LOCUS       NM_001025672            2004 bp    mRNA    linear   ROD 15-JUN-2024
DEFINITION  Rattus norvegicus paraspeckle component 1 (Pspc1), mRNA.
ACCESSION   NM_001025672 XM_224234
VERSION     NM_001025672.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Morchikh,M., Cribier,A., Raffel,R., Amraoui,S., Cau,J., Severac,D.,
            Dubois,E., Schwartz,O., Bennasser,Y. and Benkirane,M.
  TITLE     HEXIM1 and NEAT1 Long Non-coding RNA Form a Multi-subunit Complex
            that Regulates DNA-Mediated Innate Immune Response
  JOURNAL   Mol Cell 67 (3), 387-399 (2017)
   PUBMED   28712728
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Kowalska,E., Ripperger,J.A., Muheim,C., Maier,B., Kurihara,Y.,
            Fox,A.H., Kramer,A. and Brown,S.A.
  TITLE     Distinct roles of DBHS family members in the circadian
            transcriptional feedback loop
  JOURNAL   Mol Cell Biol 32 (22), 4585-4594 (2012)
   PUBMED   22966205
REFERENCE   3  (bases 1 to 2004)
  AUTHORS   Zhang,B., Arun,G., Mao,Y.S., Lazar,Z., Hung,G., Bhattacharjee,G.,
            Xiao,X., Booth,C.J., Wu,J., Zhang,C. and Spector,D.L.
  TITLE     The lncRNA Malat1 is dispensable for mouse development but its
            transcription plays a cis-regulatory role in the adult
  JOURNAL   Cell Rep 2 (1), 111-123 (2012)
   PUBMED   22840402
REFERENCE   4  (bases 1 to 2004)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   5  (bases 1 to 2004)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   6  (bases 1 to 2004)
  AUTHORS   Clemson,C.M., Hutchinson,J.N., Sara,S.A., Ensminger,A.W., Fox,A.H.,
            Chess,A. and Lawrence,J.B.
  TITLE     An architectural role for a nuclear noncoding RNA: NEAT1 RNA is
            essential for the structure of paraspeckles
  JOURNAL   Mol Cell 33 (6), 717-726 (2009)
   PUBMED   19217333
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001025672.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC099204.1, SRR26643297.45218.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-509               JAXUCZ010000015.1  35026320-35026828   c
            510-811             JAXUCZ010000015.1  35019055-35019356   c
            812-907             JAXUCZ010000015.1  35012154-35012249   c
            908-1104            JAXUCZ010000015.1  35010603-35010799   c
            1105-1189           JAXUCZ010000015.1  35008548-35008632   c
            1190-1295           JAXUCZ010000015.1  34993734-34993839   c
            1296-1353           JAXUCZ010000015.1  34973550-34973607   c
            1354-1523           JAXUCZ010000015.1  34969988-34970157   c
            1524-2004           JAXUCZ010000015.1  34967477-34967957   c
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p12"
     gene            1..2004
                     /gene="Pspc1"
                     /note="paraspeckle component 1"
                     /db_xref="GeneID:305910"
                     /db_xref="RGD:1310122"
     exon            1..509
                     /gene="Pspc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             141..1709
                     /gene="Pspc1"
                     /note="paraspeckle protein 1"
                     /codon_start=1
                     /product="paraspeckle component 1"
                     /protein_id="NP_001020843.1"
                     /db_xref="GeneID:305910"
                     /db_xref="RGD:1310122"
                     /translation="MMLRGNLKQVRIEKNPARLRALESAAGESEPVAAAAMALTLAGE
                     QPPPPAPSEEHPDEEMGFTIDIKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFE
                     RYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVK
                     NLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDG
                     AFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFEFEYAS
                     RWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLMRQDLMRRQEELRRLE
                     ELRNQELQKRKQIQLRHEEEHRRREEEMIRHREQEELRRQQEGFKPNYMENREQEMRM
                     GDMGPRGAINMGDAFSPAPAGTQGPPPMMGMNMNNRGTIPGPPMGPGPAMGPEGAANM
                     GTPMIPDNGAVHNDRFPQGPPSQMGSPMGNRTGSETPQAPMSAVGPVSGGPGGFGRGS
                     QGGNFEGPNKRRRY"
     exon            510..811
                     /gene="Pspc1"
                     /inference="alignment:Splign:2.1.0"
     exon            812..907
                     /gene="Pspc1"
                     /inference="alignment:Splign:2.1.0"
     exon            908..1104
                     /gene="Pspc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1105..1189
                     /gene="Pspc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1190..1295
                     /gene="Pspc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1296..1353
                     /gene="Pspc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1354..1523
                     /gene="Pspc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1524..2004
                     /gene="Pspc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccaccgcgg gcgtgattgc ggggaggctg ggctcccctc ctttaccagg ctttccttgc
       61 ttcgtttcca tagctatatg tggagacgtg ggtacacaga cgtctaggcg gtatccagca
      121 tcccaagcga accagctaaa atgatgttaa gaggaaacct gaagcaagta cgtattgaga
      181 aaaatccggc tcgccttcgc gccctggagt cggcggccgg agagagcgag ccggtggccg
      241 cggcggccat ggcgctgacg ctggccgggg agcagccgcc gccacccgct ccttcggagg
      301 agcacccgga cgaggagatg ggcttcacca ttgacatcaa gagtttcctc aagcccggcg
      361 agaagacgta cacgcagcgc tgccgcctct tcgtgggtaa cctgcccacc gacatcacgg
      421 aggaggactt caagcggctc tttgagcgct acggcgagcc cagcgaggtt ttcatcaacc
      481 gcgaccgagg cttcggcttc atccgcctgg aatccagaac actggctgaa attgcaaaag
      541 cagagttgga tggtaccata ctgaagagca gacctctccg aattcgcttt gctacacatg
      601 gagcagccct aacagtcaag aacctgtctc cagttgtttc caatgagctt ctagagcaag
      661 cattttccca gtttggtcca gtagagaaag ctgtcgtggt tgtggatgat cgtggtagag
      721 ctacaggaaa aggttttgta gaatttgcag cgaaacctcc tgcacgaaag gctctggaga
      781 gatgtggtga tggggcgttc ttgctaacaa caacacctcg tccagtcatt gtagaaccca
      841 tggagcagtt tgatgatgaa gatggtttgc cagagaagct aatgcagaaa actcaacagt
      901 accataagga aagagaacag ccaccacggt ttgctcaacc tgggacattt gaatttgaat
      961 atgcatctcg atggaaggct ctggatgaaa tggagaagca gcagcgtgaa caagttgata
     1021 gaaacatcag agaagccaag gagaaactgg aggcagagat ggaagccgct agacatgaac
     1081 accagttaat gctaatgagg caagatctaa tgagacgtca agaagaactc agacgcttgg
     1141 aagaactcag aaatcaagaa ctgcagaaac gaaagcaaat acaactgaga catgaagagg
     1201 aacatcgtcg tcgtgaagaa gaaatgatca gacacagaga acaggaggaa ctgaggcgac
     1261 agcaggaggg ctttaaacca aactatatgg aaaatagaga acaggaaatg agaatgggtg
     1321 atatgggtcc ccgtggagca ataaacatgg gagatgcatt tagcccagca cctgctggta
     1381 cccaagggcc tcctccaatg atgggtatga atatgaacaa cagaggaact atacctggcc
     1441 caccaatggg tcctggtcct gccatgggac cagaaggagc tgcaaatatg ggaactccaa
     1501 tgataccaga taatggcgca gtgcacaatg ataggtttcc ccaaggtcct ccatcccaaa
     1561 tgggttcgcc tatgggaaac agaacaggtt ctgaaacccc ccaggcacca atgagtgctg
     1621 tagggcctgt gagtggtggt cctggtggct ttggcagagg gagtcaaggg ggcaattttg
     1681 aaggccctaa taagcgtcgg agatattaaa attctttcat tcctggctgt ttagaaaaaa
     1741 attcaatgac tttacacctt gtctgttacg cgggagaaat ggttttattg ttaatgtatg
     1801 tagactgaag tttttctttt gtaaaacggg gttttttttt tgtattttct ttattcataa
     1861 gctttgtaga ttagcttagt ggaaaagatg cccatcattg tgaatgttga aatgtgtttg
     1921 tgaccttagc tatggatagc tatgtggcat tattattaaa tctatgtagt tacttaatct
     1981 caataaagaa acgattttgc ctaa
//
