LOCUS       XM_039104655            7704 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor
            type, J (Ptprj), transcript variant X3, mRNA.
ACCESSION   XM_039104655
VERSION     XM_039104655.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7704
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7704
                     /gene="Ptprj"
                     /gene_synonym="DEP-1"
                     /note="protein tyrosine phosphatase, receptor type, J;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 22 ESTs, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 153 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:29645"
                     /db_xref="RGD:3454"
     CDS             54..4115
                     /gene="Ptprj"
                     /gene_synonym="DEP-1"
                     /codon_start=1
                     /product="receptor-type tyrosine-protein phosphatase eta
                     isoform X3"
                     /protein_id="XP_038960583.1"
                     /db_xref="GeneID:29645"
                     /db_xref="RGD:3454"
                     /translation="MTRGGGRGSSRGRGSPELDATRGGWAPLAPPREAPACLGPRPLR
                     VRSARLRRVAAAAAAAMSPGKPGAGGAGTRRTGWRRRRRRRRLEAETRAPGFGHTAGR
                     VPGTFQGAQGMKPAARETRTPPRSPGLRWALLPLLLLLRQGQVVCAGAVAPSPVFDVE
                     AVTSPTSVVLTWKHNDSATSEYKINEGNTLRYTVKNQTSFNITGLSPATSYKFSITLG
                     TVNETSGKPTYKNITTEPWPVSDLQVAYIGVTQALLAWSNANGTASYRMQIVELTTNS
                     SGGISDLKPGTHKSLAVQGSNETQHDLWVTEGVSDANGTEGSPVANISQLHKNSLASA
                     DPPSARDPSLTEVLLTELKPDTQYKVTIYSQAADGTEGQPGNKVFKTNPIQVSDIRAV
                     NISDSNMTLTWKSNNNESHASFTYKIYVAGGSDSINETVNETQAVIRGLSSSTLYNIT
                     VLPFLGQTAGIPGFLQVYTSPRPVSDFRVTNVSLREIGLAWRSNDSESFEIFITQEGS
                     EKRWNASTGDLSYIVENLKPGTSYQFEIFPRGPNGTEGPSQTVVGRTDCSAVTDIRVV
                     SVSTTEIQLEWQNTDSASGYTYHLVLESENGSIKTNSSQKWITVGGLTPGTLYNVTIF
                     PEVDQMEGNSSSITQYTRPSNVSYIEVNTNTTVAAIQWKNLDAASASYSYSVLILKAG
                     DGSNVTSRVRDIPSVTIPGLIPGVSYEVKIFTKIRNTEVGNEVPGQKLFCMEPAQVDS
                     LHCEVVPKEPALVLKWACPPGMNSGFELGVRSDAWDNMTHLENCTLDNDTECRTEVTY
                     LNFSTSYNISIATLSCGKMALPTQSTCTTGITDPPPPDGSPNITSVSHNSVKVKFSGF
                     EASHGPIKAYAVLLTTGEAGQPSTDVLKYTYEDFKKGASDTYVTYLIRIEEKGQSQGL
                     SEALNYEIDVGNQSTTLGYYNGRLEPLGSYRACVAGFTNITYNLQNDGLINGDESYVS
                     FSPYSEAVSLPQDPGVICGAVFGCIFGALAIVAVGGFIFWRKKRKDAKNNEVSFSQIK
                     PKKSKLIRVENFEAYFKKQQADSNCGFAEEYEDLKLIGISLPKYAAEIAENRGKNRYN
                     NVLPYDISRVKLSVQTHSTDDYINANYMPGYHSKKDFIATQGPLPNTLKDFWRMVWEK
                     NVYAIVMLTKCVEQGRTKCEEYWPSKQAQDYGDITVAMTSEVVLPEWTIRDFVVKNMQ
                     SSESHPLRQFHFTSWPDHGVPDTTDLLINFRYLVRDYMKQIPPESPILVHCSAGVGRT
                     GTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLDIIRAQKD
                     SKVDLIYQNTTAMTIYENLEPVSMFGKTNGYIA"
ORIGIN      
        1 aggggaggag agggggccga gcgctccgcg cggctccctg cagccggagc cgcatgacgc
       61 gcggaggagg cagagggagc agccggggcc gcgggagccc ggagctggac gccacgcgcg
      121 gggggtgggc gccgcttgct ccgccccgcg aagcccctgc gtgtctaggg ccgcggccgc
      181 tccgcgttag gagcgctagg ctccgccgtg tggccgccgc cgccgccgct gccatgtccc
      241 cggggaagcc cggggcgggc ggagcgggga ctaggcggac cggctggcgg agaaggaggc
      301 ggaggcgtcg gctggaggcg gagaccaggg cgcccggctt cgggcacacg gcggggcgcg
      361 tcccgggcac gttccagggc gcgcagggca tgaagcccgc ggcgcgggag acgcggacac
      421 ccccgcgctc gcccgggctc cgctgggcgc tgctgccgct gctgctgttg ctacgccagg
      481 gccaggttgt gtgcgcaggt gcggtagcgc ccagtcctgt atttgacgtt gaagctgtca
      541 ccagccctac cagtgtggta ttaacgtgga aacacaatga ttcagccact tcagaatata
      601 agataaatga gggaaacacg ctgcggtata ctgttaaaaa ccagacatca tttaacatca
      661 caggcttaag cccagctact tcctacaaat tctccatcac cttgggaaca gtcaatgaga
      721 cctcaggaaa gcccacatac aaaaatatca caacagagcc ctggccagtg tcggatctcc
      781 aagtcgccta catcggtgtg acacaggctc ttctcgcctg gagcaatgca aacggcaccg
      841 cttcttaccg gatgcagatt gtagagctga ccacaaattc atcaggtggt atttcagatc
      901 tgaagccggg gacccataag agcttggctg tccaaggatc gaatgagacc cagcatgact
      961 tatgggtcac agaaggcgtc tcggatgcca atggcaccga gggaagccca gtggccaaca
     1021 tatcccaact acataagaat tctcttgcct ctgcagaccc accctctgcc cgggatccct
     1081 ccctcacaga ggtcttgctc actgagctaa agcctgatac tcagtacaaa gtcaccattt
     1141 attctcaagc agcagatggc acagaaggac agcctgggaa caaagtgttt aaaacaaatc
     1201 ccatccaagt ttctgacatc cgagctgtga acatcagtga ctcgaacatg accctgacct
     1261 ggaaaagcaa caataatgag tcccatgctt catttaccta caaaatatac gtggctgggg
     1321 gttccgactc catcaacgaa actgtcaatg agactcaggc cgtcatccgt ggactcagct
     1381 ccagtacctt gtacaacatc acagtgcttc ctttcctggg tcagaccgcg ggtataccag
     1441 gcttcctcca agtgtacact tccccccgtc ctgtttctga cttccgagtg acaaatgtca
     1501 gcctgaggga aatcggtttg gcttggagaa gcaatgactc ggagtcattc gagattttca
     1561 tcacgcagga gggaagtgag aaacgttgga atgcttcgac gggagacctg agctatatcg
     1621 ttgaaaattt aaagcctggg accagttacc aatttgaaat attcccacga ggaccaaatg
     1681 ggactgaagg gccatcccag acagttgttg gtagaactga ctgcagtgct gtgactgaca
     1741 tccgcgtggt cagcgttagc accactgaaa tacagctgga gtggcagaat acagacagtg
     1801 cttctggata cacttaccat ttagttctag agtctgagaa tggctccatc aagaccaaca
     1861 gttctcagaa atggatcaca gtggggggcc ttaccccagg caccttatac aatgttacaa
     1921 tctttccaga agtggaccag atggagggca actccagctc tattacccag tacacaaggc
     1981 ccagcaatgt gtcctacatt gaagtaaaca ccaacaccac cgtggcagcc atccagtgga
     2041 agaacctgga cgcagcctct gcttcctact cctactccgt tcttatcttg aaggctggag
     2101 atggcagcaa tgtaaccagc agggtcagag acatcccttc tgtcaccatc cctgggctaa
     2161 tccccggcgt ctcttacgaa gtgaagatct ttacaaagat taggaataca gaggttggga
     2221 atgaggtacc tggtcagaag ctgttctgta tggaacctgc acaagtggat tccttacact
     2281 gtgaagtggt cccgaaggag ccagcgctgg ttctgaagtg ggcctgcccc cctggcatga
     2341 actcaggctt tgaactgggg gtcaggagtg atgcttggga caatatgaca cacttggaga
     2401 actgcacttt ggacaatgac acagagtgca ggacagaagt cacctatttg aatttttcta
     2461 cctcgtacaa catcagcatt gccaccttgt catgtggaaa gatggcattg cccacccaga
     2521 gcacctgcac cactggcatc acagacccac ctcctccaga tggatcccct aatattacat
     2581 cggtcagtca caattcagta aaggtgaagt tcagtggttt tgaagccagc catggaccta
     2641 tcaaagccta tgctgtcctt ctcaccacag gggaagctgg ccaaccctcc acagatgttt
     2701 tgaagtacac atatgaagat ttcaaaaagg gagcctccga tacttatgtg acatacctca
     2761 taaggataga agagaaggga cagtctcagg gcttgtctga agcattgaac tatgagattg
     2821 atgtggggaa ccaatccact accctcggct actacaacgg gaggctagag cctctgggct
     2881 cctaccgggc ttgcgttgct ggctttacca atattaccta caaccttcag aacgatggcc
     2941 ttattaatgg ggatgagagc tatgtatctt tcagtccgta ttcagaggcc gtgtccttgc
     3001 ctcaagatcc aggtgtcatc tgcggagcgg tgttcggatg tatctttggt gccctggcca
     3061 ttgtggctgt gggaggcttc atcttctgga gaaagaaaag gaaagatgcc aagaataatg
     3121 aagtgtcctt ttctcaaatt aaacctaaaa aatccaagtt aatccgagtg gagaattttg
     3181 aggcctactt taagaaacag caagccgact ccaactgtgg gtttgcagag gaatatgagg
     3241 atctgaagct gattggaata agtttaccta aatatgcagc ggaaatagct gaaaacaggg
     3301 ggaagaaccg ctacaacaac gtcctgccct atgatatttc tcgagtcaaa ctttcagtcc
     3361 agacccattc gacagacgac tacatcaatg ccaactatat gcctggctac cattccaaga
     3421 aagatttcat tgccacacaa ggacctttac ccaacacttt gaaagatttt tggcgtatgg
     3481 tttgggagaa aaacgtatat gccattgtta tgctgaccaa atgtgtggag cagggaagga
     3541 ccaaatgtga agagtactgg ccttccaagc aggctcagga ctacggggac ataactgtgg
     3601 caatgacatc agaagttgtt cttccggaat ggaccatcag agattttgtg gtgaaaaata
     3661 tgcagagtag tgagagtcat cctctgcggc agttccattt cacctcctgg cctgaccatg
     3721 gtgttcctga caccaccgac ctgctcatca actttcggta cctggtccgg gattacatga
     3781 agcagatccc ccctgagtca ccaatcctgg tgcattgcag tgctggggtt ggaaggacgg
     3841 gcactttcat tgctattgat cgcctgatct atcagataga gaacgagaac accgtggatg
     3901 tgtatggcat tgtctacgat cttcggatgc acaggcctct gatggtacag acagaggacc
     3961 agtatgtttt cctcaatcag tgtgtgttgg atattatcag agcccagaaa gactcaaaag
     4021 ttgacctcat ctatcagaac acaaccgcaa tgacaatcta tgaaaacctc gagccagtga
     4081 gcatgtttgg aaagactaat ggttacatcg cctagttcca aagcaaaccc ttctgaagct
     4141 aaccagaccg tcacacccac agtgaaggag aacgccctga cggggacatg ttttatgtgt
     4201 ctcatttctc aattctttgt tctgttctgt tagaactact tggagggcat ggggctgtgc
     4261 atgtaaaaca tggcagatag gcagttgggg ctctcagggg ctgtgggcag gtggtgtgta
     4321 aatcagctgc attcctgatt accaatggga tgggttcgct ttctgttttt ctttccttga
     4381 gaattgtgga aaaccaggaa aagtgagcta tgtttttgtt ttccaagcag gtttgttctc
     4441 ctctctttct attcctcccc cttctctctc tccctcccct gcctctctct gttttttttt
     4501 aagactttta tatgattcac atgctaaagc caggattatg ttgggttgga tatattttaa
     4561 gtatcagagg tctattttta cctactgtat ctcggaatct agccgatgga aaagcatggc
     4621 tgtgggtgtt tctcatgcag ggaggggcac ccggtgcctc ttctgcgtgg gtttctattt
     4681 gaacatgtgc cttttctgaa ttatgcttcc acgggcaaaa ctcagtagat atctctattt
     4741 ttatattgaa tctcagaatt ggaatataca gaatatttaa acagtagctt agtatcagag
     4801 gttcgcctcc tcagtaacat tcctgtccca tcccattaga ggaggctttc tctgcggccc
     4861 gcccttgaca cacatttgtg ctccatgttc cttttccttc ctttcttttt ttttttctcc
     4921 cctcccagtt ttcgccaaag aacttctgtt ggtgagattt tcatcccatt ggttgggtga
     4981 gaatagaagt ttaaaatatc accatgagac tctctgtggg tgggagtggg gaggaacaga
     5041 ggaatcaaca taccatggtg tgtgcacccc ttttcatccc atctcctatg ttctctcatt
     5101 tctgtctttg gtaagaagga tttttttaaa ggtgcaatat gtgacgtagt ggttcacgat
     5161 gctctgggtt cttagtaatg ttttactcag gttgtcattt atgtgtgtat gtgtgtgtgt
     5221 gtgtgtgtgt gtgtgtgtgt gtgtgtatgt atgtatgtat gtgtgtttta tagcgtggtg
     5281 atctgtgaac atttcagtgt gaactcagat taaccccttt ccccccaaag tccactggct
     5341 ttagtctctc tgcagtgaca cacatcagta tctactgtat atataaatac taaactctta
     5401 cacaccagtc attcctatga attgaggtgt acaaagtttg atttgtatca aagatgtaat
     5461 tattattttt aaaacctctt tcactacact gctgctgtaa ttactttgaa tttttaaaga
     5521 aaaatgtaga ttttttttgt tttgtttttg gcttcaggtg tgtattcacc aagagtttca
     5581 gaatttatgt ggttttattt tattggtaca taatctgcaa acttctcaag gcattaacat
     5641 gacaagattt gtatctctta tttttatctt gtggctcagg ttatatttga agaagtttca
     5701 agtttatttt ctagtaggca gtgaagtata cataaggtca atgaaggaat caccaggtcc
     5761 ctggagtcct gtggctgttt tccacagtta cacatcctgc tgtatgtttg ggaccatggg
     5821 tattgtgttg aagatgaggg caggggtctt ctccgaggac ctggccactg tgagccctgg
     5881 ggtaacctgt cctctgatgt tctgcactct gttcctcgag tcaccggcac tttgatggct
     5941 gactggacct gatcatgagt gtttgtaggg ttagagaggc tgaaccatga tgtactgaaa
     6001 gccctcgctg tggttcagca ctgtagtgtg cgattcttgc tgtgacccag cgctgctgta
     6061 gcactgttgc tgccgtggct cggcgctggg gcacaacccc tttccctttg cggtactgaa
     6121 aggattgaaa gaagaggtca tggcgctgtc atgctctggg ggagaatttt acttctcaca
     6181 tggaaactgc actttttgct aaatcctttg cattttgatg ttcacttagt gtccagccct
     6241 ttaggatggg ctggccaggg taggttggcc ccctggactc aacttcactg gggaacttga
     6301 cgctgcagtt gtgaatcagg gaagccatgc tgtctccagg tatggggtga agctgaacat
     6361 gggctcatta tttccaaatg ccctgtctgg tctgctcact aggatgtgct gactttgggc
     6421 actatacaga ggggcctgtt ctggcagtag ttctgtgcac cgcctataca cctcagtctg
     6481 tcaggaacgg ttgtagtggg tggtaagggg tccaatccca cgcagcgcct atgccctgcc
     6541 tctgctgcca tggaaagtgc gaggaaagga cccgccccta aaacagccct gtagaagatt
     6601 agagtccctc aaaaaaaaaa aagcaacaga atcatgaaca catcatatac aattgcaaaa
     6661 cacagaaacc ttctccactc ctacctgtat gggtctagaa agtcattagg catcagcccc
     6721 agcaagccat tcccagtccc aagaggaagg ctagtgacag gtctggagtt ccaaatgggc
     6781 aggtcacaag aagctcacca tgccattcta catccggagg aggactgcgt ggtggagttt
     6841 gcatagcaaa gccattggaa agggaaaatt gacaacagag ggtaaggttg ggcagagaga
     6901 gggggaaggt ccttctcact gtttgcccca agccctcagt ggaactgtga atgaaagttg
     6961 gaggagtctg gtgaaatcgg aatgatggaa ctccctgctc agatccgatg gcagcaccga
     7021 gaaaagcagc cagtgtgggg tgtggtcagt gaaagggcta cagactggtg gccaactgct
     7081 ttgaaggact taggccattg actgatgact tctaaggaga aagatttttc caccagagct
     7141 gaatctagca acaattggca ccactgggtg tctgttctct gaggccattt tgccatctcc
     7201 agccagactt tggcacaatg gacctgctgg ctttgtgctt tgtgaagttg gaggctctgg
     7261 ggggtgggag tggggaggag tgggggaggg tcaactatgc agttggttca ttcatacttg
     7321 ttttctggga tggagaagcc tgggtttttt gtttgtttgt ttgttttttt gcaatgcttg
     7381 attgcggctt gttgagctaa acaagcctgg agactgaagc tgattcacct caaaacaaag
     7441 ttggaattct gcattttcca gattgctgtg tagcaactgt gtattcaaca cctgtagctt
     7501 tttctccctg gggcacagaa tagaagttga tgtggactct aaactgtact tttcttgtaa
     7561 ctattttgga atgatgcaca tttctaatgt ctgttgtact tgtacagagt attgatgtag
     7621 gttgcttttt tttttaaagg aaaaatggcc tgaaaaactt tttttaaaga cttacaaata
     7681 ccaaatataa aatatgtcaa caca
//
