LOCUS       NM_001408928            3180 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus patched domain containing 3 (Ptchd3), mRNA.
ACCESSION   NM_001408928 XM_003750990
VERSION     NM_001408928.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3180)
  AUTHORS   Fan,J., Akabane,H., Zheng,X., Zhou,X., Zhang,L., Liu,Q.,
            Zhang,Y.L., Yang,J. and Zhu,G.Z.
  TITLE     Male germ cell-specific expression of a novel Patched-domain
            containing gene Ptchd3
  JOURNAL   Biochem Biophys Res Commun 363 (3), 757-761 (2007)
   PUBMED   17904097
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Jul 1, 2022 this sequence version replaced XM_003750990.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.3252019.1,
                                           SRR26643429.40232.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-993               JAXUCZ010000010.1  107595812-107596804
            994-1115            JAXUCZ010000010.1  107597630-107597751
            1116-1261           JAXUCZ010000010.1  107600974-107601119
            1262-3180           JAXUCZ010000010.1  107604918-107606836
FEATURES             Location/Qualifiers
     source          1..3180
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.3"
     gene            1..3180
                     /gene="Ptchd3"
                     /note="patched domain containing 3"
                     /db_xref="GeneID:688333"
                     /db_xref="RGD:1590039"
     exon            1..993
                     /gene="Ptchd3"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..2757
                     /gene="Ptchd3"
                     /codon_start=1
                     /product="patched domain-containing protein 3"
                     /protein_id="NP_001395857.1"
                     /db_xref="GeneID:688333"
                     /db_xref="RGD:1590039"
                     /translation="MISSKVAPGEEEEQQEAPAEVAPAEEELRETEGQLEAVPPDEAS
                     PSWATGPPLERLPPVGQEAPPPRRCHTDCLEAPLSSCFLRLGALVGANPWLFLLGPVL
                     LTASLGTGLIFLPKEKENLEEQYTPIGSPAKAERRFVQSHFSTNDSYRFSASRTSSET
                     NFASILVVSHRDSLLEPEAFAEVSRLDRAVQALKVVQENGTQILYPEVCAKYSVGCVP
                     PNPLLFSWQQNSSLNLSELTFPIHSVADHLIHLAGFFGGNVLGYATTGNRQRLVESRA
                     MRLLYYLKTEDPEDRERSQAWLTHFLDHFNDMKSDLALEDIEVVYFTSLSRQLEFEAT
                     SKTVIPLFHLAYILIILFAVVSCSRLDCIRNKMWVAVFGVFSVAMSVVSGFGLMLHIG
                     VPFVIIVANSPFLILGVGVDDMFIMISAWQKTSLTESVSERLSNSYSKVAVSITITTI
                     TNVLAFYTGITSSFRSVQYFCIYTGTTLLFCYFYSITCFGAIMALDGKREVVWSRWLE
                     KPDQKYSSFKKFCCVPFGSFPDEHGDDNHPMNLFFRDYFGPFLTTSKAKFIVVLIYIF
                     YIISSIYGCFQVQEGLDLRNLASDDSYITPYFNVEEDYFSDYGPRVMVIVTETVNYWD
                     KDVRQKLDKCMTQFEQNEYVDKNLTEFWLEAYMQYMNNTGNNPNDKNTFMNNIAGFLN
                     FFPVFTYDINVSSSNEITSSRGFIQTIDVSSSSNKKRMLLKLRGIAENCEVPLMVYNQ
                     AFIYFDQYAAIIENTVRNVMIASTAMFIVSLLLIPHPVCSLWVTFAIASVIVGVTGFM
                     AFWNVNLDSISMINLVICIGFSFDFSAHISYAFVSSNEPSVNKKSIEALYLLGYPVLQ
                     SAISTIIGVCVLAAAKAYIFRTFFKIMFLVMFFGAAHGLIFIPVFLTFF"
     exon            994..1115
                     /gene="Ptchd3"
                     /inference="alignment:Splign:2.1.0"
     exon            1116..1261
                     /gene="Ptchd3"
                     /inference="alignment:Splign:2.1.0"
     exon            1262..3180
                     /gene="Ptchd3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acagctccgc agcagctcct ctgaacagcc gtgggtgaca tgatctcctc caaggtggca
       61 ccaggagagg aggaggagca gcaggaggca ccggccgagg tggcgccggc tgaggaggag
      121 ctgcgggaga cggaaggaca actggaagcc gtccctccgg acgaggcgag cccaagctgg
      181 gccaccgggc cgccgttgga gcgcctgccg cccgtgggtc aggaggcccc gccgccgcgc
      241 cgctgccaca ccgactgcct ggaagccccg ctgtccagct gcttccttcg cctcggcgcc
      301 ctcgtgggcg cgaacccatg gctgttcctg ctcgggcctg tgctgctgac ggcgtcgctg
      361 ggcaccggcc tcatcttcct cccgaaggag aaggagaacc tcgaggagca gtacacgccg
      421 atcggcagcc cggccaaggc cgagcggcgc ttcgtgcaga gccacttcag caccaacgac
      481 tcgtaccgct tctccgcctc caggaccagc tccgagacca acttcgcgtc catcttggtg
      541 gtgtcccaca gagactcgct gctggagccg gaagccttcg cggaggtgag caggctggac
      601 cgagcggtgc aggcgctgaa agtcgtccag gagaacggga cgcagatcct gtacccggag
      661 gtgtgcgcca agtacagcgt cgggtgcgtc ccgcccaacc ctctgctctt ctcgtggcag
      721 cagaactcgt cgctgaacct gtcggaactc accttcccca tacacagcgt ggccgaccac
      781 ctcatccacc tcgcgggctt cttcggggga aacgtcctgg gctacgcgac gaccggaaac
      841 cgccagcggc tggtggagtc gcgggcgatg cggctgctgt attacctcaa gacggaggac
      901 cccgaggacc gcgagcgcag ccaggcgtgg ctgactcact tcctcgacca ttttaacgac
      961 atgaagagcg acctggctct ggaagacata gaggtggtct actttacatc cctttccaga
     1021 cagttggagt ttgaggcaac ctccaagact gtgattcctc tgtttcactt ggcatacatt
     1081 ttaatcatac tatttgcagt tgtatcatgc tccaggttgg actgtataag aaacaaaatg
     1141 tgggttgcag tctttggagt gttttctgtc gccatgtcag tggtgagtgg ctttggcctg
     1201 atgctgcaca ttggggtccc atttgtgatc atagttgcaa actcaccatt tcttattctt
     1261 ggtgttggag ttgatgacat gtttatcatg atttctgcct ggcagaagac cagcctcacg
     1321 gagagcgtaa gcgaacgact ctccaattct tactcaaagg tggcagtgtc cattacaatc
     1381 accaccatca ccaatgtcct tgctttctat acgggaatca ccagctcttt cagatccgtg
     1441 cagtattttt gtatctatac gggaacaacc ctgctcttct gctattttta tagcatcacc
     1501 tgttttggag caattatggc tctggatggt aaaagagaag ttgtgtggtc gcgctggctg
     1561 gaaaagccag accaaaaata ttcctcattt aaaaagttct gctgtgtccc attcggttcg
     1621 tttccagatg aacacggaga tgataaccat cccatgaatt tgttctttag agactatttt
     1681 ggtccttttc tcacaacttc caaagccaag tttattgtgg tgctaatata cattttctac
     1741 atcatcagca gtatatatgg gtgcttccaa gtgcaagaag ggttagatct tcgcaacctg
     1801 gcaagtgatg attcctatat cacaccctac tttaatgtcg aggaagacta cttttcagat
     1861 tatggtccaa gagttatggt cattgttaca gaaactgtca actactggga taaagatgta
     1921 agacagaaac tggacaaatg tatgacacaa tttgaacaaa atgagtatgt agataaaaat
     1981 ctcacagagt tttggttgga ggcatatatg cagtatatga ataacactgg aaataatcct
     2041 aatgacaaga atacctttat gaataatatt gcaggctttt taaacttttt ccctgttttt
     2101 acatatgata ttaatgtctc ctcatcaaat gaaatcactt cttcacgagg ctttatccaa
     2161 accatagatg tttcatcctc tagcaataag aaaagaatgt tactaaagtt gcgaggcata
     2221 gctgaaaact gtgaggttcc cttgatggta tataaccagg cattcatcta ttttgatcag
     2281 tatgctgcga taatagagaa tactgttcga aatgtcatga ttgcatcaac agctatgttc
     2341 atcgtttcct tactgctgat ccctcaccca gtgtgttccc tgtgggtcac ctttgctatt
     2401 gcttctgtga ttgtgggagt gacaggtttt atggcattct ggaatgttaa tcttgattcc
     2461 atatccatga ttaatcttgt tatttgtata gggttttctt ttgatttttc tgcacacatc
     2521 tcctatgcat ttgtttccag taatgagcct tcagtcaaca agaagtctat tgaggcatta
     2581 tacttgttag gttacccagt gttgcaaagt gcaatttcaa cgataatagg ggtgtgtgtt
     2641 ttggctgcag ctaaagccta catcttcaga acttttttta agattatgtt tcttgttatg
     2701 tttttcgggg ctgcccatgg cctaattttt attccagtat tcttaacctt tttttgaaag
     2761 tttgtttgaa tacacagtaa caaataaccc taaccagtta tataattctt gatggcctga
     2821 atccagtcta attacaaaat gcactaatta aggctagtca gtagaaaaag atagaaatga
     2881 aattagaaga gggttatggg gtaagaagaa gcagggataa ggataggagg gaagggaggg
     2941 tcatgtggga tgtaaacaag gcacattgta tacatgtatg aaaatgtctc aatgaaaacc
     3001 gtaaatttgt ccaattggta tatgataaaa tatgaatgat taatgtataa gtgaaaacat
     3061 agaaaatgtt aaaaaataaa aatagtcact atctaaagac atttccttga tgtggaagtc
     3121 ccatattaaa ttgttcttta acatattctg caaaaaaatt aaaatttctt taccaaatta
//
