LOCUS       XM_039090325            3747 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protein tyrosine phosphatase,
            non-receptor type 4 (Ptpn4), transcript variant X4, mRNA.
ACCESSION   XM_039090325
VERSION     XM_039090325.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090325.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3747
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3747
                     /gene="Ptpn4"
                     /note="protein tyrosine phosphatase, non-receptor type 4;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 7 ESTs, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 18 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:246116"
                     /db_xref="RGD:620712"
     CDS             636..3374
                     /gene="Ptpn4"
                     /codon_start=1
                     /product="tyrosine-protein phosphatase non-receptor type 4
                     isoform X3"
                     /protein_id="XP_038946253.1"
                     /db_xref="GeneID:246116"
                     /db_xref="RGD:620712"
                     /translation="MTARFRLPAGRTYNVRASELARDRQHTEVVCNILLLDNTVQAFR
                     VNKHDQGQVLLDIVFKHLDLTERDYFGLQLADDSTDNPRWLDPNKPIRKQLKKLFLLI
                     LGGSPYNLNFRVKFFVSDPNKLQEEYTRYQYFLQIKQDILTGRLSCPCNTAALLASFA
                     VQSELGDYNQSENLAGYLSDYSFIPNQPQDFEKEIAKLHQQHIGLSPAEAEFNYLNTA
                     RTLELYGVEFHYARDQSNNEILIGVMSGGILIYKNRVRMNTFLWLKIVKISFKCKQFF
                     IQLRKELHESRETLLGFNMVNYRACKTLWKACVEHHTFFRLDRPLPPQKNFFAHYFTL
                     GSKFRYCGRTEVQSVQYGKEKANKDRVFARSPSKPLARKLMDWEVVSRNSLSDDRLET
                     QSLPSRSPPGTPNHRNSSFTQEGTRVRPSSVGHLVDHVVHTSPSEDFVSQRSPSSTQA
                     NSIVLESSPSQETPEDGQPPALPPKQSKKNSWNQIHFSHSQQDLVNHTNESFDVPSSP
                     EKSTPNGGIPHDNLVLIKMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPR
                     LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELVLLVRPNAVYDVVEEKLESE
                     PDFQYIPEKAPLDSVHQDDHSLRESMIQLAEGLITGTVLAQFDQLYRKKPGMTMSCAK
                     LPQNISKNRYRDISPYDATRVLLKGNEDYINANYINMEISSSSIINQYIACQGPLPHT
                     CKDFWQMTWEQGSSMVVMLTTQVERGRVKCHQYWPEPSGSSSYGCYQVTCHSEEGNPA
                     YIFRKMTLFNQEKNESRQLTQIQYTAWPDHGVPDDSSDFLDFVCHVRNKRAGKEEPII
                     VHCSAGIGRTGVLITMETAMCLIECNQPVYPLDIVRTMRDQRAMMIQTPQVLPVLF"
ORIGIN      
        1 tgcgcagccg ccatgttcgg ttgctatgct gcggcctcgg agacgggggg tgcttgagag
       61 aggaggagga gacggaggag gcggtggagg cgagggagga ggaggaagga gaggaggagg
      121 agaaggagga ggagggtgac cgaggttctc ctttgcactc tcacacagag ccgcctccct
      181 ggagtcaccc gccgcctctc gccgcgcgcg cttccctgct ccgcggacgc gacattgttc
      241 ttgaagactc ccgggacctg tcagaaatcg gggctccggg acttgaaaga gacttgactt
      301 cggctcgcgg gttgcgggga ccgcggtact ttcggggcgc gtgtgagggg attagctcat
      361 ctcgccgcga ggtgcgagcg cgtgcctccc cgcgcacgct ggccccgccg cagccccgca
      421 ggatgacggg gtgcaggcgg cccgcggccg tggcgcggcc gctgtggcgg cggctgttcg
      481 cggggcgctg agggcgagca cccggacgcg gaccacgcgc ccctttcccc cggccacgag
      541 cccggggcct cctggctttt tgtatttgga ttttgttttt ctttccccag ccgagaggac
      601 gcggctgtga caacgaaggt tttgtgcgga cagtaatgac cgcacgtttc cgattgcctg
      661 ctggcagaac ctacaatgtc cgagcatcag agttggcccg agacagacag catacagagg
      721 tggtttgcaa cattcttctt ctggataaca ctgtacaggc attcagagtt aataaacatg
      781 atcaggggca agttctgttg gatatagtct tcaagcatct tgatctgact gagcgagact
      841 attttggttt acagttggct gatgattcca cagataaccc aaggtggctg gatccaaaca
      901 aaccaataag gaagcagcta aagaagctgt ttttgttaat tctaggagga tcaccttaca
      961 atttgaactt tagagtcaaa ttctttgtaa gtgaccccaa caagttacaa gaagaatata
     1021 caaggtatca gtattttttg caaattaagc aagacattct tactggaaga ttatcctgtc
     1081 cttgtaacac tgctgctctt ttagcttcat tcgctgttca gtctgaactt ggagactaca
     1141 atcagtcaga aaacttggca ggctacctct cagattattc tttcattcct aatcaacctc
     1201 aagatttcga gaaagaaatt gcaaagttac atcagcagca tattggctta tctcctgcag
     1261 aagcagaatt taattaccta aacacagcac gtaccctgga actctatgga gttgaatttc
     1321 actatgcaag ggatcaaagt aacaatgaaa tcctgattgg agtgatgtca ggaggaattc
     1381 tgatttacaa gaacagggta cggatgaata cttttctgtg gttgaagatt gtaaaaattt
     1441 cttttaaatg caaacaattt tttattcaac ttcgaaaaga attgcatgaa tctagagaaa
     1501 cattacttgg atttaatatg gtgaattata gagcgtgtaa aactttgtgg aaagcgtgtg
     1561 tagaacatca cacattcttc cgcctggata gaccacttcc acctcaaaag aacttttttg
     1621 cacattattt tacattgggt tccaaattcc ggtactgtgg gagaactgaa gtccagtcag
     1681 ttcagtatgg caaagaaaag gcaaataaag acagggtatt tgcaagatct ccaagtaagc
     1741 ctttggcccg gaaattaatg gattgggaag tagtcagcag aaattcgtta tctgatgaca
     1801 ggttagaaac acaaagtctc ccatcccggt ctccacctgg aactcccaac catcgaaatt
     1861 cttcattcac acaagagggg acccgggttc ggccgtcttc agttggtcat ttggtagacc
     1921 atgtggttca tacatccccc agtgaggatt ttgtaagtca gagatctcca tcatcaacgc
     1981 aagctaatag catagttctg gaatcatcac catcacaaga gacccctgaa gatgggcagc
     2041 ctccagcttt accacccaaa caatctaaga aaaacagttg gaaccaaatt catttttcac
     2101 attctcagca agatctagtc aaccatacta atgaatcctt tgatgtgccc tcttcccctg
     2161 aaaagtccac tcctaatggt ggcattccac atgataacct tgttctaatc aaaatgaaac
     2221 ctgatgagaa tggaaggttt ggattcaatg taaagggagg gtatgatcag aagatgcctg
     2281 taattgtgtc ccgggtagca ccaggaacac ctgctgacct ctgtgtccct cggttgaatg
     2341 aaggggacca agtggtactc ataaatggcc gggatattgc agaacacacc catgatcaag
     2401 tagtcttatt tattaaagct agctgtgaga gacattctgg ggaacttgtg ctcctagttc
     2461 gacctaatgc tgtatatgac gtagtggaag aaaaactaga aagtgagcca gacttccagt
     2521 atattcctga aaaagcccct ctagatagtg tccatcaaga tgaccattcc ctgcgggagt
     2581 cgatgatcca gctagctgag gggcttatca ctggaacagt actggcacag tttgatcaac
     2641 tgtatcggaa aaaacctgga atgacaatgt cttgtgccaa attacctcag aacatttcca
     2701 aaaacagata cagagatatt tcaccttatg acgctacacg ggtcctttta aaaggtaatg
     2761 aagactacat caatgcaaac tatataaata tggaaatttc ttcttcgagt attataaatc
     2821 aatacattgc ttgtcaaggg ccattaccac atacttgtaa agatttttgg caaatgactt
     2881 gggaacaagg ctcctccatg gttgtgatgt tgaccacaca agttgaacgt ggcagagtta
     2941 aatgtcacca gtattggcca gaaccctcag gaagctcatc ctatggatgc tatcaagtca
     3001 cctgccactc tgaagaagga aatcctgcgt atatcttcag gaaaatgaca ctgtttaacc
     3061 aagagaaaaa tgagagtcgc caactcactc agattcagta cacagcctgg cctgaccatg
     3121 gggtacctga cgactcaagt gactttctgg atttcgtttg tcatgtccga aacaagaggg
     3181 ctggaaaaga agagccgatt attgttcatt gcagtgctgg aataggaagg actggggttc
     3241 tcatcactat ggaaactgct atgtgtctca ttgaatgcaa tcagccagtg tatccactag
     3301 acattgtaag aacaatgaga gatcaaagag ccatgatgat ccaaacccct caagtgcttc
     3361 cagtcctgtt ttgaaaagag gtggggataa ggtcagcctg ttttgttcct gctactaatg
     3421 gacttgcttc agagctttct ctatttagga taatgttggc tgtgggtgtg tgattcatag
     3481 cctttgttac tttgaggtat gtgctatcca gttctactct atgtagggtt tttttcatga
     3541 aaacatgttg gttttatcaa aggctttttc tacagccctt gagatgatca tattgatttt
     3601 tgtctttaag ttcatccata tagtgtatta tatctgttgg cctacatatg ttcaaccatc
     3661 ccaacatcaa agggtaaagc caatttggcc atagaggata atattttgga tacatatctg
     3721 tattcagttt gcaaggaata tttttgt
//
