LOCUS       NM_001166016             838 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus psoriasis susceptibility 1 candidate 2
            (Psors1c2), mRNA.
ACCESSION   NM_001166016 XM_001073115
VERSION     NM_001166016.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Hurt,P., Walter,L., Sudbrak,R., Klages,S., Muller,I., Shiina,T.,
            Inoko,H., Lehrach,H., Gunther,E., Reinhardt,R. and Himmelbauer,H.
  TITLE     The genomic sequence and comparative analysis of the rat major
            histocompatibility complex
  JOURNAL   Genome Res 14 (4), 631-639 (2004)
   PUBMED   15060004
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Sep 22, 2022 this sequence version replaced NM_001166016.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643294.60211.1,
                                           SRR22582416.1510244.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-94                JAXUCZ010000020.1  3208214-3208307     c
            95-838              JAXUCZ010000020.1  3206886-3207629     c
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..838
                     /gene="Psors1c2"
                     /gene_synonym="Pcg; Spr1"
                     /note="psoriasis susceptibility 1 candidate 2"
                     /db_xref="GeneID:686254"
                     /db_xref="RGD:1591981"
     exon            1..94
                     /gene="Psors1c2"
                     /gene_synonym="Pcg; Spr1"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..444
                     /gene="Psors1c2"
                     /gene_synonym="Pcg; Spr1"
                     /codon_start=1
                     /product="psoriasis susceptibility 1 candidate gene 2
                     protein precursor"
                     /protein_id="NP_001159488.1"
                     /db_xref="GeneID:686254"
                     /db_xref="RGD:1591981"
                     /translation="MMLNWKLLGLLVLCLFAGGISGSDDPSPKSTDTQEENSPPLPLG
                     PPIPGDPWPGAPPLFDEPPPPGSNRPWRDLPDSGAWPPKPPSTDPPKPPLPDDPWPAG
                     TQPPENPWPPAPEMDSESQEEPDLDPPREEYR"
     exon            95..838
                     /gene="Psors1c2"
                     /gene_synonym="Pcg; Spr1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agactcagag caccccacct tgggggccag gacacagcca tgatgctcaa ttggaagctg
       61 ctcggcctgc tggtcctttg cctatttgca ggaggcatct caggcagtga cgacccctct
      121 cccaaatcca cagacaccca agaagagaac tccccaccat tgcctctggg acccccaatc
      181 cctggtgatc cctggccagg ggcacctcct ctgtttgatg agcctcctcc tccaggctcc
      241 aaccgtccct ggagagatct tcctgacagt ggtgcctggc cccctaagcc cccgagcact
      301 gatcccccta aacctcctct gcccgatgat ccctggccag cagggaccca gcccccagaa
      361 aatccctggc ctcctgcccc tgagatggac agtgaatctc aggaggagcc agaccttgac
      421 ccaccccggg aagagtatag atagggtacc ccagagaact tgagcctcct cagagcacac
      481 ccaagcccac ctctttcttt cttcgtctgc ccctttagaa tctcaatttt ccctaattcc
      541 ttcgttccct tcctcagtct ctggttggat tgtgttctgt gttggaagcg tccatgctct
      601 gcaccaccct ctctccacct tgcggtccgt gttcaacccc cacgttgtcc ctctgcttct
      661 ctcgatcagc agaaagcaca ctcctacctc actcaacctg ttctcgctcg gctagacctg
      721 gacttctagg gagagcctga gctcggtgct cactgctgcc acctggtgtc cttagctggg
      781 aactgacagt ggcccaggat ggtgcttcca gtggaaaaat aaaagcctcg ttttcttc
//
