LOCUS       NM_001134718            2632 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus Pentatricopeptide repeat domain 3 (Ptcd3), mRNA.
ACCESSION   NM_001134718 XM_001065864
VERSION     NM_001134718.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2632)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 2632)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 2632)
  AUTHORS   Davies,S.M., Rackham,O., Shearwood,A.M., Hamilton,K.L., Narsai,R.,
            Whelan,J. and Filipovska,A.
  TITLE     Pentatricopeptide repeat domain protein 3 associates with the
            mitochondrial small ribosomal subunit and regulates translation
  JOURNAL   FEBS Lett 583 (12), 1853-1858 (2009)
   PUBMED   19427859
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000148.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001134718.4.
            
            On Jul 26, 2021 this sequence version replaced NM_001134718.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-154               JACYVU010000148.1  1279577-1279730     c
            155-207             JACYVU010000148.1  1277971-1278023     c
            208-244             JACYVU010000148.1  1277833-1277869     c
            245-290             JACYVU010000148.1  1275330-1275375     c
            291-359             JACYVU010000148.1  1273823-1273891     c
            360-464             JACYVU010000148.1  1273254-1273358     c
            465-588             JACYVU010000148.1  1271359-1271482     c
            589-704             JACYVU010000148.1  1269967-1270082     c
            705-760             JACYVU010000148.1  1268322-1268377     c
            761-848             JACYVU010000148.1  1267046-1267133     c
            849-909             JACYVU010000148.1  1266216-1266276     c
            910-995             JACYVU010000148.1  1265696-1265781     c
            996-1140            JACYVU010000148.1  1264793-1264937     c
            1141-1191           JACYVU010000148.1  1264059-1264109     c
            1192-1281           JACYVU010000148.1  1261110-1261199     c
            1282-1310           JACYVU010000148.1  1260848-1260876     c
            1311-1417           JACYVU010000148.1  1259880-1259986     c
            1418-1496           JACYVU010000148.1  1256975-1257053     c
            1497-1587           JACYVU010000148.1  1256782-1256872     c
            1588-1673           JACYVU010000148.1  1256199-1256284     c
            1674-1822           JACYVU010000148.1  1255097-1255245     c
            1823-1864           JACYVU010000148.1  1253989-1254030     c
            1865-2023           JACYVU010000148.1  1253317-1253475     c
            2024-2632           JACYVU010000148.1  1252442-1253050     c
FEATURES             Location/Qualifiers
     source          1..2632
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q32"
     gene            1..2632
                     /gene="Ptcd3"
                     /note="Pentatricopeptide repeat domain 3"
                     /db_xref="GeneID:500199"
                     /db_xref="RGD:1565582"
     exon            1..154
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     CDS             51..2111
                     /gene="Ptcd3"
                     /note="pentatricopeptide repeat-containing protein 3,
                     mitochondrial; pentatricopeptide repeat domain-containing
                     protein 3, mitochondrial"
                     /codon_start=1
                     /product="small ribosomal subunit protein mS39"
                     /protein_id="NP_001128190.2"
                     /db_xref="GeneID:500199"
                     /db_xref="RGD:1565582"
                     /translation="MAAAAAARCLPFRSGLVLLRTTRETGVYEPKLCCRFYPGSESLP
                     KVEGTDITGIEEIVIPKKKTWDKVAVLQALASTVTRDPTAAPYVFQDDPYLIPTSAME
                     SRSFLLAKKSGETAAKFIINSHPKYFQKDIAEPHIPCLMPEYLEPQIEGVSEAALKER
                     VKLKRVKASVDIFDQLLQAGTTVSLETTNSLLDLLCYYGDQEPPADYPFQQTEHLENL
                     EEAAEENNQTPRMESGLWKAQNNAERIFALMPEKNARSYCTMIRGMVKHRAYAQALNL
                     YTELLNNRLSADVYTFNALIEAKTFIPNEKFEEKWNDILDLLRHMVAQKVKPNLQTFN
                     TTLKCLRKFHSLGRLPALQILREMKHIGIEPSLATYHHIIHLFYPRGSSIKIPSLIIY
                     DIMNELEGRTFSPQDLDDDKFFQSAMTVCSSLRDLELAYQLHGLLNTGDNRKLIGPDS
                     QRKAYYSKFFSLICSLEQIDVTLKWYKDLIPSVFLPHSQIFIGLLQAVDVANRLEMVP
                     QIWKDSKEYGHTFRGALREEVLMLMARDKHSPELQVAFADCAADIKSTYENQDARQTA
                     LDWPANPLHYIAFLFLRGGRTQEAWKMLTLFRKHNKIPRNELLEEFMDTAKASSSTTL
                     AIEVVRLASAFSLPISESLAQRVMMDFTVDPEQKEALSNLTALNSSDGESSSDSDSDI
                     SENK"
     exon            155..207
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            208..244
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            245..290
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            291..359
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            360..464
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            465..588
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            589..704
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            705..760
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            761..848
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            849..909
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            910..995
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            996..1140
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            1141..1191
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            1192..1281
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            1282..1310
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            1311..1417
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            1418..1496
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            1497..1587
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            1588..1673
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            1674..1822
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            1823..1864
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            1865..2023
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
     exon            2024..2632
                     /gene="Ptcd3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaccctgtag gcggagggcg ttcccaacgt gctctgcgag gagttcaaag atggcggcgg
       61 cagcggctgc tcgctgtttg ccctttcgca gcggtcttgt cttgctgcgg accactcggg
      121 aaacgggtgt gtatgaaccg aagctctgtt gcagatttta tcctggaagt gaatccctcc
      181 caaaggttga aggaacagat ataacaggga ttgaagaaat agtcattcca aaaaagaaaa
      241 catgggataa agtggccgtt cttcaagcac ttgcatccac agtaaccagg gatcctacag
      301 ctgcacctta cgtgtttcag gatgaccctt acctcatacc aacctctgcg atggagtctc
      361 gttcgttttt attggcaaag aaatctggag agactgcagc aaagtttatt attaattcac
      421 atcccaaata tttccaaaag gatatagctg agcctcatat accgtgctta atgcccgagt
      481 acttggagcc tcagattgaa ggtgtgagtg aagctgccct gaaggaacga gtcaaactca
      541 aaagagtcaa agcttcagtg gacatttttg accagctctt gcaagcagga accacagtct
      601 ctcttgaaac aactaatagt cttttggatt tattgtgtta ctatggtgat caagagcccc
      661 cagctgacta tccttttcaa caaaccgaac atttggaaaa cttggaagag gctgctgagg
      721 aaaacaacca aacacccagg atggagtctg gtctttggaa agcacaaaac aatgccgaga
      781 gaatctttgc tctgatgcca gagaaaaatg cacgctccta ctgcacgatg atccgaggga
      841 tggtgaagca ccgagcttat gcacaggcgt tgaacttgta cactgagtta ttaaataaca
      901 gacttagtgc tgatgtatac acctttaatg cattgattga agcaaaaaca ttcattccca
      961 atgagaaatt tgaggaaaaa tggaatgata tattggatct actaagacat atggttgcac
     1021 agaaggtaaa gccaaacctg cagacgttta acacaacgct gaaatgtctc cgcaagtttc
     1081 attcacttgg aaggctacca gccttacaga tactacgtga aatgaaacat attggaatag
     1141 aaccctcact tgcaacttac catcatatca ttcacctctt ttacccacga ggtagctcta
     1201 taaaaatacc atcccttatc atctatgata tcatgaatga attagaggga agaacatttt
     1261 ctccacagga cctggatgat gataaatttt tccagtcggc catgactgtg tgttcatctc
     1321 tcagagattt agagcttgct taccaattac atggtctttt aaacacggga gacaaccgga
     1381 aactgattgg acctgattct cagcgtaaag cgtattattc gaagtttttc agtttgattt
     1441 gttcactgga acaaattgat gtcaccctga agtggtataa ggacctgata ccttcagtat
     1501 ttcttcccca ctcccaaata ttcataggtc ttcttcaagc agtggatgtg gccaataggt
     1561 tagaaatggt tcctcagatt tggaaagaca gtaaagaata tggccatact tttcgaggtg
     1621 ccctaagaga agaagtgttg atgctcatgg ccagggataa acattcacca gagcttcagg
     1681 ttgcatttgc tgactgtgct gctgatatca aatccacata tgaaaaccag gatgcccggc
     1741 agacagctct tgattggcca gccaaccctt tacattatat agccttcctt tttttaagag
     1801 ggggcagaac ccaggaagcc tggaaaatgt tgacactttt cagaaagcat aataagattc
     1861 ccagaaatga gttgctggag gaatttatgg acacagcaaa agcatccagt agcactactc
     1921 tggccattga ggttgtcagg ctggcaagtg cctttagctt gcctattagt gagagccttg
     1981 cccaaagagt aatgatggat ttcacagttg acccagagca aaaagaagcc ctgagtaacc
     2041 tcactgcact gaacagtagt gatggagaaa gcagcagtga cagtgacagt gacatcagtg
     2101 aaaacaaatg aaaggaagaa gtggctcaca atagctgcta gaatgttaga agtggtaaaa
     2161 tacacagata cagggctggc atctaataga agttcctttg tattacactg gcctaaacac
     2221 aagacccctt ggaaatgcaa gggggggggg gggtgttcat ttgcagtacc gcaaggtgca
     2281 catctggcca attttttgcc aagacagcaa caagcactgt gaagtctgac ttttggggaa
     2341 caaatcccac atactgcaga ccttcctcat tcctactaca cccatcattt tagaacccac
     2401 aggcctttgc tgcctacctt ctgtgtgcag tttaactgac gagagacaag agtttaaact
     2461 ggttttcatg aagatgccta cttgctgttg agttgatcat atcccagttt ggggagtact
     2521 taaaaagatg gatggtctta ggactaatta aatcagaagc aagctactgg ttttggctgc
     2581 ccaaatggta aaatcattaa ataaagcaat tgtgttattc ttaaaaatct aa
//
