LOCUS       XM_039110174            6736 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor
            type, F (Ptprf), transcript variant X20, mRNA.
ACCESSION   XM_039110174
VERSION     XM_039110174.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039110174.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6736
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6736
                     /gene="Ptprf"
                     /gene_synonym="LARFN5C"
                     /note="protein tyrosine phosphatase, receptor type, F;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 113 ESTs, 23 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 39 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:360406"
                     /db_xref="RGD:3453"
     CDS             263..5134
                     /gene="Ptprf"
                     /gene_synonym="LARFN5C"
                     /codon_start=1
                     /product="receptor-type tyrosine-protein phosphatase F
                     isoform X20"
                     /protein_id="XP_038966102.1"
                     /db_xref="GeneID:360406"
                     /db_xref="RGD:3453"
                     /translation="MAPEPAPGRRMVPLVPALVMLGLMAGAHGDSKPVFVKVPEDQIG
                     LSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDE
                     AIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKARTATMLCAAGG
                     NPDPEISWFKDFLPVDPASSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYS
                     APANLYVRVRRVAPRFSIPPSSQEVMPGGNVNLTCVAVGAPMPYVKWMMGAEELTKED
                     EMPVGRNVLELSNVMRSANYTCVAISSLGMIEATAQVTVKALPKPPIDLVVTETTATS
                     VTLTWDSGNTEPVSFYGIQYRAAGTDGPFQEVDGVASTRYSIGGLSPFSEYAFRVLAV
                     NSIGRGPPSEAVRARTGEQAPSSPPRRVQARMLSASTMLVQWEPPEEPNGLVRGYRVY
                     YTPDSRRPLSAWHKHNTDAGLLTTVGSLLPGITYSLRVLAFTAVGDGPPSPTIQVKTQ
                     QGVPAQPADFQAKAESDTRIQLSWLLPPQERIIKYELVYWAAEDEGQQHKVTFDPTSS
                     YTLEDLKPDTLYHFQLAARSDLGVGVFTPTVEARTAQSMPSGPPRKVEVEPLNSTAVH
                     VSWKLPVPNKQHGQIRGYQVTYVRLENGEPRGQPIIQDVMLAEAQWRPEESEDYETTI
                     SGLTPETTYSITVAAYTTKGDGARSKPKVVTTTGAVFAKNFRVAAAMKTSVLLSWEVP
                     DSYKSAVPFKILYNGQSVEVDGHSMRKLIADLQPNTEYSFVLMNRGSSAGGLQHLVSI
                     RTAPDLLPQKPLPASAFIEDGRFSLSMPQVQDPSLVRWFYIVVVPIDRVGGNLLAPRW
                     STPEELELDELLEAIEQGEEKQRRRRRQAERLKPYVAAQVDELPETFTLGDKKNYRGF
                     YNRPLSPDLSYQCFVLASLKEPMDQKRYASSPYSDEIVVQVTPAQQQEEPEMLWVTGP
                     VLAVILIILIVIAILLFKRKRTHSPSSKDEQSIGLKDSLLAHSSDPVEMRRLNYQTPG
                     SSAPSCPNISSMRDHPPIPITDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNS
                     EVNKPKNRYANVIAYDHSRVLLTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPET
                     MGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETYGLIQVTLVDTVELATY
                     TMRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVV
                     HCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEAL
                     LEAAMCGHTEVLARNLYAHIQKLGQVPPGESVTAMELEFKLLANSKAHTSRFISANLP
                     CNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAEST
                     EDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYI
                     LREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPIT
                     VHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRA
                     ALEYLGSFDHYAT"
ORIGIN      
        1 ctccggctcc tgttagggcg gcggtggagg tggcggtggc ggtggcggga gcgggcgacg
       61 gcggcagcgg cggactgaga acggcggcct cagcggcgcg aggcggggac atgcagaccg
      121 acggcccccg gagaggcgga aggagcggag gccctggtgc cctgccctca gtgctgactg
      181 cccagcgaga gtgactggta taaacaagaa gagaccgggt gattgtcttg ggctgtggct
      241 ggctgtggag ctagaaccct ggatggcccc cgagccagcg ccagggagga ggatggtgcc
      301 ccttgtgcct gccctcgtga tgctgggttt gatggcaggt gctcatggcg acagcaaacc
      361 tgtctttgtt aaggtccccg aggaccagat cgggctgtcg ggaggggtgg cctccttcgt
      421 gtgccaagcc acaggggaac ccaagcctcg aatcacatgg atgaagaagg gaaagaaagt
      481 cagctcccag cgctttgagg taattgagtt tgacgacgga gcagggtcag tgctgcggat
      541 ccagccatta cgagtgcagc gagacgaagc catctatgag tgcacggcca cgaacagtct
      601 cggcgagatc aacacaagtg ccaagctgtc agtacttgaa gaggaccagc tgccgtctgg
      661 gttcccgact atcgacatgg gacctcaact gaaggtggtg gagaaggctc gcactgccac
      721 catgctgtgt gcagctggtg gaaatccaga ccctgagatc tcttggttca aagacttcct
      781 tcctgtggac cctgcttcaa gcaacggtcg tatcaagcag ctgcgttcag gtgcattgca
      841 gattgagagc agcgaggagt ctgaccaagg caagtacgag tgtgtggcaa ccaactcggc
      901 aggcacacgc tactcggccc ccgccaacct gtatgtgcga gtgcgccgcg tggctcctcg
      961 tttctccatc cctcccagca gccaagaggt aatgccgggc ggcaacgtga acctcacgtg
     1021 tgtggcagtg ggagcaccca tgccgtatgt gaagtggatg atgggcgccg aggaacttac
     1081 caaagaggac gagatgccag ttggccgcaa tgtgctggag ctcagcaatg tcatgcggtc
     1141 tgccaactat acctgtgtgg ccatctcttc actgggcatg atagaggcca cagcccaggt
     1201 cacagtaaaa gctctgccaa agcctccaat tgatcttgtg gtgacagaga caactgccac
     1261 cagtgttacc ctgacatggg actctggaaa taccgagcct gtgtctttct acggcatcca
     1321 gtaccgtgca gctggcacag atggcccctt ccaggaagtg gatggtgtgg ccagcacccg
     1381 atacagcatt ggtggcctca gccctttttc agaatatgcc ttccgtgtgt tggctgttaa
     1441 cagcattggg cgaggaccac ccagtgaggc agtgcgagcg cgcacgggtg agcaggcacc
     1501 ctccagccct ccacgccgtg tgcaggcccg aatgctgagc gccagcacca tgctggtaca
     1561 gtgggaaccc cctgaagagc ccaatggcct ggtacgggga tatcgagtct actacacccc
     1621 agactctcga cgccccttga gcgcctggca caagcataac accgacgcag gactccttac
     1681 caccgtgggc agcctgctac ctggcatcac ctacagcctc cgcgtcctgg cctttactgc
     1741 cgtgggcgac ggccctccca gccccaccat ccaagtcaag acacagcagg gagtgcctgc
     1801 acagcctgca gacttccagg ccaaagccga gtcggacacc aggatccagc tatcatggct
     1861 gctgcccccg caggagcgga tcatcaagta tgagctggtg tactgggcag cagaggatga
     1921 aggccagcag cacaaggtga ccttcgaccc cacctcctcc tacactctgg aggacctgaa
     1981 gcctgacaca ctgtaccact tccagctggc tgctcgctca gatttggggg tgggcgtctt
     2041 cactcccacc gtagaggccc gtacagcaca gtccatgcct agcgggccac cacggaaggt
     2101 ggaggttgag cctctgaact ccactgctgt gcatgtctcc tggaagctgc ccgtccccaa
     2161 caagcagcac ggacagattc gtggctacca ggtcacctat gtgcggctgg agaatgggga
     2221 gccccgaggc cagcccatca tccaggatgt catgctggct gaggctcagt ggagaccaga
     2281 ggagtccgag gactatgaaa ccaccatcag cggcctcacc cccgagacca cctactccat
     2341 tactgttgct gcctacacca ctaaggggga cggtgcccga agcaagccca aagtggttac
     2401 taccacaggg gcagtgtttg ccaagaattt ccgtgtggcc gctgcaatga agacatctgt
     2461 gctgctcagt tgggaggtcc ccgactctta caagtcagct gtacccttca agatcctgta
     2521 caatgggcag agcgtggagg tggatgggca ctccatgcgg aagctgattg cagacctgca
     2581 acccaacacg gagtactcct tcgtcctgat gaaccgcggc agcagcgctg ggggcctaca
     2641 gcacctggtg tccatccgca ctgccccaga cctcctgcct cagaagccac tgcctgcctc
     2701 tgcctttata gaggatggcc gcttctccct ctccatgcct caagtgcagg acccctcgct
     2761 agtcaggtgg ttctacattg tggtggtgcc cattgaccgt gtgggcggga acctgctggc
     2821 accaagatgg agcacaccag aggagctgga gctggacgag cttctggagg ccatcgagca
     2881 gggtgaggag aaacagcgga ggcgtcggcg ccaagcagag cggctgaagc cttacgtggc
     2941 agctcaagtg gacgagctcc ctgagacctt caccctgggg gacaagaaga actaccgtgg
     3001 cttctacaac cggcccctgt ctccggatct gagttaccag tgctttgtgc tcgcctccct
     3061 caaggaaccc atggaccaga agcgctatgc ctccagcccc tactcggacg agatcgtagt
     3121 ccaggtgaca ccagcccagc agcaggagga gcccgagatg ctgtgggtga caggccctgt
     3181 cctggcagtc attctcatca tactcattgt catcgctatc ctcctattca agaggaagag
     3241 aacacattcc ccatcgtcaa aggatgagca gtcaatcggg ctgaaggact ccctgttggc
     3301 ccactcttct gaccctgtgg aaatgcgaag gcttaactac cagaccccag gttccagtgc
     3361 ccccagttgc ccgaatatct caagtatgcg agaccacccg cccatcccca tcactgacct
     3421 ggcagacaat attgaacgtc tcaaagccaa tgatgggctc aagttctccc aggagtatga
     3481 gtccattgac cctggacagc agttcacgtg ggagaattcc aactcagagg tgaacaagcc
     3541 caagaaccgc tatgcaaacg tcattgccta tgaccactct cgagtcctcc tcacctccat
     3601 tgatggtgtt cctgggagtg actacatcaa tgccaactac attgatggct accgaaagca
     3661 gaatgcctac atcgccacac agggtccgct gcctgagacc atgggtgatt tctggaggat
     3721 ggtgtgggaa cagcgtacag ccacagtggt catgatgacc aggctagagg agaaatcccg
     3781 ggtgaagtgt gatcagtatt ggccagcccg tggcactgag acctatggcc tcattcaggt
     3841 gaccctggtg gacactgtgg agttggccac gtacaccatg cgcaccttcg cactccataa
     3901 gagcggctcc agtgagaagc gtgagctgcg tcagttccag ttcatggcct ggccagacca
     3961 tggggttcct gagtacccca ctcccatctt ggccttcctg agacgggtca aggcctgtaa
     4021 cccgctagat gcaggaccca tggtggtgca ttgcagtgct ggtgtgggcc gcacgggctg
     4081 cttcattgtc atcgacgcaa tgctggagcg tatgaagcac gagaagacag ttgacatcta
     4141 tggccacgtg acgtgcatgc gctcgcaaag gaactacatg gtgcagacag aggaccagta
     4201 tgtgttcatc cacgaggcac tgttagaggc tgccatgtgc ggacacactg aggtgcttgc
     4261 tcgaaacctc tatgcccaca tccagaagct aggccaagtg cctcccgggg agagtgtcac
     4321 tgccatggag cttgagttca agttgctggc caactccaag gcccacacgt ctcgcttcat
     4381 tagtgccaac ctgccctgca acaagttcaa gaaccgcctg gtgaacatca tgccctatga
     4441 gctgactcga gtgtgcctgc aacccatccg tggtgtggag ggctctgact acatcaatgc
     4501 cagctttcta gatggctaca gacagcagaa ggcctacata gctacacagg ggcctctggc
     4561 cgagagcacc gaggacttct ggcgcatgtt atgggagcac aattccacca tcatcgtcat
     4621 gctgacgaag cttcgggaga tgggcaggga gaaatgtcac cagtactggc cagcagagcg
     4681 ctctgctcgc tatcaatact ttgtcgttga cccgatggct gagtacaaca tgccccagta
     4741 tatcctgcgt gaattcaaag tcacagatgc ccgggatggg cagtcaagga caatccgaca
     4801 gttccagttt acagactggc cagagcaagg agtacccaag acgggggaag gcttcatcga
     4861 cttcatcggg caggtgcaca agacaaagga gcagtttgga caggatgggc ccatcacagt
     4921 acactgcagt gctggtgtgg gccgcacagg ggtgtttatc accctgagca ttgtcctgga
     4981 gcgcatgcgg tacgagggcg tggttgacat gttccagacc gtgaagaccc tccgcacaca
     5041 gcgccctgca atggtgcaga cagaggacca ataccagctg tgctaccgtg cggccctgga
     5101 atacctcggc agctttgatc actatgcaac gtaactactg ctcccctctc ctccgccgct
     5161 cccctgaggg gctccggagg ggacccagct cctctgagcc ataccgacca tcgtccagcc
     5221 ctcctgcacg gatgctgttg ccggcagagc acagcccact gggatcacag catttcggga
     5281 acattgccac accagtcaga gagcccagaa cacctgggca agtaggcgga ctggcagcct
     5341 ggctctgggc cctcgtccac cgggcccaag tggagccctg cttcaagctc tctgttcagc
     5401 tccgcgattc tcatgcttct catggggtgg gaaagggggc agagcccccc acgttttata
     5461 catttaggcg gggtagactg cggggtccta gcctcttcct ccgactttcc ttttgcaggt
     5521 ctttcactac agattgggct gctgtgggag ttgggactta cttgttttcc tttttgagtt
     5581 cacgttggat ccttgtacaa cttctgcgga aggacacagt acacgctttc cttcctcgag
     5641 cagagctagg gccctacctg agcaagtcgg ctgtggcccg ggaggcagct gagactcctg
     5701 ctgtcctcca gcctttcaga ggagatccta ttccagccaa atgcagggaa acactttatt
     5761 ttgttttagg ttttgttttt ccttgagagc ctttttttag gccccacaga cagtggtggg
     5821 cggggaggcg ataggaaaca catccccagt gtgcatttaa cattcatagc ctacaaccac
     5881 agacgtgtct ggggggagcc tggcaaggcg ttcctcgtca ccatcgtgtt tgcaaaggtt
     5941 caaaaaagca aaaattaaaa aaaaaaaaca taaaaatatt tttttttaaa aaaaagaaat
     6001 aaagattcat cccctggcct ctccttctgc tccgaagtgg gaggcaactc aatgtgcctg
     6061 gggctcgttg tgggcccaca gagtcttgct gtcatcccca gcggtgcagt gtggcaggtg
     6121 tttgtaagct gtgggttctg gccacctcgg taactgaatg gcacaggtga gggcctgtgc
     6181 cacgccccac acacctcagg gccaagcggg ggcgtggccg gcccttcagg tctaggccag
     6241 tgggcctggt agcacatgtc tgtcctcagc gggacagatg ctttctctcc tggtttgcag
     6301 ctgtcttcaa atcccccatg actcgccctt cccactcctt caagtcgccc tcacaaacca
     6361 atgtggcaag actactggac ttgtatccat ggtactctac tcagtcctct tatctcagct
     6421 tgctgagggg cagggagagg gtctcttcct ctgggcagca ctatctaggt agtaagtggg
     6481 ggcgggaaag ggtgcatagc tgttttagcc gaaggactcg atgtggacgt cctcagatat
     6541 agctaggcta agcggagatc gacggtccgg ggttggtggt gttggatgag acattcattt
     6601 ttaccttgtg gacgctagtg ctgtagagtt cactgttgta cacagtctgt tttctatttg
     6661 ttaaggaaaa ctacagcatc attgcatact tcttgatggt aataaatttg aataatcaga
     6721 tttcttacac accggg
//
