LOCUS       XM_006233236            3815 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus polypyrimidine tract binding protein 2
            (Ptbp2), transcript variant X1, mRNA.
ACCESSION   XM_006233236
VERSION     XM_006233236.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006233236.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006233236.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3815
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3815
                     /gene="Ptbp2"
                     /gene_synonym="Ptb2; PTBLP; PTBLP-L; PTBLP-S"
                     /note="polypyrimidine tract binding protein 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 53 ESTs, 1 long SRA read, 5 Proteins, and 95% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 127 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:310820"
                     /db_xref="RGD:1359267"
     CDS             612..2225
                     /gene="Ptbp2"
                     /gene_synonym="Ptb2; PTBLP; PTBLP-L; PTBLP-S"
                     /codon_start=1
                     /product="polypyrimidine tract-binding protein 2 isoform
                     X1"
                     /protein_id="XP_006233298.1"
                     /db_xref="GeneID:310820"
                     /db_xref="RGD:1359267"
                     /translation="MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDS
                     KKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELA
                     TEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTAN
                     TPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQ
                     FQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPD
                     LPSGDGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGM
                     PGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQ
                     SQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSK
                     NFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVE
                     EAIQALIDLHNYNLGENHHLRVSFSKSTI"
ORIGIN      
        1 aggtgttgtt ttattttact aaacaatggg tcttgtccag tggggtaagc tctttgagga
       61 tggacagttt gtggataagg tctaggatgc tgctatagag tcttttctct ggggctgaga
      121 ccatgaaggg tcatcgggct gggtctggga ttggcctttg tgggtggagg taatgcagct
      181 ttgaggttgg agggaaaagt ggaagctgcc tgagagcagt gttgcagtcc gggccagcct
      241 gaggcatacg cggttgcagg ttgcaggctg caggctgcag gctgtcccac tcataccgcc
      301 cacagaaggg aacccaggac gcccagccag ccactgcagc aggcacgtct cagagggcgg
      361 gagcacgcgc gcgggcaggc ggaggcagcc aacggcggag gcgcccactc ccccggtccc
      421 tgtgccccgc cgctcgtctc ccgccgctgg gcgcccgcgc gctcggctct ttccgccgcc
      481 gcgcgctgcc ccgtgcgctc cggcaccttc ggcaatttcc gtcgggccct ggccgccatt
      541 ttctcgccgc ttgtgtggct cgctggctgc gtggctcggt tcttgggagc gaagctttgt
      601 ccggttcggc aatggacgga attgtcactg aggttgctgt tggtgtgaag agaggatctg
      661 acgagctact ctcaggcagt gttctcagta gtcccaactc taatatgagt ggcatggtag
      721 ttacagccaa tggtaacgac agtaagaaat ttaaaggaga agataagatg gacggggcgc
      781 cctctcgtgt gcttcacatt cgaaagttac ctggtgaagt gactgagacc gaagtaattg
      841 cgttaggctt accttttggt aaggtgacta acatccttat gctgaaagga aagaaccagg
      901 catttttgga actggcaaca gaggaagcag ctattactat ggttaattac tattctgctg
      961 tgacacctca tcttcgtaac caaccaattt acattcagta ctccaatcac aaagaactaa
     1021 agacagataa cacattaaac caacgtgctc aagtagttct tcaagctgtg acagctgtcc
     1081 agacagcaaa tacacctctc agtggcacca cagtcagtga gagtgcggtg actccagctc
     1141 agagtccagt gcttagaata attattgaca atatgtacta ccctgtaaca cttgatgtcc
     1201 ttcaccaaat attttctaag tttggtgctg tattgaagat aatcacattt acaaaaaaca
     1261 accagtttca ggctttgctc cagtatggtg atccagtaaa cgctcaacag gcaaagctag
     1321 ccctagatgg tcaaaatatt tataatgctt gctgtaccct aaggattgat ttttccaaac
     1381 ttgtgaattt gaatgtaaaa tacaacaatg ataaaagtag ggattataca cgacctgatc
     1441 ttccatctgg agacggccag cctgcattag acccagctat tgctgcagca tttgccaagg
     1501 agacgtccct tttagggctt cctgttgcag ctgtcccagg agctctcagt cctttggcta
     1561 ttcctaatgc tgctgcggca gctgctgccg ctgccgctgg ccgagtgggc atgcctggag
     1621 tctcagctgg tggcaacaca gtcctgttgg ttagcaattt aaatgaagag atggttacgc
     1681 cccaaagtct gtttaccctc ttcggtgttt atggcgatgt gcagcgcgtg aagattttgt
     1741 acaataagaa agacagtgct ctgatacaaa tggccgatgg gaaccagtca cagcttgcca
     1801 tgaatcatct taatgggcag aagatgtatg gaaaaattat tcgtgttact ctctctaaac
     1861 atcagactgt gcaactacct cgagagggac ttgatgatca agggctaaca aaagattttg
     1921 ggaattcacc cctgcaccgt tttaaaaaac cgggatccaa aaactttcag aacattttcc
     1981 ctccttctgc aacccttcac ctgtccaaca tccctccttc tgtagcagaa gaggatctgc
     2041 gaactctgtt tgccaacacc gggggcactg tgaaagcatt taagtttttt caaagagatc
     2101 acaaaatggc tcttcttcag atggcaacag tggaggaagc tattcaggct ttgattgatc
     2161 ttcataatta taaccttggt gaaaaccatc atctgagagt gtctttctcc aaatcaacaa
     2221 tttaaggacg ggagatgaag atggcgggca gatcccattg tttggtgtca tcacctattg
     2281 actgttcaga aaagtgggga ccagagtttg attttttcat gctgttctca ttccttggtt
     2341 ataaatgaaa tggcgtatgt aaggcagagt tgctaactgc tgtatttcat ctgttcagta
     2401 gggaagccat ttttgtctgt ttaaattttt agtttaattt tgcttctttt tttttttttt
     2461 ccaacttagt tgacatacgt gccttacaaa ggaaaactag tgttgctatt gtgcatttac
     2521 taggaaaaag gaattggttg tttagggcac attgttatgt ggaaattaaa atctgtttag
     2581 gcaggggtgt gtcaaaaggt taagtttttg tttctcctgc ttggaactta ttttgaatta
     2641 ttggcttatc acatttcttt ctatttaatc taataagata cttgatactg aaagtgtaaa
     2701 acagcatttt tagttcctac tatcttaggc tttattgctt tgaaaacatt ggccttttgt
     2761 atctcacaaa tctggtctag attcagttat gaatataggc attagttaaa attaacaaga
     2821 tgcagagtat taatttctta agacaagtga tttctgtaag tttgagccct atgtggaaag
     2881 cattgtggaa ccttaacctt tttgtacaca ctcttgtggg acgtatcata taaatgtcag
     2941 cactaagtaa tgtcttgttt gtggctgaat atttttcgta gatgtttttg aagttgacat
     3001 gacttatgtg catttaaata tatattgcca tccttagttt gtaattaaga tttggaaaat
     3061 ggttgtggat ttctgagcat gtgcagactg gtctagctag ttcaggaact ggtgcatgta
     3121 tttttcaaag acaaagaaaa gtgtactgcg aaaacttgca ggaagattaa ttttgtggca
     3181 gttttctaaa actgacaacc aggtgggacc aaagtttatg tgcctttagt cttaatttac
     3241 cttgcattgt aatattcagt tttaataaac cttcaaaata ttttgtattt aggaatagat
     3301 ctgactttaa taaaaacatg gctcagaatc tacaggtcaa atttatttga acagttcttg
     3361 tcaatctgaa ttgttgattc tgttaaatga ccaatacttt ttgaaattga tgtacttagt
     3421 ttcaagattc atagattctg ttatctatgt agacagaatg gtcatgtata ttttctatta
     3481 gttgagtttt tacatcttta gaaatgtaaa attcagtata gtttgaaagc ggcacaatta
     3541 aaaattaatt ttctaacaaa gttgggaggt ttgatggttg tttaatttca ttttgtgtgt
     3601 actctgctta cctctgtagc atgctcaata aacacttctg tagctctgta ttcacctttt
     3661 ctgtctttct ctgctgcctt ttctctctct cctttgtttt cactccactg tgcttctgaa
     3721 ttcatgttta ctctctgcca gggtgggaaa ggagtaataa tactacaatc ctatggcttt
     3781 ataccatgaa taaatccaga tgctgtgaaa atgca
//
