LOCUS       XM_001059757            6733 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus protein tyrosine phosphatase,
            non-receptor type 3 (Ptpn3), transcript variant X1, mRNA.
ACCESSION   XM_001059757
VERSION     XM_001059757.6
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086023) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_001059757.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6733
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..6733
                     /gene="Ptpn3"
                     /note="protein tyrosine phosphatase, non-receptor type 3;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 5 ESTs, 161 long SRA reads, 12
                     Proteins"
                     /db_xref="GeneID:362524"
                     /db_xref="RGD:1311363"
     CDS             23..3079
                     /gene="Ptpn3"
                     /codon_start=1
                     /product="tyrosine-protein phosphatase non-receptor type 3
                     isoform X1"
                     /protein_id="XP_001059757.1"
                     /db_xref="GeneID:362524"
                     /db_xref="RGD:1311363"
                     /translation="MGRKVQSERRKAGVGGGGRGRLERRPLGALKALGRANLPGVLGP
                     AKEPRDSQLSHGAAGVGATPNSATEPPSKARCHFRFVVRQALAIPRHAIPESQAHSYS
                     AAVMTSRLRALGGRINNIRTSELPKEKTRSEVTCSIRFLDGLVQTFKVNKQDLGQSLL
                     DMAYGHLGVTEKEYFGLQHGDDPVDSPRWLEASKPLRKQLKGGLPCILHFRVRYFIPD
                     PNTLQQEQTRHLYFLQLKMDVCEGRLTCPLNSAVVLASYAVQSHIGDFNSSIHHPGYL
                     ADSQFIPDQNDDFLSKVESLHEQHSGLKQSEAESCYINIARTLDFYGVELHGGRDLHN
                     LDLMIGIASAGIAVYRKYICTSFYPWVNILKISFKRKKFFIHQRQKQAESREHIVAFN
                     MLNYRSCKNLWKSCVEHHSFFQAKKLLPQEKNVLSQYWTLGSRNPKKSVNNQYCKKVI
                     GGMVWNPVMRRSLSVERLETKSLPSRSPPITPNWRSPRLRHEIRKPRHSSADNLANEM
                     TYITETEDVFYTYKGSLSPKDSDSEVSQNHSPHRGSLSENNPAQSCLTQKSSSSVSPC
                     SNAPGSFSPDGVDQQFLEDYHKVTKGGSIEEASQYYCDKNDDGDGYLVLIRITPDKEG
                     RFGFNLKGGVDQKMPLVVSRINPESPADTCMPKLNEGDQIVLINGRDISEHTHDQVVM
                     FIKASRESHSRELALVIRRKAVRSLAEIRSEDELSQLFPEAMFPACPEGGDSLEGSME
                     LLKKGLESGTVLIQFEQLYRKKPGLAVTFAKLPQNLDKNRYKDVLPYDTTRVLLQGNE
                     DYINASYVNMEIPAANLVNKYIATQGPLPHTCAQFWQVVWDQKLSLVVMLTTLTERGR
                     TKCHQYWPDPPDIMDHGIFHIQCQAEDCTIAYVSREMLVTNTETGEEHTVTHLQYVAW
                     PDHGVPDDSSDFLEFVKYVRSLRVGGEPALVHCSAGIGRTGVLVTMETAMCLIERNLP
                     VYPLDIVRKMRDQRAMMVQTSSQYKFVCEAILRVYEEGLVQTLDPS"
     polyA_site      6733
                     /gene="Ptpn3"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cgggtcaagt tcagagggtg tgatggggag gaaggtgcag tctgagcgca ggaaggcagg
       61 tgtgggagga ggcggaagag gccggctgga acgccggcca ctaggggccc tgaaggcttt
      121 gggaagggct aaccttcctg gcgtcctagg gccagcaaag gagccccgcg actcccaact
      181 cagccacgga gccgctggag tcggcgcaac ccccaactca gccacggaac caccgagcaa
      241 ggctcgctgt catttcagat tcgttgtgcg ccaagctctt gccattccta ggcatgcaat
      301 cccggaaagc caagcacaca gttactcggc ggccgttatg acctcccggt tacgtgcgtt
      361 gggtggaaga attaataata tacggacctc agaattgccc aaagagaaaa ctcgatccga
      421 ggtcacctgc agcatacgct ttttagatgg cttggtacag acctttaaag ttaataaaca
      481 agatttgggc cagtcacttc tggatatggc ctatggccac ctgggcgtga cggagaagga
      541 atacttcggc ttgcaacatg gcgatgaccc agtggactcc cccagatggc tcgaggcaag
      601 caaacccctc aggaagcagc tgaaaggagg tctcccctgt atcctgcatt ttcgagtaag
      661 atattttata cctgacccca acacgctgca gcaggaacaa accaggcatt tgtatttctt
      721 acaactgaag atggatgttt gtgaaggaag gttaacctgc cctctcaact cagcggtggt
      781 tctagcatcc tatgcagtgc aatctcatat cggagacttt aattcttcca tacatcatcc
      841 aggctatctt gccgacagcc agttcatacc agatcaaaat gatgactttc taagcaaggt
      901 ggagtcactc cacgaacagc acagtgggct aaagcagtca gaagccgaat cttgctacat
      961 caacatagct cgaacccttg acttctacgg agtggagctt catggaggca gagatctaca
     1021 caatttagat ctaatgatcg gaattgcgtc tgcaggcatc gcagtgtacc gaaaatacat
     1081 ctgcacaagt ttctaccctt gggtgaacat actcaaaatt tctttcaaaa ggaaaaagtt
     1141 cttcatacac cagcggcaaa agcaggctga atccagggaa catatcgtgg ccttcaacat
     1201 gctgaattac cgatcctgca agaacttgtg gaaatcctgc gtggagcacc attcgttctt
     1261 tcaggcaaaa aagttactac ctcaggaaaa gaatgttctg tctcagtact ggactctagg
     1321 ctccaggaac cccaaaaagt ctgtaaataa ccaatattgc aaaaaggtga ttggagggat
     1381 ggtgtggaac ccagtcatga ggagatcctt atcggtggaa cggctagaaa ccaagagtct
     1441 gccttcccgg tcgcctccca tcacccccaa ctggcgaagt ccacggctcc gccatgaaat
     1501 ccgcaagccc cgccattcct ccgcagacaa cctggccaat gagatgacct acatcacaga
     1561 aacggaggac gtgttctata cctacaaggg atccctatcc cccaaagaca gcgattccga
     1621 agtttcccag aaccacagcc cacaccgggg gagtctgtct gaaaacaacc cagcccaaag
     1681 ctgcctgacc cagaagtcat ccagttctgt gtctccatgt tcaaatgcac caggctcctt
     1741 ctccccagat ggagttgacc agcagttctt agaagactac cacaaggtga ccaaaggagg
     1801 ctccatcgag gaagccagcc agtactactg tgataagaat gacgatggcg atggctacct
     1861 agtcctgatc cggatcacac cagataaaga gggaagattt ggatttaatc ttaagggagg
     1921 agtggatcaa aagatgccgc ttgtggtctc gaggatcaac ccagagtccc ctgcggatac
     1981 ctgcatgccg aaactgaatg aaggggatca gatcgtgctg atcaatggcc gggacatctc
     2041 agagcacact cacgaccagg tggtgatgtt catcaaagca agccgggagt cccactcgag
     2101 agaattggcc ctggtgatca ggaggaaagc tgtacgctcg ctggcggaga tcagatcgga
     2161 agatgagctg agtcagcttt tcccagaagc catgtttcct gcgtgtcctg agggtgggga
     2221 cagtctggag ggatccatgg agctgttaaa gaaaggtctg gaaagcggta cagtgttgat
     2281 ccagtttgag caactctaca gaaagaagcc cggcttggcc gtcacatttg caaagctgcc
     2341 tcaaaatttg gataaaaacc gatacaaaga tgtgttgcct tacgacacca cccgggtatt
     2401 attgcaggga aatgaagatt atattaatgc cagttatgtg aacatggaga ttcccgctgc
     2461 taaccttgtg aacaagtaca ttgccactca gggaccgctg ccacacacct gtgcacagtt
     2521 ttggcaagtt gtctgggatc agaagttgtc tcttgttgtc atgctgacaa ctctcacaga
     2581 gcgagggcgg accaaatgtc accagtactg gccagatccc cctgacatca tggaccacgg
     2641 catctttcac atccagtgtc aggcagagga ctgtaccatt gcttacgtgt cccgagaaat
     2701 gcttgttaca aacactgaga ccggggaaga gcacacagtg acccatctcc aatatgtcgc
     2761 gtggcctgac cacggcgtgc ctgatgactc ctcagacttc ctggagtttg tgaagtacgt
     2821 gaggtccctg cgggtaggcg gtgagcctgc ccttgttcac tgcagtgcgg gaataggtcg
     2881 aacaggtgta ttggtcacta tggaaacagc catgtgctta attgagagga acctgcctgt
     2941 ttacccactg gatattgtcc ggaaaatgag agaccagcgc gccatgatgg tgcagacatc
     3001 aagccaatac aagtttgtgt gtgaagcgat tcttcgagtg tatgaagaag gcttagtcca
     3061 gacgttggat cccagttagg acaactgtga agtggtcatt cctccttccc tagggcgact
     3121 tcctgaacaa ggggacgcac attcccctgg aggcctccag agatgctggt cactgtggga
     3181 aagggatgag cttctccgaa cccaggcact ttaaatttct gtggaaaaga tatcctgtac
     3241 ataagaactg atatgtagat gtgcatgcag ctatgactcc tttgggccca gagataagca
     3301 acaggggatc tccagttggg aactgtgttt ctccctacat atcaccgtcc cccgtcatcc
     3361 atccttgagc agtgaaaggg gacaccagca gtgctgttga cacccctccc accagaagcc
     3421 agacaacgtg gctgcttgtg gttgctcaag tgttttgtgt gttgttctgt gtgggactcc
     3481 aagggctgaa cttgcttggc aattggtgtc cattacccct gacaccaggg aaaactcaga
     3541 tgaatgtaac acaggcaggg cacaagggac ttcaggccgg aggataaaca ggatctattc
     3601 tgccctccct ccctccttct gcctcatctc taccccttct gccacccaaa gcaccccgtt
     3661 tccccacccc gaattccttc tcttcaggat cacgcccagt gcctgaacca gtctcatgat
     3721 gtatgttcag gtgaattctc agccgagact gggaaccaga ctctgcataa ttctgagtct
     3781 caggctttgg aagcaggcga gcctctgctc accccctact gtatcctcgg actccatgac
     3841 tggaatcgcc gactactgaa tctctggatt gctgctactt caagctctca cacttgaaac
     3901 aagacgattt tcttgggggc ggggggatga tagcatccaa atattcagaa ttttagaccc
     3961 ttctgagaaa tgaccttcta gtaagtggcc atgagaaaca ctgcttctca agagtggtgc
     4021 gtgcgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     4081 gtctgtctgt ctgtctgtct gtctgtctgt ctctgtgtgt gtgtctgtct gtgtgtgtct
     4141 ttgtatgcct gtaggtgggt gactttctca ggattcctaa cttgattcaa attattgttg
     4201 agtttatgta aagaattcat gtctatacag aagaacaagt gtgttcgttc accctaggtt
     4261 acaatggtct ccatttcatt tcagaggaga gaatcaggct atctgaatat aaacacaatt
     4321 tgatgttaat ttattctaag tactctggga ttttgattgt cctaaagaat tctgctctgt
     4381 gaataccatg ttaatttttt ttttaatttg tggcaggatt gtagcgaatt atttaaggaa
     4441 aataaattac atgaatgctt taaggtggta tttttaaata gccgttttta tgtattgaga
     4501 agaatgtcag caggtttctt aatggtatta agggaaaagg atactttaac gttatcatgt
     4561 atgaagacga agctacatag atacttactt aacaggtacg ggaccaatta aagcattttc
     4621 tagttgcaag atgggtaagg acctgtagaa aggatgccag gttgttaaac gttctttatt
     4681 tgcaggctca gtttatgtgt ctacttcccc tgcctgtctt tttacccatg cacatcttaa
     4741 tgctcagtga catgagtgga aggtgcccag tgccctgtac aatgagaaac tggaatttgg
     4801 ttctctatgc cactcaacat cagggagccc tcagtctagg aacttgggat ctgtgcctct
     4861 ttctgtgtcc aataaagaga accaacactt gggacttgag ggcactcaag aattagatca
     4921 cactatgaaa actaatttcc accctctgga atttataaac cagtgccact gaagtcctag
     4981 gaaggttgac ttctttggtt gaccctaagt gcatcagaca agtgaaaccc accgggattt
     5041 catagaacag tgttgggggg aggagtgggg agcacagaag acagaggact gatacctttt
     5101 ctcagcctgg attctgagaa cgctctcagt aaagcaccga aaagaggagg agtagagagg
     5161 gtgctgggtg catttcagtg gtaccaggct gtttaacaaa tcatcattgt ttgatagaaa
     5221 tgtttatcac caccctgtgg gcaaaccact tgcagagtct gaatgtcctt ggagattgtt
     5281 ttattatttt tctggaaaca agttgttgag tgtggtcatg aaaatgctgc tgttagactt
     5341 acataatatt ctgtgaagct tgaaaaagct gcaactgcgc tcgctcgctc tctctccctc
     5401 ctcctcctcc tccttccctc cctttctccc tctccctccc tccctctctc tctctctcct
     5461 tctttccctt cccctccccc ctctgccatt gtatggggcc agcagttcag acacagcagt
     5521 cattgccaga aacaaaatcc gtgggatctt gagaaggaca agacaagaaa atgaccccaa
     5581 ggagcagaat gcccaggtaa actgggtcat tattaccact taaaaacaaa agctccgagc
     5641 tcccattttc ctgcatccca cacttcacgg ttgcttttaa gaagctatgt ttcatcctaa
     5701 gaattgcatc aggagcaagg ctaaatattt tgcctggaaa atttggctgg ttgtgaatgg
     5761 agaaggtatt tatatcctac attccagcac cttcccaaag agcagattag acaccccagt
     5821 gtacttcctt catccgggtg ggttccctgc tggtaccact ctccagaacc catgcgtggt
     5881 gtgttgattt tccagagaga aaaattaagt gaagttcatt tagtggtggg gaggcagggt
     5941 gggtggatct ccagcgtgta gcggtatttg tactttccag ggtgccttgg gacttaaatg
     6001 tgcctccaag acttgtgagg ttctctcaat gctgtgctct tgattgaccc tctccccctc
     6061 ccccctgcat gcctttatcc ttcaaagtta cgatgggggg tgggggggag taagtagcct
     6121 cttcatcctc ccaaggcaac cgggaggcag catcagcagg gaagaattaa tgggacgtag
     6181 tccagacctg ggcctgggcg tcagccctca gcccctcagc cagtttctgt ttgcttgtgt
     6241 tgagaagtgc tgatgactgg gtagaacaga tgaggtcagt cacaggtata tttcagggaa
     6301 acaagattca accttaaccc gatctgaaga gctggcacag agaaacaccc ggtcggtctg
     6361 tgacttgtcc ccaagagatt ggttttctca gcccttatca ctgtggaatt gcaaaggtag
     6421 agatcaccac cctcctggtt cttcacctgt catcctagag cagacctaga aaagacggcc
     6481 aagtcccttg tgagctcagc ctgagcaatc aaaccccgaa gactgagaat agcaatgtcg
     6541 cttgcttgat agctctcgta ccactggagc aaccacagga ctgtgctaag ccatagtttt
     6601 gtaaagttat ctttagtcaa tcagcaatat gtgttcctgt aaatttggaa tgtttttcat
     6661 tctgacttgt tgtcagggac tctactgaaa aacaacttga tcaatataaa agcgtccgag
     6721 ctatgcaaca cta
//
