LOCUS       XM_017596760            3518 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus patched domain containing 4 (Ptchd4),
            transcript variant X1, mRNA.
ACCESSION   XM_017596760
VERSION     XM_017596760.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017596760.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017596760.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3518
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3518
                     /gene="Ptchd4"
                     /note="patched domain containing 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     3 Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 11 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:301271"
                     /db_xref="RGD:1563020"
     CDS             1..2715
                     /gene="Ptchd4"
                     /codon_start=1
                     /product="patched domain-containing protein 4 isoform X1"
                     /protein_id="XP_017452249.1"
                     /db_xref="GeneID:301271"
                     /db_xref="RGD:1563020"
                     /translation="MCFLRRPGAPASWIWWRMLRQVLRRGLQSFCHRLGLCVSRHPVF
                     FLTVPAVLTITFGLSALNRFQTESDLERLVAPSHSLAKIERSLASSLFPLDQSKSQLY
                     SDLHTPGRYGRVILLSPPGDNILLQAEGILQTHRAVMEMKVNHKGYNYTFSHLCVLRN
                     QDKKCVLDDIISVLEDLRQAAVSNKTTARVQVRYPNTKLKDGRNSFIGHQLGGVVEVP
                     NSKDQRVKSARAIQITYYLQTYGSATQDLIGEKWENEFCQLMRKLQDEHQDLQLYSLA
                     SFSLWRDFHKTSILTRSKVLVSLVLILTTATLSSSMKDCLRSKPFLGLLGVLTVCISI
                     ATAAGIFFITDGKYNSTLLGIPFFAMGHGTKGVFELLSGWRRTKENLPFKDRVADAYS
                     DVMVTYTMTSSLYFITFGMGASPFTNIEAVKIFCQNMCVSILLNYFYIFSFFGSCLVF
                     AGQLEQNRYHSIFCCKIPSAEYLDRKPVWFQTVMSDGHQQTSHHETNPYQHHFIQHFL
                     REHYNEWITNIYVKPFVVILYLIYASFSFMGCLQISDGASIINLLASDSPSVSYAMVQ
                     QKYFSNYSPVIGFYVYEPLEYWNSSVQEDLQRLCSGFTAVSWVEQYYQFLKASNISAN
                     NKTDFISVLQSSFLKKPEFQHFRNDIIFSRAGDENNIIASRLYLVARTSRDKQKEVIE
                     VLDKLRPLSLSKSIRFIVFNPSFVFTDHNSLSVTVPVLIAGFGVLLVLVLTFFLVIHP
                     LGNFWLILSVTSIELGVLGLMTLWNVDMDCISILCLIYTLNFAIDHCAPLLYTFVLAT
                     EHTRTQCIKSSLQEHGTAILQNITSFLIGLVPLLFVPSNLTFTLFKCLLLTGGCTLLH
                     CFVILPVFLTFFPPSKKHHKKKKRAKRKEREEIECIEIQENPDHVTTV"
ORIGIN      
        1 atgtgctttt taagacggcc gggagcgcct gcgagctgga tctggtggag gatgctgcgg
       61 caggtgcttc gcagagggct ccagtcattc tgccacaggc tgggcttatg cgtgagccgg
      121 cacccggtct ttttcctcac cgtgccggca gtcctgacca tcaccttcgg cctcagcgcg
      181 ctcaaccgct tccagaccga gagcgacctg gagcgcctgg ttgctcccag ccacagcctg
      241 gccaagatcg agcgcagcct agccagcagc cttttccccc tggaccagtc caaaagccag
      301 ctctattcgg acttacacac ccctgggagg tatggcaggg tgatcctcct ctccccaccc
      361 ggggacaata ttttgctcca ggctgagggg atcctgcaga cccaccgagc cgtgatggaa
      421 atgaaggtga accacaaggg ctataattat actttttccc atctgtgtgt gttgagaaat
      481 caggataaga aatgcgtgct ggatgatatt atttcagtgc tagaggatct caggcaggct
      541 gccgtctcca ataagacaac agccagggtg caagtaaggt atcccaacac taaattaaag
      601 gatgggagga acagttttat tggacaccag ctgggcgggg tagtggaagt gccaaacagc
      661 aaagaccagc gggtcaagtc agccagagcc attcaaatca cctactacct ccagacctat
      721 ggttctgcca ctcaagacct cataggggag aagtgggaga atgagttctg tcagcttatg
      781 aggaagctcc aggatgagca ccaagacctc caactgtact ctctggcatc ttttagcctg
      841 tggagagact ttcataagac cagcatcctg accagaagca aggtcctggt gagcctcgtg
      901 ctgatcctga ccacagccac cctgtccagc tccatgaagg actgcttgcg cagtaagccc
      961 ttcctgggcc tcctgggggt gctcacggta tgcatttcca tcgccactgc agccgggatc
     1021 ttcttcatca ctgatgggaa gtacaactcc accctgctgg gaatcccttt cttcgccatg
     1081 ggtcatggaa ctaaaggagt atttgagctt ctgtctggat ggcggagaac caaagagaat
     1141 ttacccttca aagacagggt agcagacgcc tattctgatg tgatggtcac ctacaccatg
     1201 accagttccc tgtacttcat cacgtttggt atgggtgcca gccccttcac aaacatagag
     1261 gcagtgaaga tcttctgtca gaatatgtgt gtctctattc tattgaacta cttctacatt
     1321 ttctctttct ttggctcttg cctggtcttt gctggacaac ttgagcaaaa tcgataccac
     1381 agcatctttt gctgtaagat cccttctgca gaatacctgg accgcaagcc tgtgtggttc
     1441 cagacagtaa tgagtgatgg gcaccaacag acatcccatc atgagacaaa cccctaccag
     1501 caccatttca tccagcactt cctccgagaa cattacaatg agtggattac caatatctat
     1561 gtgaagccat ttgtggtcat cctgtatctc atttatgcct ctttctcctt catggggtgc
     1621 ttgcagatca gtgatggagc cagcattatc aacctactag ccagtgactc accgagtgtg
     1681 tcctatgcca tggttcagca aaaatatttc agcaactata gccctgtaat aggattctac
     1741 gtctatgaac ccctggagta ctggaacagc agcgtccagg aggatctgca gaggctctgt
     1801 agtgggttca ctgcagtgtc ctgggtggaa cagtactacc agtttctaaa agcgagcaac
     1861 atcagtgcca ataacaagac cgacttcatc agtgtcctac aaagctcgtt tttaaaaaag
     1921 ccagagtttc aacactttcg gaatgatatc attttctcca gggctgggga tgaaaacaac
     1981 atcatcgctt ctcgcttata tctggtggcc aggactagca gggacaagca gaaggaagtc
     2041 atcgaagttc tggacaagtt gaggcccctg tctctctcaa agagtatccg gttcatcgtg
     2101 tttaaccctt cctttgtttt cacagaccat aatagtctgt cagtcactgt gcctgttctg
     2161 atcgcaggct ttggggttct cctggtgtta gtcctgactt tcttcctagt gatccatcct
     2221 ctgggaaatt tctggctaat tcttagtgtc acctcaattg agctgggcgt tctgggctta
     2281 atgacattgt ggaatgtcga catggattgc atttctatct tgtgccttat ctacacttta
     2341 aattttgcca ttgaccactg tgcaccactg ctttacacat ttgtactagc gactgagcac
     2401 accagaacac aatgtataaa aagctccctg caagagcatg ggacagccat tttgcaaaac
     2461 attacttctt ttcttattgg gttggtcccc ctcctctttg tgccttcaaa cctgaccttc
     2521 acactgttca aatgcttgct gctgaccggg ggttgcacgc ttctgcactg ttttgttatc
     2581 ttacctgtgt tcctaacctt ttttcctcct tccaaaaagc accacaagaa aaagaaacgt
     2641 gccaaacgaa aggagagaga ggaaattgaa tgcatagaaa tccaagagaa cccagaccat
     2701 gtcaccacag tctgagggtg gagacttttt cttttccagt gttgcacaat gatgcagggc
     2761 tagtaaggct cagacctcag ctgcttgggc tggccagggg taacaaggca agtcagatca
     2821 agagtgtatt attcatgaca catccaaggg tctgcttttt tcagagaaag agatgataaa
     2881 atgaggtgaa gtcctataca accttgtgct ccatgagaga taattttcca gacattgatc
     2941 ttagagtttt ttctgagaaa tggatggatt ggtgtgttaa aatggaaggc taaaatatct
     3001 aaagattctt agaagaaatg gagaagggag taagtggtct ccagataggg ggtaagacag
     3061 agaaaatgtc taatttgtca agtcacttca tgtttgcttt ttgaacaggt caagcaaagg
     3121 aaacttatgc acatgggaag tacatattta atcctggcta aaccaaagga ctggaccacc
     3181 caatccactt tgtgtgtaca tataagtata catctacatg tacttatatt tgtctttagt
     3241 gtgcattggt gttttggtga aagaaagtgt ccattttcag gtaggctggc ctctctctaa
     3301 aagtcaaatc agctttagcc aaatatataa gctcattaga gaagatgcaa aatatctaat
     3361 tggccacttg aaatcaactc aactgtctag ataacaagat tattatgaac tgtttgataa
     3421 caaaataaac agaaatttga atccattaaa ttctacatat catgttgttg gtcactgaga
     3481 tcctaccttt tgagatgact tcacaaaaaa aaaaaaaa
//
