LOCUS       XM_006239064            3557 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus platelet-activating factor receptor
            (Ptafr), transcript variant X2, mRNA.
ACCESSION   XM_006239064
VERSION     XM_006239064.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006239064.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006239064.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3557
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3557
                     /gene="Ptafr"
                     /note="platelet-activating factor receptor; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 16 ESTs, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     49 samples with support for all annotated introns"
                     /db_xref="GeneID:58949"
                     /db_xref="RGD:61897"
     CDS             339..1364
                     /gene="Ptafr"
                     /codon_start=1
                     /product="platelet-activating factor receptor isoform X1"
                     /protein_id="XP_006239126.1"
                     /db_xref="GeneID:58949"
                     /db_xref="RGD:61897"
                     /translation="MEQNGSFRVDSEFRYTLFPIVYSVIFVLGVVANGYVLWVFATLY
                     PSKKLNEIKIFMVNLTVADLLFLMTLPLWIVYYSNEGDWIVHKFLCNLAGCLFFINTY
                     CSVAFLGVITYNRYQAVAYPIKTAQATTRKRGITLSLVIWISIAATASYFLATDSTNV
                     VPKKDGSGNITRCFEHYEPYSVPILVVHIFITSCFFLVFFLIFYCNMVIIHTLLTRPV
                     RQQRKPEVKRRALWMVCTVLAVFVICFVPHHVVQLPWTLAELGYQTNFHQAINDAHQI
                     TLCLLSTNCVLDPVIYCFLTKKFRKHLSEKFYSMRSSRKCSRATSDTCTEVMMPANQT
                     PVLPLKN"
ORIGIN      
        1 ctgattcgag attttctaga gatagtcatg ggtatccccc taatgggagc cagacccaag
       61 agaaggaagg aacttcctgt gtgacttgtg ggtagagaca tgatttcccc acagatacag
      121 agtgagtgcc ccgagctgcc cagctgtgga ctgcagccac tccctgccct tctcagagag
      181 ctagaccaga tgtgcttccc acctcaggag cacccccagt caggacagag aagaggatca
      241 gaagaagggg ctgggactgt gggacagaga catgcacatt ttctcatccc tgggacatac
      301 aacgttccat gaccaggtga cccttcctgc ccagagcaat ggagcaaaat ggctccttcc
      361 gtgtggattc tgagtttcga tacaccctct ttccgatcgt ttacagcgtc atctttgtac
      421 tgggcgtggt tgccaatggc tatgtgctgt gggtctttgc caccttgtac ccgtccaaga
      481 aactgaatga gataaagatc ttcatggtga atctcaccgt ggcggacctg ctcttcttga
      541 tgaccctccc gctgtggatt gtctattact ccaacgaggg cgactggatt gtacacaaat
      601 tcctgtgcaa cctggctggc tgcctcttct tcatcaatac ctactgcagt gtggccttcc
      661 ttggcgtcat cacttataac cgctaccagg cagtagccta tcccatcaag accgcccagg
      721 ccaccacccg caagcgtggc atcactttgt ccctggtcat ttggatatcc atcgcggcta
      781 ctgcatccta cttcctggcc acagactcta ccaacgtggt gcccaaaaag gatggctcag
      841 gtaacatcac ccgctgcttt gagcattatg agccatacag tgtgcccatc cttgtcgtcc
      901 acatcttcat cacctcctgt ttcttcctcg tcttcttcct catcttctac tgcaacatgg
      961 tcatcatcca cacgctgctc acgcggcctg tgcggcagca gcgcaaaccg gaagtgaagc
     1021 gccgggcgct gtggatggtc tgcactgtct tggcggtatt tgtcatctgc tttgtgcccc
     1081 atcacgtggt ccagctaccc tggaccctag cagagttggg ctaccagacc aacttccatc
     1141 aggctattaa tgatgcccac caaatcaccc tctgcctcct gagcaccaac tgcgtcttag
     1201 atcctgttat ctactgcttt ctcaccaaga agttccggaa gcacctcagc gaaaagtttt
     1261 acagcatgcg aagtagccgg aagtgctccc gagccactag cgacacgtgc accgaggtga
     1321 tgatgccagc caaccagact cctgtcctgc cattgaaaaa ttaatcaatg cttattaaag
     1381 ccaggtccag agccttctct tttatggccc ccaccgatgg cgcagaaagc taagaggttc
     1441 ctgcctgtgg ccaaccccca acttggaccc tggtggactc ttaagtgagg cagttacttc
     1501 ctcacagaga gccatttgct ggaaaataca gaactccaat gctccttttc atccatcttt
     1561 gagtcaacac tagagggttg tggctgatgg actcatccag ggcttcagat tgtgacaacc
     1621 ctgctagcac cagaccttgg ggagagacgc tgagcagccc agttcattca actgggacag
     1681 caatttaagg attgggcagt gacttccggg tgctacagga agaggggaga ggggttgtgg
     1741 ggactcttca ctgattgtga tctttggcaa aacaattggg tttaggatgg tgccttcctt
     1801 tatccatcta cagatacaag gtctttgtgg ctcttcctag aggaagtggt ttggtggtta
     1861 tcgcctgact cacccagcac cttgcctcag acataaccag aggagataac acagacgctg
     1921 accagaagct aggatgggtg catgtttgct gaggcagctg agttttgccc gggcctgagt
     1981 gagtgctgag ggaatggaag agaggtggct acctcagaac actgcacttt ccacttccgg
     2041 caggcagctt cttttgaggt cctctggcca cctggtggtg attttttgac aagtgtctta
     2101 gtctcatttc actcaccgtg cccagaaaac aactcgagga gggagagatt tattttggct
     2161 cacagtttgg aggacctcag tccctcacgg caaggaaggc atggtggggc tcagactctg
     2221 gtggtgggaa taggagacgg aggttgtcca cgtggcagtg agccaggaac caagactgca
     2281 ccttaaccca gggttgggat ataacccacg cccccgcgcc cccagccacc tacttctaca
     2341 gccaggtcct acctcctcct aaaggttcca cagtctcccg acctagagag cacggccctg
     2401 ggccagtgag atggtcgtgg agggtagaga gcacttgcag ctaacactgc tgatcagagt
     2461 ttgatcccag aagccacatg gtacaaagag agaacagatt tctgcaagtt gtcctttgac
     2521 ctttgctttc atgctgcggc acacacatgt cccgcctccc ccatatacat ataaataaat
     2581 gtacaaaatt aataggataa agcaaaacga atatgacccc ataggagtat acatgaaacg
     2641 gcaggtgtat tcaaaacata cctgctattt catttaagtg agatcccccc cggccctctg
     2701 agaagtatcc agaagcctca gactcagaac tctgaggacc ttttcctgtt ttcctgagcc
     2761 ttgtgctttc gagtgtctcc ttgaagctgg gtcaattgct tcctgtctgc tagacaagca
     2821 taggcttgtt ccaacggaca agcttgagtt tggaatgatg acggcagtct ggatctagct
     2881 gaaggggaca aagtggctaa aacaacttga acttcgtaga catcttacaa acccgggttc
     2941 aagtcttgcc tgtgctgaat gttgcttagg acgtgggaat ataattttct acctcttggt
     3001 gttgttagct gggaggttca acctacctca cgggacttct gggcagtgcg tgttcagctg
     3061 actctgggct atttatccct atcctcccct ttgctgggaa tttggtgccc tcgatccttg
     3121 gtttagaact gaaggggtga gggttagatg tctggatgcg gggtgcacct tttggggagc
     3181 tgtgaccatg tttacatgtg aagtgggttg ggtggccacc taggtgactg gtagatagaa
     3241 gtggcttttc aaagaaatca ggttagacca gacagaagct agaacgtggc gagaacactc
     3301 agcttcagag gggccagcag gcacgtcccc ggtgctttct cttgcgtccc gggaggttct
     3361 tgtcaggatt ccttctctct ccttccctaa gctcattgaa atggttgtct agtgctttca
     3421 atcaaataac atcctctgcc tctgtgttaa tatgatatag tctgaatttc atcgtctgca
     3481 aatctccctt gccactggtt tgcaatatcc atttaccaca gtaggtttgc ttaataaaca
     3541 tttttctctt caaatta
//
