LOCUS       NM_198730               1410 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus proteasome 26S subunit, non-ATPase 6 (Psmd6),
            mRNA.
ACCESSION   NM_198730 XM_214136
VERSION     NM_198730.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1410)
  AUTHORS   Wang,X., Chen,C.F., Baker,P.R., Chen,P.L., Kaiser,P. and Huang,L.
  TITLE     Mass spectrometric characterization of the affinity-purified human
            26S proteasome complex
  JOURNAL   Biochemistry 46 (11), 3553-3565 (2007)
   PUBMED   17323924
REFERENCE   2  (bases 1 to 1410)
  AUTHORS   Gomes,A.V., Zong,C., Edmondson,R.D., Li,X., Stefani,E., Zhang,J.,
            Jones,R.C., Thyparambil,S., Wang,G.W., Qiao,X., Bardag-Gorce,F. and
            Ping,P.
  TITLE     Mapping the murine cardiac 26S proteasome complexes
  JOURNAL   Circ Res 99 (4), 362-371 (2006)
   PUBMED   16857966
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Mar 16, 2021 this sequence version replaced NM_198730.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ214459.1, FQ212955.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-222               JAXUCZ010000015.1  13532675-13532896
            223-428             JAXUCZ010000015.1  13533434-13533639
            429-574             JAXUCZ010000015.1  13536658-13536803
            575-794             JAXUCZ010000015.1  13536992-13537211
            795-903             JAXUCZ010000015.1  13537335-13537443
            904-1072            JAXUCZ010000015.1  13540460-13540628
            1073-1150           JAXUCZ010000015.1  13542231-13542308
            1151-1410           JAXUCZ010000015.1  13542423-13542682
FEATURES             Location/Qualifiers
     source          1..1410
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p16"
     gene            1..1410
                     /gene="Psmd6"
                     /gene_synonym="P44s10"
                     /note="proteasome 26S subunit, non-ATPase 6"
                     /db_xref="GeneID:289924"
                     /db_xref="RGD:735127"
     exon            1..222
                     /gene="Psmd6"
                     /gene_synonym="P44s10"
                     /inference="alignment:Splign:2.1.0"
     CDS             78..1247
                     /gene="Psmd6"
                     /gene_synonym="P44s10"
                     /note="proteasome, 26S, non-ATPase regulatory subunit 6;
                     proteasome regulatory particle subunit p44S10; proteasome
                     (prosome, macropain) 26S subunit, non-ATPase, 6"
                     /codon_start=1
                     /product="26S proteasome non-ATPase regulatory subunit 6"
                     /protein_id="NP_942025.1"
                     /db_xref="GeneID:289924"
                     /db_xref="RGD:735127"
                     /translation="MPLENLEEEGLPKNPDLRIAQLRFLLSLPEHRGDTAVREELMAA
                     VRENNMAPYYEALCKSLDWQMDMDLLSKMKKANEEELKRLDEELEDAEKNLGESEIRD
                     AMMAKAEYLCQIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRN
                     TEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKT
                     FVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLA
                     VVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQEL
                     SRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM"
     exon            223..428
                     /gene="Psmd6"
                     /gene_synonym="P44s10"
                     /inference="alignment:Splign:2.1.0"
     exon            429..574
                     /gene="Psmd6"
                     /gene_synonym="P44s10"
                     /inference="alignment:Splign:2.1.0"
     exon            575..794
                     /gene="Psmd6"
                     /gene_synonym="P44s10"
                     /inference="alignment:Splign:2.1.0"
     exon            795..903
                     /gene="Psmd6"
                     /gene_synonym="P44s10"
                     /inference="alignment:Splign:2.1.0"
     exon            904..1072
                     /gene="Psmd6"
                     /gene_synonym="P44s10"
                     /inference="alignment:Splign:2.1.0"
     exon            1073..1150
                     /gene="Psmd6"
                     /gene_synonym="P44s10"
                     /inference="alignment:Splign:2.1.0"
     exon            1151..1410
                     /gene="Psmd6"
                     /gene_synonym="P44s10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttgcgacgac tcctcctgct tccgctggtg gcccaggact actctcagtt ttctcagctt
       61 gctcttgtac cgtgaccatg ccgctagaaa acctagagga agagggtctg cccaagaacc
      121 cggatctgcg catcgcgcag ctgcgctttc tgcttagcct gccggagcac cgcggggaca
      181 cggcggtgcg cgaggagctg atggccgccg tccgggaaaa caatatggct ccttattatg
      241 aagccttgtg taaatccctc gactggcaga tggacatgga tctcctcagt aaaatgaaga
      301 aagcaaacga ggaagagttg aaacgtctgg atgaggagtt ggaggatgca gagaagaatc
      361 tgggagaaag tgaaattcga gatgcaatga tggcaaaagc agagtacctc tgtcagatag
      421 gtgacaagga gggagctctg acagcctttc gcaagacata tgataagact gtggccctgg
      481 gtcaccgact agatattgta ttctatctcc taaggattgg actcttttat atggataatg
      541 acctcatcac tcgaaacaca gaaaaggcca aaagccttat agaggaaggc ggagactggg
      601 accggcgaaa caggctgaaa gtgtatcaag gcttgtattg tgtggctatc cgtgacttca
      661 aacaggcagc agagctcttt cttgacaccg tttctacatt tacgtcctat gagctcatgg
      721 attacaagac atttgtgact tacactgttt atgtcagtat gattgcctta gaaagaccag
      781 atctcagaga aaaggtcatc aaaggggcag agattcttga agtgttgcac agtctcccgg
      841 cagttcggca gtatctgttt tctctctatg aatgccgtta ctccgttttc ttccagtcgt
      901 tagcggtcgt agagcaggag atgaaaaagg actggctttt tgcgcctcat taccgatact
      961 atgtgagaga aatgcggatc catgcataca gccagctgct ggagtcatat aggtcattaa
     1021 cccttggcta tatggcagaa gcatttggtg tgggtgtgga attcatcgac caggaactgt
     1081 ccaggtttat tgctgctgga agactacact gtaaaatcga taaagtaaat gaaatagtag
     1141 aaaccaacag acctgacagc aagaattggc agtaccaaga gaccatcaag aaaggagact
     1201 tgctgctgaa cagggttcag aaattatcca gagtaattaa catgtaaaac cactttaaaa
     1261 tgaattccct tacagatgtt acgtgaaagc ctttgtaact taagtcactg tgtgcccact
     1321 tctacagcat caaataaata tgacatgtgc ttgttaccgg ttctactaat gcctgttcag
     1381 ttattaataa aaaatgttct ttgtctttta
//
