LOCUS       XM_039110171            6766 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor
            type, F (Ptprf), transcript variant X18, mRNA.
ACCESSION   XM_039110171
VERSION     XM_039110171.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6766
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6766
                     /gene="Ptprf"
                     /gene_synonym="LARFN5C"
                     /note="protein tyrosine phosphatase, receptor type, F;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 110 ESTs, 21 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 32 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:360406"
                     /db_xref="RGD:3453"
     CDS             263..5164
                     /gene="Ptprf"
                     /gene_synonym="LARFN5C"
                     /codon_start=1
                     /product="receptor-type tyrosine-protein phosphatase F
                     isoform X18"
                     /protein_id="XP_038966099.1"
                     /db_xref="GeneID:360406"
                     /db_xref="RGD:3453"
                     /translation="MAPEPAPGRRMVPLVPALVMLGLMAGAHGDSKPVFVKVPEDQIG
                     LSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDE
                     AIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKARTATMLCAAGG
                     NPDPEISWFKDFLPVDPASSNGRIKQLRSGGSPIRGALQIESSEESDQGKYECVATNS
                     AGTRYSAPANLYVRDQREVRRVAPRFSIPPSSQEVMPGGNVNLTCVAVGAPMPYVKWM
                     MGAEELTKEDEMPVGRNVLELSNVMRSANYTCVAISSLGMIEATAQVTVKALPKPPID
                     LVVTETTATSVTLTWDSGNTEPVSFYGIQYRAAGTDGPFQEVDGVASTRYSIGGLSPF
                     SEYAFRVLAVNSIGRGPPSEAVRARTGEQAPSSPPRRVQARMLSASTMLVQWEPPEEP
                     NGLVRGYRVYYTPDSRRPLSAWHKHNTDAGLLTTVGSLLPGITYSLRVLAFTAVGDGP
                     PSPTIQVKTQQGVPAQPADFQAKAESDTRIQLSWLLPPQERIIKYELVYWAAEDEGQQ
                     HKVTFDPTSSYTLEDLKPDTLYHFQLAARSDLGVGVFTPTVEARTAQSMPSGPPRKVE
                     VEPLNSTAVHVSWKLPVPNKQHGQIRGYQVTYVRLENGEPRGQPIIQDVMLAEAQWRP
                     EESEDYETTISGLTPETTYSITVAAYTTKGDGARSKPKVVTTTGAVFAKNFRVAAAMK
                     TSVLLSWEVPDSYKSAVPFKILYNGQSVEVDGHSMRKLIADLQPNTEYSFVLMNRGSS
                     AGGLQHLVSIRTAPDLLPQKPLPASAFIEDGRFSLSMPQVQDPSLVRWFYIVVVPIDR
                     VGGNLLAPRWSTPEELELDELLEAIEQGEEKQRRRRRQAERLKPYVAAQVDELPETFT
                     LGDKKNYRGFYNRPLSPDLSYQCFVLASLKEPMDQKRYASSPYSDEIVVQVTPAQQQE
                     EPEMLWVTGPVLAVILIILIVIAILLFKRKRTHSPSSKDEQSIGLKDSLLAHSSDPVE
                     MRRLNYQTPGSSAPSCPNISSMRDHPPIPITDLADNIERLKANDGLKFSQEYESIDPG
                     QQFTWENSNSEVNKPKNRYANVIAYDHSRVLLTSIDGVPGSDYINANYIDGYRKQNAY
                     IATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETYGLIQVT
                     LVDTVELATYTMRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKAC
                     NPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTE
                     DQYVFIHEALLEAAMCGHTEVLARNLYAHIQKLGQVPPGESVTAMELEFKLLANSKAH
                     TSRFISANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYI
                     ATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDP
                     MAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTK
                     EQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQT
                     EDQYQLCYRAALEYLGSFDHYAT"
ORIGIN      
        1 ctccggctcc tgttagggcg gcggtggagg tggcggtggc ggtggcggga gcgggcgacg
       61 gcggcagcgg cggactgaga acggcggcct cagcggcgcg aggcggggac atgcagaccg
      121 acggcccccg gagaggcgga aggagcggag gccctggtgc cctgccctca gtgctgactg
      181 cccagcgaga gtgactggta taaacaagaa gagaccgggt gattgtcttg ggctgtggct
      241 ggctgtggag ctagaaccct ggatggcccc cgagccagcg ccagggagga ggatggtgcc
      301 ccttgtgcct gccctcgtga tgctgggttt gatggcaggt gctcatggcg acagcaaacc
      361 tgtctttgtt aaggtccccg aggaccagat cgggctgtcg ggaggggtgg cctccttcgt
      421 gtgccaagcc acaggggaac ccaagcctcg aatcacatgg atgaagaagg gaaagaaagt
      481 cagctcccag cgctttgagg taattgagtt tgacgacgga gcagggtcag tgctgcggat
      541 ccagccatta cgagtgcagc gagacgaagc catctatgag tgcacggcca cgaacagtct
      601 cggcgagatc aacacaagtg ccaagctgtc agtacttgaa gaggaccagc tgccgtctgg
      661 gttcccgact atcgacatgg gacctcaact gaaggtggtg gagaaggctc gcactgccac
      721 catgctgtgt gcagctggtg gaaatccaga ccctgagatc tcttggttca aagacttcct
      781 tcctgtggac cctgcttcaa gcaacggtcg tatcaagcag ctgcgttcag gtggttcacc
      841 aatcagaggt gcattgcaga ttgagagcag cgaggagtct gaccaaggca agtacgagtg
      901 tgtggcaacc aactcggcag gcacacgcta ctcggccccc gccaacctgt atgtgcgaga
      961 tcagcgagaa gtgcgccgcg tggctcctcg tttctccatc cctcccagca gccaagaggt
     1021 aatgccgggc ggcaacgtga acctcacgtg tgtggcagtg ggagcaccca tgccgtatgt
     1081 gaagtggatg atgggcgccg aggaacttac caaagaggac gagatgccag ttggccgcaa
     1141 tgtgctggag ctcagcaatg tcatgcggtc tgccaactat acctgtgtgg ccatctcttc
     1201 actgggcatg atagaggcca cagcccaggt cacagtaaaa gctctgccaa agcctccaat
     1261 tgatcttgtg gtgacagaga caactgccac cagtgttacc ctgacatggg actctggaaa
     1321 taccgagcct gtgtctttct acggcatcca gtaccgtgca gctggcacag atggcccctt
     1381 ccaggaagtg gatggtgtgg ccagcacccg atacagcatt ggtggcctca gccctttttc
     1441 agaatatgcc ttccgtgtgt tggctgttaa cagcattggg cgaggaccac ccagtgaggc
     1501 agtgcgagcg cgcacgggtg agcaggcacc ctccagccct ccacgccgtg tgcaggcccg
     1561 aatgctgagc gccagcacca tgctggtaca gtgggaaccc cctgaagagc ccaatggcct
     1621 ggtacgggga tatcgagtct actacacccc agactctcga cgccccttga gcgcctggca
     1681 caagcataac accgacgcag gactccttac caccgtgggc agcctgctac ctggcatcac
     1741 ctacagcctc cgcgtcctgg cctttactgc cgtgggcgac ggccctccca gccccaccat
     1801 ccaagtcaag acacagcagg gagtgcctgc acagcctgca gacttccagg ccaaagccga
     1861 gtcggacacc aggatccagc tatcatggct gctgcccccg caggagcgga tcatcaagta
     1921 tgagctggtg tactgggcag cagaggatga aggccagcag cacaaggtga ccttcgaccc
     1981 cacctcctcc tacactctgg aggacctgaa gcctgacaca ctgtaccact tccagctggc
     2041 tgctcgctca gatttggggg tgggcgtctt cactcccacc gtagaggccc gtacagcaca
     2101 gtccatgcct agcgggccac cacggaaggt ggaggttgag cctctgaact ccactgctgt
     2161 gcatgtctcc tggaagctgc ccgtccccaa caagcagcac ggacagattc gtggctacca
     2221 ggtcacctat gtgcggctgg agaatgggga gccccgaggc cagcccatca tccaggatgt
     2281 catgctggct gaggctcagt ggagaccaga ggagtccgag gactatgaaa ccaccatcag
     2341 cggcctcacc cccgagacca cctactccat tactgttgct gcctacacca ctaaggggga
     2401 cggtgcccga agcaagccca aagtggttac taccacaggg gcagtgtttg ccaagaattt
     2461 ccgtgtggcc gctgcaatga agacatctgt gctgctcagt tgggaggtcc ccgactctta
     2521 caagtcagct gtacccttca agatcctgta caatgggcag agcgtggagg tggatgggca
     2581 ctccatgcgg aagctgattg cagacctgca acccaacacg gagtactcct tcgtcctgat
     2641 gaaccgcggc agcagcgctg ggggcctaca gcacctggtg tccatccgca ctgccccaga
     2701 cctcctgcct cagaagccac tgcctgcctc tgcctttata gaggatggcc gcttctccct
     2761 ctccatgcct caagtgcagg acccctcgct agtcaggtgg ttctacattg tggtggtgcc
     2821 cattgaccgt gtgggcggga acctgctggc accaagatgg agcacaccag aggagctgga
     2881 gctggacgag cttctggagg ccatcgagca gggtgaggag aaacagcgga ggcgtcggcg
     2941 ccaagcagag cggctgaagc cttacgtggc agctcaagtg gacgagctcc ctgagacctt
     3001 caccctgggg gacaagaaga actaccgtgg cttctacaac cggcccctgt ctccggatct
     3061 gagttaccag tgctttgtgc tcgcctccct caaggaaccc atggaccaga agcgctatgc
     3121 ctccagcccc tactcggacg agatcgtagt ccaggtgaca ccagcccagc agcaggagga
     3181 gcccgagatg ctgtgggtga caggccctgt cctggcagtc attctcatca tactcattgt
     3241 catcgctatc ctcctattca agaggaagag aacacattcc ccatcgtcaa aggatgagca
     3301 gtcaatcggg ctgaaggact ccctgttggc ccactcttct gaccctgtgg aaatgcgaag
     3361 gcttaactac cagaccccag gttccagtgc ccccagttgc ccgaatatct caagtatgcg
     3421 agaccacccg cccatcccca tcactgacct ggcagacaat attgaacgtc tcaaagccaa
     3481 tgatgggctc aagttctccc aggagtatga gtccattgac cctggacagc agttcacgtg
     3541 ggagaattcc aactcagagg tgaacaagcc caagaaccgc tatgcaaacg tcattgccta
     3601 tgaccactct cgagtcctcc tcacctccat tgatggtgtt cctgggagtg actacatcaa
     3661 tgccaactac attgatggct accgaaagca gaatgcctac atcgccacac agggtccgct
     3721 gcctgagacc atgggtgatt tctggaggat ggtgtgggaa cagcgtacag ccacagtggt
     3781 catgatgacc aggctagagg agaaatcccg ggtgaagtgt gatcagtatt ggccagcccg
     3841 tggcactgag acctatggcc tcattcaggt gaccctggtg gacactgtgg agttggccac
     3901 gtacaccatg cgcaccttcg cactccataa gagcggctcc agtgagaagc gtgagctgcg
     3961 tcagttccag ttcatggcct ggccagacca tggggttcct gagtacccca ctcccatctt
     4021 ggccttcctg agacgggtca aggcctgtaa cccgctagat gcaggaccca tggtggtgca
     4081 ttgcagtgct ggtgtgggcc gcacgggctg cttcattgtc atcgacgcaa tgctggagcg
     4141 tatgaagcac gagaagacag ttgacatcta tggccacgtg acgtgcatgc gctcgcaaag
     4201 gaactacatg gtgcagacag aggaccagta tgtgttcatc cacgaggcac tgttagaggc
     4261 tgccatgtgc ggacacactg aggtgcttgc tcgaaacctc tatgcccaca tccagaagct
     4321 aggccaagtg cctcccgggg agagtgtcac tgccatggag cttgagttca agttgctggc
     4381 caactccaag gcccacacgt ctcgcttcat tagtgccaac ctgccctgca acaagttcaa
     4441 gaaccgcctg gtgaacatca tgccctatga gctgactcga gtgtgcctgc aacccatccg
     4501 tggtgtggag ggctctgact acatcaatgc cagctttcta gatggctaca gacagcagaa
     4561 ggcctacata gctacacagg ggcctctggc cgagagcacc gaggacttct ggcgcatgtt
     4621 atgggagcac aattccacca tcatcgtcat gctgacgaag cttcgggaga tgggcaggga
     4681 gaaatgtcac cagtactggc cagcagagcg ctctgctcgc tatcaatact ttgtcgttga
     4741 cccgatggct gagtacaaca tgccccagta tatcctgcgt gaattcaaag tcacagatgc
     4801 ccgggatggg cagtcaagga caatccgaca gttccagttt acagactggc cagagcaagg
     4861 agtacccaag acgggggaag gcttcatcga cttcatcggg caggtgcaca agacaaagga
     4921 gcagtttgga caggatgggc ccatcacagt acactgcagt gctggtgtgg gccgcacagg
     4981 ggtgtttatc accctgagca ttgtcctgga gcgcatgcgg tacgagggcg tggttgacat
     5041 gttccagacc gtgaagaccc tccgcacaca gcgccctgca atggtgcaga cagaggacca
     5101 ataccagctg tgctaccgtg cggccctgga atacctcggc agctttgatc actatgcaac
     5161 gtaactactg ctcccctctc ctccgccgct cccctgaggg gctccggagg ggacccagct
     5221 cctctgagcc ataccgacca tcgtccagcc ctcctgcacg gatgctgttg ccggcagagc
     5281 acagcccact gggatcacag catttcggga acattgccac accagtcaga gagcccagaa
     5341 cacctgggca agtaggcgga ctggcagcct ggctctgggc cctcgtccac cgggcccaag
     5401 tggagccctg cttcaagctc tctgttcagc tccgcgattc tcatgcttct catggggtgg
     5461 gaaagggggc agagcccccc acgttttata catttaggcg gggtagactg cggggtccta
     5521 gcctcttcct ccgactttcc ttttgcaggt ctttcactac agattgggct gctgtgggag
     5581 ttgggactta cttgttttcc tttttgagtt cacgttggat ccttgtacaa cttctgcgga
     5641 aggacacagt acacgctttc cttcctcgag cagagctagg gccctacctg agcaagtcgg
     5701 ctgtggcccg ggaggcagct gagactcctg ctgtcctcca gcctttcaga ggagatccta
     5761 ttccagccaa atgcagggaa acactttatt ttgttttagg ttttgttttt ccttgagagc
     5821 ctttttttag gccccacaga cagtggtggg cggggaggcg ataggaaaca catccccagt
     5881 gtgcatttaa cattcatagc ctacaaccac agacgtgtct ggggggagcc tggcaaggcg
     5941 ttcctcgtca ccatcgtgtt tgcaaaggtt caaaaaagca aaaattaaaa aaaaaaaaca
     6001 taaaaatatt tttttttaaa aaaaagaaat aaagattcat cccctggcct ctccttctgc
     6061 tccgaagtgg gaggcaactc aatgtgcctg gggctcgttg tgggcccaca gagtcttgct
     6121 gtcatcccca gcggtgcagt gtggcaggtg tttgtaagct gtgggttctg gccacctcgg
     6181 taactgaatg gcacaggtga gggcctgtgc cacgccccac acacctcagg gccaagcggg
     6241 ggcgtggccg gcccttcagg tctaggccag tgggcctggt agcacatgtc tgtcctcagc
     6301 gggacagatg ctttctctcc tggtttgcag ctgtcttcaa atcccccatg actcgccctt
     6361 cccactcctt caagtcgccc tcacaaacca atgtggcaag actactggac ttgtatccat
     6421 ggtactctac tcagtcctct tatctcagct tgctgagggg cagggagagg gtctcttcct
     6481 ctgggcagca ctatctaggt agtaagtggg ggcgggaaag ggtgcatagc tgttttagcc
     6541 gaaggactcg atgtggacgt cctcagatat agctaggcta agcggagatc gacggtccgg
     6601 ggttggtggt gttggatgag acattcattt ttaccttgtg gacgctagtg ctgtagagtt
     6661 cactgttgta cacagtctgt tttctatttg ttaaggaaaa ctacagcatc attgcatact
     6721 tcttgatggt aataaatttg aataatcaga tttcttacac accggg
//
