LOCUS       XM_039109698            2846 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus protein tyrosine phosphatase,
            non-receptor type 5 (Ptpn5), transcript variant X6, mRNA.
ACCESSION   XM_039109698
VERSION     XM_039109698.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2846
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2846
                     /gene="Ptpn5"
                     /gene_synonym="STEP"
                     /note="protein tyrosine phosphatase, non-receptor type 5;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 16 ESTs, 23 long SRA reads, 22
                     Proteins"
                     /db_xref="GeneID:29644"
                     /db_xref="RGD:3448"
     CDS             92..1873
                     /gene="Ptpn5"
                     /gene_synonym="STEP"
                     /codon_start=1
                     /product="tyrosine-protein phosphatase non-receptor type 5
                     isoform X2"
                     /protein_id="XP_038965626.1"
                     /db_xref="GeneID:29644"
                     /db_xref="RGD:3448"
                     /translation="MKFEGIRSEKESQAADDSKGGTLDMCCSKRLLGWQHGPPVGDQI
                     PGQDKLLSKKRSTEDSKGLPQPVEMGGLDEGEGLPSKQRELPPPPPSPPSEPAQKLPP
                     QGAGSHSLTVRSSLCLFAASQLLLACGVLWLSGHGHSWLQTTTDLIFSSLTVLNHLGP
                     AAWLGSGTWGTPSLLLVSLTVSLGIITTLVWHLLKTPPEPPVPLPPEDRRQSVSRQPS
                     FTYSEWMEEKVEDDFLDLDAVPETPVFDCVMDIKPEADPTSLTVKSMGLQERRGSNVS
                     LTLDMCTPGCNEEGFGYLVSPREESAHEYLLSASRVLRAEELHEKALDPFLLQAEFFE
                     IPMNFVDPKEYDIPGLVRKNRYKTILPNPHSRVRLTSPDPEDPLSSYINANYIRGYNG
                     EEKVYIATQGPIVSTVADFWRMVWQERTPIIVMITNIEEMNEKCTEYWPEEQVVHDGV
                     EITVQKVIHTEDYRLRLISLRRGTEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEE
                     AAQQEGPHCSPIIVHCSAGIGRTGCFIATSICCQQLRREGVVDILKTTCQLRQDRGGM
                     IQTCEQYQFVHHAMSLYEKQLSLQSSE"
     polyA_site      2846
                     /gene="Ptpn5"
                     /gene_synonym="STEP"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 attcacgtga gtaggccagt ttgctttttg ctgaggaaaa ctcccagtcc tggccccaga
       61 tggcaccttt ccccacctgg ataccttggg aatgaagttt gagggaatta ggagtgagaa
      121 agagagccag gctgctgatg actccaaggg agggaccctg gacatgtgct gtagtaagag
      181 gctgttgggg tggcagcatg gcccaccagt tggagatcag atccctggtc aagataaact
      241 actttcgaag aaaaggagta cagaagacag caaaggtctg ccccagccag tagagatggg
      301 aggtctggac gagggcgaag gactccccag caagcagaga gagctgccac ccccgccacc
      361 ctcaccgccc tctgagccag ctcagaagct gccacctcaa ggtgccggga gccactccct
      421 cacagtcaga agcagcctgt gcctgtttgc tgcctctcag ttactgcttg cctgtggggt
      481 gctctggctc agtggccatg gccactcctg gctgcagacc accacagacc tcatcttctc
      541 ctcgctcacc gtgttgaacc acctgggacc tgcagcctgg ctaggttctg ggacctgggg
      601 gacaccaagt ctgctgttag tctctctgac tgtgagcctg ggcatcatca ccaccctggt
      661 gtggcacctt ctcaagacac ccccagagcc acctgtccca ctgcccccag aggacagacg
      721 acaatcagtg agccggcagc cctccttcac ttactcagag tggatggagg agaaggtaga
      781 ggatgacttt ctggacctgg acgcagtgcc ggagacaccc gtgtttgact gtgtgatgga
      841 catcaagcct gaggctgatc ccacctcgtt gactgtcaag tccatgggtc tgcaggagag
      901 gaggggctcc aatgtctcct tgaccctgga catgtgtact cctggctgca atgaggaggg
      961 ctttggctac ctggtgtccc cacgagagga gtcagcccat gaatacctgc tcagtgcctc
     1021 ccgtgtcctc cgggcagagg agctgcacga aaaggccctg gaccctttct tgctgcaggc
     1081 ggaattcttt gaaatcccca tgaactttgt ggatccaaaa gaatatgaca tcccagggct
     1141 ggtacggaag aatcggtaca aaaccatcct tcccaatcct cacagcaggg tacgtctgac
     1201 gtcaccagac cctgaagatc ctctgagttc ctacatcaat gccaactaca tccggggcta
     1261 caatggggag gagaaggtgt acatcgccac ccagggaccc atcgtcagca ctgtggccga
     1321 cttctggcgc atggtgtggc aggagcgcac acccatcatc gtcatgatca ccaacatcga
     1381 ggagatgaac gagaagtgca cggaatattg gccagaagag caggtcgtcc acgatggcgt
     1441 agagatcact gtgcagaaag tcatccacac agaggactac cggctgcgac ttatctccct
     1501 caggagaggg actgaagaga gaggcttgaa gcattactgg ttcacatcct ggcctgacca
     1561 gaagaccccc gaccgggcac ccccactcct gcacctggta cgggaggtgg aggaggcagc
     1621 ccagcaagag ggaccccact gttccccgat cattgttcac tgcagtgcag ggattgggag
     1681 aaccgggtgc ttcatcgcca ccagcatctg ctgccagcag ctgcgacgtg agggcgtggt
     1741 agacatccta aagaccacgt gccagctccg tcaggacagg ggcggcatga tccaaacatg
     1801 cgaacagtat cagtttgtgc accacgccat gagcctctat gagaagcagc tatccctcca
     1861 gtcctcagag tgaccacact cttcctctga gatccactgg gcactgccga gtctgaggct
     1921 ggggcttcac cccaactacc caaggtctta ccttgggtcc tgggcctgtt ccctggctct
     1981 ccccttcagt ctgcccccat ctgttgtcct ggcctggtcc ctaccccaag cctagctctt
     2041 ctactgtaca tactgcagag ttcgggaggg caggggagga atgtgccagg ccaggcctgg
     2101 ggcccctggg cctgacccac actatataga cctggggcct cagttttaac catgattcca
     2161 cagctacttg gtccaaaatg ttttcatgcc acaccccaag tgtcctacca caacatgttc
     2221 tgtctgtcca tccatcacag ctatctgtac caaacactgt gtcccctcag ccaggaaagg
     2281 agtactgatc tgagctctca cccctcagcc ctcacccaca tcgctattcc cagacaccca
     2341 ccctgctccc caggcagaga tgtctaccaa tctctggcct cacaggatgt ggatggtgga
     2401 gaccaggcag aggagaatgt ggtggttgac cgagatccca gctgagaagg ttcccgggca
     2461 agggtgggca tctctggcct atgagacact ggagagaaag aggacagata tagtgggaaa
     2521 ccctaaggat ctgagccctg agggggccct ccaagagtag ggtggggaca gctccagacc
     2581 tgcgaggcat ctttctgtgt cactatggga aaccccaaat gtctcctcgc tacatgttgc
     2641 tccgtgtgtt cccttgtcca tgtgtgtgtt gagagcccat gagcagggca tgcatgactc
     2701 tttggcaaca tgtgttatct tggagccacg tgtttttatc gctgacttta aatatttatt
     2761 ccacggcata cagagacatt tggtgtcttt ttataatctg ctcgtggtca ttgaatagag
     2821 caataaacag agcattttga gcaaaa
//
