LOCUS       XM_039112026             900 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus prostaglandin reductase 2 (Ptgr2),
            transcript variant X5, mRNA.
ACCESSION   XM_039112026
VERSION     XM_039112026.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039112026.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..900
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..900
                     /gene="Ptgr2"
                     /gene_synonym="Zadh1"
                     /note="prostaglandin reductase 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 8
                     ESTs, 2 long SRA reads, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 75 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:299194"
                     /db_xref="RGD:1310518"
     CDS             188..748
                     /gene="Ptgr2"
                     /gene_synonym="Zadh1"
                     /codon_start=1
                     /product="prostaglandin reductase 2 isoform X3"
                     /protein_id="XP_038967954.1"
                     /db_xref="GeneID:299194"
                     /db_xref="RGD:1310518"
                     /translation="MIIQRVVLDSRPGKNGNPVAENFRVEEVSLPDTINEGQVRVRTL
                     YLSVDPYMRCKMNEETGADYLAPWQLAQVADGGGLGVIEESKHQKLAKGDFVTSFYWP
                     WQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHVSAGSNQTMVV
                     SGAAGACGSLAGQVLLAIEITLASAF"
ORIGIN      
        1 tccgggcacc ggaagctgga tgaagccggc aaaaaaggag gaagtttcaa gccagggtga
       61 cctgtgggcg tcctcgtcga gctcccggcg acaccggcgg tatagcttgg gacgtagact
      121 aggggttgcc cagtaacagg aattatttta tatagaagtc ttgtgaaacc attgcacaaa
      181 tcaagtgatg atcatacaaa gagtggtatt ggattcccga cctgggaaaa atggaaatcc
      241 cgttgcagag aatttcaggg tggaagaagt cagtttaccg gatactatca acgaaggaca
      301 agttcgagta agaactctct atctctccgt ggatccttac atgcgctgta agatgaacga
      361 agagactggt gctgactatt tggccccgtg gcagctggca caggtggctg acggtggagg
      421 acttggagtt atagaagaga gcaagcacca gaagttggcc aaaggcgatt ttgtgacttc
      481 tttttactgg ccctggcaaa ctaaggcaat tctagacggg aatggccttg agaaggtaga
      541 cccacaactt gtggatggac acctttcgta tttccttgga gctataggta tgcccggctt
      601 gacttccttg attggggtac aggaaaaagg tcatgtatct gctggatcta atcagaccat
      661 ggttgtcagc ggggcggcag gcgcctgtgg atctttggct gggcaggttc tcttggctat
      721 agagataact cttgcctctg ccttttgagt actaggatca aagattggcc acctgcttgg
      781 ttgttccaga gtggtgggaa tttgtggaac gcatgagaaa tgtctctttt tgacctcaga
      841 gctggggttt gatgctgcag tcaattacaa aacagggaat gttgcagaac agcttcgaga
//
