LOCUS       NM_001106569            2071 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus proteasome 26S subunit, non-ATPase 5 (Psmd5),
            mRNA.
ACCESSION   NM_001106569 XM_001079109 XM_216041
VERSION     NM_001106569.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2071)
  AUTHORS   Roelofs,J., Park,S., Haas,W., Tian,G., McAllister,F.E., Huo,Y.,
            Lee,B.H., Zhang,F., Shi,Y., Gygi,S.P. and Finley,D.
  TITLE     Chaperone-mediated pathway of proteasome regulatory particle
            assembly
  JOURNAL   Nature 459 (7248), 861-865 (2009)
   PUBMED   19412159
REFERENCE   2  (bases 1 to 2071)
  AUTHORS   Kaneko,T., Hamazaki,J., Iemura,S., Sasaki,K., Furuyama,K.,
            Natsume,T., Tanaka,K. and Murata,S.
  TITLE     Assembly pathway of the Mammalian proteasome base subcomplex is
            mediated by multiple specific chaperones
  JOURNAL   Cell 137 (5), 914-925 (2009)
   PUBMED   19490896
REFERENCE   3  (bases 1 to 2071)
  AUTHORS   Gomes,A.V., Zong,C., Edmondson,R.D., Li,X., Stefani,E., Zhang,J.,
            Jones,R.C., Thyparambil,S., Wang,G.W., Qiao,X., Bardag-Gorce,F. and
            Ping,P.
  TITLE     Mapping the murine cardiac 26S proteasome complexes
  JOURNAL   Circ Res 99 (4), 362-371 (2006)
   PUBMED   16857966
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1 and BC166850.1.
            
            On Sep 30, 2011 this sequence version replaced NM_001106569.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166850.1, SRR22399481.162943.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840105,
                                           SAMN12840106 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-18                JAXUCZ010000003.1  38548473-38548490   c
            19-2071             BC166850.1         1-2053
FEATURES             Location/Qualifiers
     source          1..2071
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p11"
     gene            1..2071
                     /gene="Psmd5"
                     /note="proteasome 26S subunit, non-ATPase 5"
                     /db_xref="GeneID:296651"
                     /db_xref="RGD:1308434"
     exon            1..196
                     /gene="Psmd5"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..1538
                     /gene="Psmd5"
                     /note="proteasome (prosome, macropain) 26S subunit,
                     non-ATPase, 5"
                     /codon_start=1
                     /product="26S proteasome non-ATPase regulatory subunit 5"
                     /protein_id="NP_001100039.2"
                     /db_xref="GeneID:296651"
                     /db_xref="RGD:1308434"
                     /translation="MAAQAVSLLREVARLEAPLEELRALQSVVQAVPLHELREQAAEL
                     RLRPLFSLLNQNNREQTALCVSILERLLQAVEPIHLARNLRLDLQRGLTHPDDSVKTL
                     TLSQIGRIVEDSEAVTEVLSNAELLRQVVCCIGGENLSVAKAAIKSLSRISLTQAGLE
                     ALFESNLLDDLKNVMKTNDVVRYRVYELIIDISSVSSESLNYCTTSGLVTQLLRELTG
                     EDVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFSGFYLPGFVKF
                     FGNLAVMDSPQQICERYPVFLEKVFAMADSQDPTMIGVAVDTVGILGSSVEGKQVLQK
                     TGTRFERLLTRIGYQAKNASTELKIRCLDAVSSLLYLSPEQQTDDFLGMTESWFSSVS
                     RDSLELFRGISNQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEFVMDRSVEHDK
                     TSKDAKYELVKALANSKTVAEIFGNSNYLRLRTYLSEGPYYVKPVATTAVEGAD"
     exon            197..341
                     /gene="Psmd5"
                     /inference="alignment:Splign:2.1.0"
     exon            342..455
                     /gene="Psmd5"
                     /inference="alignment:Splign:2.1.0"
     exon            456..584
                     /gene="Psmd5"
                     /inference="alignment:Splign:2.1.0"
     exon            585..694
                     /gene="Psmd5"
                     /inference="alignment:Splign:2.1.0"
     exon            695..837
                     /gene="Psmd5"
                     /inference="alignment:Splign:2.1.0"
     exon            838..1029
                     /gene="Psmd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1030..1139
                     /gene="Psmd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1140..1280
                     /gene="Psmd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1281..2042
                     /gene="Psmd5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgggcagac cggagccagc aagatggcgg cgcaggctgt atcactcctg cgggaggtgg
       61 cgcggctgga ggcgccgctg gaggagctgc gtgcgctgca gtccgtggtg caggctgtgc
      121 cgctccacga gcttcgcgag caggcggcgg agctacgcct tcgcccgctg ttctccttgc
      181 ttaaccagaa caatcgggaa cagactgctc tgtgtgtatc cattctggag aggttgctcc
      241 aggcagtgga accaattcat ttggccagga acctcaggct tgacctgcag aggggactga
      301 ctcaccctga tgactctgta aaaaccctca ccctctccca gattgggagg attgttgagg
      361 attcggaagc tgttactgag gtcctgagta atgctgaact cctgaggcag gttgtctgct
      421 gcattggtgg agagaattta tctgtggcta aagcggctat caaatccctg tcaagaatat
      481 cactaaccca agctggactg gaagctctat ttgaaagtaa tttgctggac gatttgaaaa
      541 atgtcatgaa aacaaatgat gttgttcgat acagggtgta tgagctaatt atagatattt
      601 cttctgtgtc atcagaatcg ttaaattact gtaccacaag tggactggtg acccagctcc
      661 tgagagagct gacgggtgag gacgtgttag tcagagccac ctgtatcgaa atggtgacat
      721 cactagcata tacccatcat ggacgacaat acttggctca agaaggagtc attgaccaga
      781 tatccaatat aattgttggt gcagattcag accctttctc tggcttctat ctgccaggat
      841 ttgtgaagtt ttttggaaac ctggctgtca tggatagtcc tcagcagatc tgtgagcgct
      901 accctgtctt tctggagaaa gtgtttgcaa tggcagacag tcaagacccc actatgattg
      961 gtgtggctgt agacacagtt ggaatcctgg gatccagtgt tgaagggaaa caagttttac
     1021 agaagacagg aacccgcttt gaacgcctcc tcacgagaat aggttatcaa gcaaagaatg
     1081 cttccacaga gctgaaaatt aggtgtttgg atgcagtttc ctctcttctg tacctatcac
     1141 ctgagcagca gactgatgac ttcctgggaa tgacagagtc ctggttttcc tccgtgtctc
     1201 gagactccct ggagctcttc cgtggtatca gtaaccagcc cttccctgaa ctacactgtg
     1261 ctgccttgaa agtgttcaca gctattgcaa accaaccctg ggctcagaaa cttatgttta
     1321 acagtccagg ttttgtggag tttgtgatgg accggtctgt ggaacatgac aaaacttcaa
     1381 aggatgcgaa atacgaactg gtaaaagcgc tcgccaattc caagacagtt gcagagatct
     1441 ttgggaactc aaattatttg aggctcagaa cgtacctaag tgaagggcca tactacgtga
     1501 aacctgttgc cacaacagcc gtagaaggag ctgactgatt ccgtctaaga cagaccagaa
     1561 tttctcaagg tacatgattc catccatgct ccactccgca ggatgtctgc cttcccagag
     1621 ctgtcatgga gtttcggaca cagtcttacc atcagcagtg tcgttcctac ttaaatgctg
     1681 tgtggacctg gtgcttggaa catagcgaaa gcagcaggag cctaagagca ctcgagcttt
     1741 tctgagtcct ctggctactg gagtctttgc tgcaaggtca aagactggtt ttctcaaagt
     1801 ttccatgggt acactcttga ccttgtttaa aactaaaatg aagccaaaat gattctggat
     1861 tctcttaacc atattttctt tttccttatc tgattttgcc tcaaaatctt gggtagtctc
     1921 taaaaactaa gtcatttaga atcatcggat tgtattattt gtatacagga ataaatagtt
     1981 ttaataagat ttcttggtta cttttccttt gaaaataaat taaaacttgt ttggcattgg
     2041 taaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//
