgccagg cagctccggc cgtgcgcgca cgccgagccg ccggagcccg
      121 ggccgacccg gtgccgggag cagcatgcgg agcccgcagc cgctgctcct ctggacacct
      181 cagcctgagg cctctccgtg agttacgggg acaccatccc ccaccagggc ggaggctgga
      241 ggccactgcc aagcatggcg cccacctgga gacccagcgt ggtgtctgtg gtgggtcctg
      301 tggggctctt ccttgtactg ctggccagag ggtgcttggc tgaagagcca cccagattta
      361 tcagagagcc caaggatcag attggtgtgt caggaggcgt ggcctccttc gtgtgccagg
      421 ccacaggtga ccctaagcca cgggtgacct ggaacaagaa gggcaagaaa gtgaactcac
      481 agcgctttga gaccattgac tttgacgaga gctcgggggc cgtgctgagg atccagccac
      541 ttcggacacc ccgggatgag aacgtgtacg agtgtgtggc ccagaactcg gtgggggaga
      601 tcacagttca tgcgaagctc accgtcctgc gagaggacca gctgcctcct ggcttcccca
      661 acattgacat gggcccccag ttgaaggttg tagagcgcac acgcacagcc accatgctct
      721 gtgctgccag cggaaaccct gaccctgaga tcacctggtt caaggacttc ctgcctgtgg
      781 accccagtgc cagcaatggg cggatcaagc agcttcggtc agaaagcacc cctatccgag
      841 gtgccctgca gattgagagc agcgaggaga cagaccaggg caagtacgag tgtgtggcca
      901 ccaacagcgc tggggtgcgc tactcatcac ctgccaacct ctacgtgcga gagcttcgag
      961 aagtccgccg tgtggccccc cgcttctcca tcctgcccat gagccacgag atcatgcccg
     1021 gtgggaatgt gaatatcact tgtgtggctg tgggctcacc catgccctac gtgaagtgga
     1081 tgcagggggc agaggacctg acgcctgagg atgacatgcc cgtgggtcgg aatgtcctcg
     1141 aactcacgga tgtcaaagac tcagccaact atacttgtgt ggccatgtcc agcctgggag
     1201 tgatcgaggc cgttgctcag atcactgtaa aatctctccc caaagcccct gggactcccg
     1261 tggtgacgga gaacactgct accagtatca ctgtcacatg ggactcaggc aatcctgacc
     1321 ctgtgtccta ctacgtaatt gagtataaat ccaaaagcca ggatgggccg tatcagatca
     1381 aagaagacat caccaccacg cgctacagca tcggcggcct gagccccaac tctgagtatg
     1441 agatctgggt gtcagctgtc aactccatcg gccagggccc ccccagtgag tcggtggtga
     1501 cccgcacagg cgagcaggca ccagccagtg ctcccaggaa tgttcaggcg cgcatgctca
     1561 gtgccaccac catgattgtg cagtgggagg agcccgtgga gcccaatggc ctgatccgtg
     1621 gctaccgcgt ctactacacc atggagcccg agcatccggt gggcaactgg cagaagcaca
     1681 atgtggacga cagtcttctg accactgtgg gcagcctgct agaggatgag acctacactg
     1741 tgagagtgct cgccttcaca tcggtgggcg atgggccact gtcagacccc atccaggtca
     1801 agacccagca gggagtgccc ggccagccca tgaacttgcg ggctgaggcc aagtcagaga
     1861 ccagcattgg gctctcgtgg agtgcaccac ggcaggagag tgtcattaag tatgaactgc
     1921 tcttccggga gggcgaccga ggccgagagg tggggcgaac cttcgaccca accacagcct
     1981 ttgtggtgga ggacctcaag cccaatacgg agtacgcgtt ccggctggcg gctcgctcgc
     2041 cgcagggcct gggcgccttc accgcggttg tgcgccagcg cacactgcag gccaaaccgt
     2101 cagccccccc tcaagacgtt aagtgcacca gcttgcgctc cacggccata ttggtaagtt
     2161 ggcgcccgcc accgccagaa actcacaacg gggccctggt gggctacagc gtccgctacc
     2221 gaccgctggg ctcagaggac ccggacccca aggaggtgaa caacataccc ccgaccacca
     2281 ctcagatcct tctggaagct ttggagaaat ggacggagta ccgtgtcacc gccgtggctt
     2341 acacagaggt gggaccaggg cccgagagct cgcccgtggt cgtccgcacc gatgaggacg
     2401 tgcccagcgc gcccccgcgg aaggtggagg cggaggcgct caacgccacg gctatccgag
     2461 tgctgtggcg ctcgcccacg cccggcaggc agcacgggca gatccgcggc taccaggtcc
     2521 actatgtgcg catggagggc gccgaggccc gcgggccacc gcgcatcaag gacatcatgc
     2581 tggcggatgc ccagtgggag atggacgaca ctgccgaata tgaaatggtg atcacaaacc
     2641 tccagcctga gactgcttac tctatcacag tagccgcgta taccatgaaa ggcgatggcg
     2701 ctcgcagcaa accgaaggtg gtggtgacca agggagcagt gctgggccgc cccaccctgt
     2761 cggtgcagca gacccccgag ggcagcctgc tggcgcgctg ggagcccccc gcggacgcgg
     2821 ctgaggaccc agtgcttggc taccgcctgc agtttgggcg cgaagacgcg gccccggcca
     2881 cgttggaact ggcggcgtgg gagcggcggt tcgcggcgcc tgcacacaag ggcgccacct
     2941 atgtgtttcg gctggcggcg cggggccgcg cggggctggg cgaggaggcc tcggcggcgc
     3001 tgagcatccc tgaggacgct ccgcgtggct tcccgcagat cctgggcgcc gcgggcaacg
     3061 tgtccgcggg ctccgtaata ctgcgctggc tgccacccgt gcccgccgag cgcaacggcg
     3121 ccatcatcaa gtacacggtg tccgtgcggg aggccggcgc cccagggccc gcgacagaga
     3181 ccgaactggc ggcggcggcc cagccggggg ccgagacagc gctcacacta caggggctgc
     3241 ggccggagac ggcctacgag ctgcgcgtgc gcgcgcacac gcgtcggggc cccggcccct
     3301 tctcaccccc gctgcgatac aggcttgcgc gggacccagt ctcccccaag aacttcaagg
     3361 tgaagatgat catgaaaact tcagtgctgc taagctggga gttccctgac aactataact
     3421 cacccacgcc ctacaagatc cagtacaatg gactcacact ggacgtggat ggccgcacta
     3481 ccaagaagct gatcacgcac ctcaagccac acaccttcta taacttcgtg ctcaccaacc
     3541 gtggcagcag cctgggaggc ctgcagcaga cggtcaccgc caggaccgcc ttcaacatgc
     3601 tcagtggcaa gcctagtgtc gccccaaagc ctgacaacga tggttccatt gtggtctacc
     3661 tgcctgatgg ccagagtccc gtgacagtgc agaactactt cattgtgatg gtcccacttc
     3721 ggaagtctcg tggtggccag ttccctatcc tactaggtag tccagaggac atggatctgg
     3781 aggagctcat ccaggacctc tcccggctgc agaggcgcag cctgcgccac tcaagacagc
     3841 tggaggtgcc tcggccttac atcgccgctc ggttctccat cctgccagct gtcttccatc
     3901 ctgggaacca gaagcaatat ggtggctttg acaacagggg cttggagcca ggccaccgtt
     3961 atgtcctctt tgtacttgct gtgctgcaga agaatgagcc tacatttgca gccagtccct
     4021 tctcagaccc cttccaactg gacaacccag acccgcagcc cattgtggat ggcgaggagg
     4081 gcctcatctg ggtgatcggg cccgtgctgg ccgtggtctt catcatctgc atcgtaattg
     4141 ccatcctgct gtacaagaac aagcctgaca gcaaacgcaa ggactcagag ccccgcacca
     4201 aatgcttatt gaacaatgca gacctcgccc cccatcaccc caaggaccct gtggaaatgc
     4261 gacgtatcaa cttccagacg ccaggtatgc tcagccaccc gcccattccc atcacagaca
     4321 tggctgaaca catggagaga ctcaaagcca acgacagcct caagctctcc caggagtatg
     4381 agtccatcga ccctggccag cagttcactt gggaacattc gaacctggag gccaacaagc
     4441 caaagaaccg atacgccaat gtcatcgcct atgaccattc acgagtcatc ctgcagcctt
     4501 tagaaggcat catgggtagt gattacatca atgccaacta tgtggacggc tatcggcggc
     4561 agaacgcata catcgccacg caggggcccc tgcctgagac ctttggggac ttctggcgga
     4621 tggtgtggga gcagcggtca gccactgtgg tcatgatgac acggctggag gagaaatcac
     4681 gggtcaaatg tgaccagtac tggcctaacc gaggcaccga gacatacggc ttcatccagg
     4741 tcaccctact agatactatg gagctggcca ccttctgtgt caggaccttt tctctacaca
     4801 agaatggctc tagtgagaag cgtgaggtac gacattttca gttcacagca tggcctgacc
     4861 acggggtacc cgagtacccc acacccttcc tggcgtttct gcgcagagtc aagacctgca
     4921 acccgcctga cgctggccca gttgtggtcc actgcagcgc gggtgtgggg cgtactggct
     4981 gcttcattgt aattgatgcc atgttggagc gcatcagaac agagaagacg gtggatgtgt
     5041 acggacacgt gacactcatg cggtcacagc gcaactacat ggtgcagaca gaggatcagt
     5101 atagcttcat ccacgaggca ctgctggagg ctgtgggctg tggcaatacc gaggtccccg
     5161 cgcgcagcct ctacacctat atccagaagc tggcccaggt ggagcctggc gagcatgtca
     5221 caggaatgga gcttgagttc aagaggcttg ccagctccaa ggcacacact tcgagattca
     5281 tcactgccag cctgccttgc aacaagttta agaaccgcct ggtgaacatc ctgccgtacg
     5341 agagctcgcg tgtctgcctg cagcccattc gtggtgtcga gggctctgac tacatcaatg
     5401 ccagcttcat cgacggctac agacagcaga aagcctacat tgcaacgcag ggtccactgg
     5461 cagagaccac agaggacttc tggcgtgccc tgtgggagaa caactccact attgtggtaa
     5521 tgctcaccaa gctccgcgag atgggccggg agaagtgcca ccagtactgg ccagctgagc
     5581 gctctgcccg ctaccagtac tttgtggttg acccgatggc agagtataac atgccacagt
     5641 acattctgcg tgagtttaag gtcacagatg cccgggatgg ccagtcccgg accgtccgac
     5701 agttccagtt cacggactgg ccagagcagg gtgcacccaa gtcaggggaa ggcttcattg
     5761 acttcatcgg ccaagtgcat aagaccaagg agcagtttgg ccaggatggc cccatctcgg
     5821 tgcactgtag tgctggagtg ggcaggaccg gagtattcat cactctgagc atcgtgctgg
     5881 agcgaatgcg ctacgagggg gtggtggaca ttttccagac agtgaaggtg cttcggaccc
     5941 agcggcctgc catggtgcag acagaggatg agtaccagtt ctgcttccag gcggcgttgg
     6001 aatacctggg cagctttgat cattatgcaa cataagccat gggccccgcc caacacctcg
     6061 acccagctcc aagtgccctg aatgtgagcc cagccctcgg tgctgggtgg gaggcggccc
     6121 agggaggaaa cctcctctcc ctggagacag gcactgcctt ctgaagggca cattcctcat
     6181 tcccttctga ctccaaaacg aggttccagg gtggggggta gggtggagag tagaggagcc
     6241 actgctcccc atagctgggg tcacaaggga cagaactctg ctcccacact tccctgcctg
     6301 cctgtcagca acattctttt tttcattttt ttaatagtgt atttttttct tcatctttct
     6361 tttttttttt taaagaaaaa aaaaaacaaa atcgtgccag tcaaattttt gaaaaacaaa
     6421 cgagatcact gtttgtgcct ctgtgggagg ccaacttttt catagtaagt gtgtcgtgtg
     6481 gcggctctgt gcaacaactt tgatggcttc tgtgtgcatt cttcccacat gtccccgtgt
     6541 gaatggctca cgtaggtttt ctttttaccc tttttacttt ttttttaaat caatcttcag
     6601 acatatcaga tgtgaagggt gaggtgctgg gagcacctgg gccaggctgc agggacatgg
     6661 ccaccaggac acagtggctg gcctcactgc cccagtccct ggcgcaccag agagggtctt
     6721 tgtcctctcc tgacctccat gccccgcatg gaggaccccc gggactacgg gacacttggg
     6781 ggacacgcag ccccctagag caagtgaggt ctctctttgt aggagagtgg gtcagcactc
     6841 gtccccgctt gttttttggg cagaagcagc gggtgacagc cctgtatgta gataaaccaa
     6901 gtttgtatta aagaaagatt cgtccgacct ag
//
