LOCUS       NM_001107648            1629 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus pentatricopeptide repeat domain 2 (Ptcd2), mRNA;
            nuclear gene for mitochondrial product.
ACCESSION   NM_001107648 XM_001070504 XM_226716
VERSION     NM_001107648.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1629)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1629)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 1629)
  AUTHORS   Xu F, Ackerley C, Maj MC, Addis JB, Levandovskiy V, Lee J, Mackay
            N, Cameron JM and Robinson BH.
  TITLE     Disruption of a mitochondrial RNA-binding protein gene results in
            decreased cytochrome b expression and a marked reduction in
            ubiquinol-cytochrome c reductase activity in mouse heart
            mitochondria
  JOURNAL   Biochem J 416 (1), 15-26 (2008)
   PUBMED   18729827
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473955.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001070504.1, XM_226716.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1629
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q12"
     gene            1..1629
                     /gene="Ptcd2"
                     /note="pentatricopeptide repeat domain 2"
                     /db_xref="GeneID:310025"
                     /db_xref="RGD:1310308"
     exon            1..133
                     /gene="Ptcd2"
                     /inference="alignment:Splign:2.1.0"
     CDS             28..1173
                     /gene="Ptcd2"
                     /codon_start=1
                     /product="pentatricopeptide repeat-containing protein 2,
                     mitochondrial"
                     /protein_id="NP_001101118.1"
                     /db_xref="GeneID:310025"
                     /db_xref="RGD:1310308"
                     /translation="MATVFRPLEHLRVPHRSLHPGVTGSGSACCRCTLGAKRYLLTDN
                     IVKLKEFQHKKMVIAYNLPGTKEIYFRNMEEKLTQNKLILREELKTLLHLCQSSEDVR
                     LAKAVIYRYHTENRNFTLGEYKFGPVFMRLCYELDLEDSAMELIRDKHLQGFFVDSTS
                     FNILMNMLFTKGKYESALQVLIEMKNQDVKFSKDTYVLAFAICYKLNSPESLKICTTL
                     REEALMKGDVISRRASCFAVALALNQNQLEKATSIFSQIMNPESITCTNLNILIHIQS
                     NMLESLLKILQDALDPNLSKFVRRHTFSEEVLAKTREKLKGRPTLIARFDEVYGKLHI
                     NGQITIYTLDALLCHVPRDKRSNTLLLKKRTVSHRTLQPLSRSLLTE"
     exon            134..226
                     /gene="Ptcd2"
                     /inference="alignment:Splign:2.1.0"
     exon            227..356
                     /gene="Ptcd2"
                     /inference="alignment:Splign:2.1.0"
     exon            357..474
                     /gene="Ptcd2"
                     /inference="alignment:Splign:2.1.0"
     exon            475..553
                     /gene="Ptcd2"
                     /inference="alignment:Splign:2.1.0"
     exon            554..645
                     /gene="Ptcd2"
                     /inference="alignment:Splign:2.1.0"
     exon            646..759
                     /gene="Ptcd2"
                     /inference="alignment:Splign:2.1.0"
     exon            760..834
                     /gene="Ptcd2"
                     /inference="alignment:Splign:2.1.0"
     exon            835..948
                     /gene="Ptcd2"
                     /inference="alignment:Splign:2.1.0"
     exon            949..1629
                     /gene="Ptcd2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttggtgca gcccggcccg gaacaatatg gctacggtat ttcggccctt ggaacacctg
       61 cgggtaccgc atcgttcact gcatcccggg gtgacaggct caggctccgc ctgctgccgc
      121 tgcactctcg gagctaaaag atacctactc acagataaca ttgtgaaatt aaaggaattt
      181 caacataaaa agatggttat tgcatataac ctccctggca ccaaagaaat ctatttcaga
      241 aacatggagg agaagttgac ccagaacaaa ctcatcttga gggaggagct gaaaacgctg
      301 ctgcacttgt gccagtcctc ggaagacgtg cgactggcca aagccgtcat ttacaggtac
      361 catacagaaa acagaaattt cacgttggga gagtataagt tcgggcccgt tttcatgagg
      421 ctgtgctacg agttggacct tgaggactct gcaatggagc tcatcagaga caagcatcta
      481 caaggtttct tcgtagactc cacatcattc aatattttga tgaatatgtt atttaccaaa
      541 ggcaaatatg aaagtgcgct gcaagtgctg attgaaatga aaaaccaaga tgtgaagttc
      601 agcaaagaca cctatgtcct cgcttttgca atctgctaca aactgaacag cccggaatca
      661 cttaaaatct gtactacctt aagagaagaa gccctaatga agggagacgt tatctccagg
      721 agagcatcct gttttgcagt ggcgttagct ctgaatcaga accagttgga aaaagctacg
      781 tccatttttt ctcaaatcat gaatccagaa agcataacgt gtaccaactt aaatatctta
      841 atccacatcc agtcgaatat gttggaaagc ctgttaaaga tcttacagga tgctcttgac
      901 ccaaatttat cgaaatttgt aagaagacac acgttctcag aggaagtgct ggccaaaacg
      961 agagaaaaat tgaagggccg tcctacactc atagccaggt ttgatgaggt ctatgggaag
     1021 ctgcacataa acggtcaaat caccatttac actttggatg ctctgctctg tcatgtcccc
     1081 cgggacaaga gatccaacac attgctgttg aagaagagga ctgtcagcca tcggacctta
     1141 caacctctca gccggtccct gctgactgag taactgtttt ccatctccct ggcgtgagga
     1201 gctgcttcct cacgtgaatt cgtggcttct ccaagcagcc atcttacttc agtggcgctg
     1261 tgctgacact tggtctccct aagacccctg agtgatgctg tgctgagcag agaaatatgt
     1321 cgctcgagca ggggaagctc cacagaaagg cagccaccgc gtgtcagaca ctccaaagga
     1381 aggctcacag ccactacctc agctcagcag cgtggactca gaagtaccac agaaggaatt
     1441 tcaaccttac tgacccttca cggcagaggg gagtttgggg agaggcgtcc tgacgagctc
     1501 gggagatctg atctctggaa atggccgagg cctgtctcag gcctgctgtc atcttctgtc
     1561 tgtgtgcacg tttccagtct cgggccagga gagttggact ttctctgaca taaataaaag
     1621 gtacccgca
//
