LOCUS       NM_001271229            1138 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus phosphoseryl-tRNA kinase (Pstk), mRNA.
ACCESSION   NM_001271229 XM_003748995 XM_003753364
VERSION     NM_001271229.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1138)
  AUTHORS   Lau,N.C., Seto,A.G., Kim,J., Kuramochi-Miyagawa,S., Nakano,T.,
            Bartel,D.P. and Kingston,R.E.
  TITLE     Characterization of the piRNA complex from rat testes
  JOURNAL   Science 313 (5785), 363-367 (2006)
   PUBMED   16778019
REFERENCE   2  (bases 1 to 1138)
  AUTHORS   Carlson,B.A., Xu,X.M., Kryukov,G.V., Rao,M., Berry,M.J.,
            Gladyshev,V.N. and Hatfield,D.L.
  TITLE     Identification and characterization of phosphoseryl-tRNA[Ser]Sec
            kinase
  JOURNAL   Proc Natl Acad Sci U S A 101 (35), 12848-12853 (2004)
   PUBMED   15317934
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Sep 9, 2012 this sequence version replaced
            XM_003753364.1, XM_003748995.1.
            
            Sequence Note: This RefSeq record was created from genomic sequence
            data because no single transcript from the same strain was
            available for the full length of the gene. The extent of this
            transcript is supported by transcript alignments and orthologous
            data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.329914.1,
                                           SRR26360194.1227756.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-252               JAXUCZ010000001.1  195587911-195588162
            253-547             JAXUCZ010000001.1  195590315-195590609
            548-746             JAXUCZ010000001.1  195590844-195591042
            747-822             JAXUCZ010000001.1  195594457-195594532
            823-916             JAXUCZ010000001.1  195595028-195595121
            917-1138            JAXUCZ010000001.1  195598105-195598326
FEATURES             Location/Qualifiers
     source          1..1138
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q41"
     gene            1..1138
                     /gene="Pstk"
                     /gene_synonym="RGD1564300"
                     /note="phosphoseryl-tRNA kinase"
                     /db_xref="GeneID:361661"
                     /db_xref="RGD:1564300"
     exon            1..252
                     /gene="Pstk"
                     /gene_synonym="RGD1564300"
                     /inference="alignment:Splign:2.1.0"
     CDS             37..1116
                     /gene="Pstk"
                     /gene_synonym="RGD1564300"
                     /EC_number="2.7.1.164"
                     /codon_start=1
                     /product="L-seryl-tRNA(Sec) kinase"
                     /protein_id="NP_001258158.1"
                     /db_xref="GeneID:361661"
                     /db_xref="RGD:1564300"
                     /translation="MRTAAGYGATHSDGRPKLGLCVLCGLPAAGKSTFARALALRLQR
                     ERGWAVAVLSYDDVLPLALPDGAGTQPRPSQWKMFRQELLKHLECFLVAVITGAQMSA
                     PPNRTEAMWEDFITCLKRQDLMIFSEALEAQPCHLLAKPAVFRPLFLVLDDNFYYQSM
                     RYEVYQLARKYSLGFCQIFLDCPVETCLKRNGQRPQPLPDETIQLMERKIEKPNPEKN
                     AWEHNSLVIQSSACSSEASLEVTDLLLTALENPIKCVEDNTEQKETDRIICSTNILHK
                     ADETLRRTISQTMREAKDEQIPPTNLKRLAEELNKLKADVLEDLRQGDRKYLCFQQTT
                     DLPDVISSFCKERDTIVQKYFSKQH"
     exon            253..547
                     /gene="Pstk"
                     /gene_synonym="RGD1564300"
                     /inference="alignment:Splign:2.1.0"
     exon            548..746
                     /gene="Pstk"
                     /gene_synonym="RGD1564300"
                     /inference="alignment:Splign:2.1.0"
     exon            747..822
                     /gene="Pstk"
                     /gene_synonym="RGD1564300"
                     /inference="alignment:Splign:2.1.0"
     exon            823..916
                     /gene="Pstk"
                     /gene_synonym="RGD1564300"
                     /inference="alignment:Splign:2.1.0"
     exon            917..1138
                     /gene="Pstk"
                     /gene_synonym="RGD1564300"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgggcgcaa aggttcctgg agaccgcatc aagggcatga gaaccgcagc aggttatggg
       61 gctactcaca gcgacgggcg gcctaagctg ggactgtgcg tcctctgcgg cttgccggcg
      121 gccggaaagt cgacttttgc tcgtgctctg gctctgcggt tgcagcggga gcggggttgg
      181 gccgtagccg tcctctccta tgacgatgtg ctgcctcttg cgctcccgga cggcgcgggc
      241 acacagcctc ggccatccca gtggaaaatg ttccgacaag aactgttaaa gcacctggaa
      301 tgcttcttgg tagcggtcat cactggggct cagatgtctg ccccacccaa caggactgag
      361 gccatgtggg aagattttat aacctgctta aaaaggcagg atttgatgat cttttctgaa
      421 gcgctagagg cccagccttg ccatctcttg gcaaaacctg ctgtttttag acctttgttt
      481 ttggtgttag atgacaactt ttattaccaa agtatgagat atgaagtcta ccaactggct
      541 cggaaatatt cactaggctt ttgccagatc tttttagatt gtcccgtgga aacatgtttg
      601 aagaggaatg gccagagacc ccaaccactg ccagatgaga ccatccagct catggagaga
      661 aagatagaaa aacccaaccc tgagaaaaac gcctgggaac acaacagcct cgtaattcag
      721 agttcagcct gttcttcgga agccagcctg gaggtgactg atttgttgct tactgctttg
      781 gaaaatccca taaaatgtgt tgaggataat acggaacaaa aggaaactga cagaataatc
      841 tgttctacta acatccttca taaagctgat gagaccctcc gaagaaccat ctctcagacg
      901 atgagggaag ccaaagatga acaaatacct cctactaacc tgaagcgtct agcagaagaa
      961 cttaacaagc tcaaagcaga tgtgttagaa gatctaagac aaggagacag aaaatacctg
     1021 tgctttcagc aaaccaccga cttaccagat gttatttctt ctttttgtaa ggagagagat
     1081 accattgtgc agaagtattt ttcaaagcaa cattaaactt tctgaatttc tagtaaaa
//
