LOCUS       NM_031331               1334 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus proteasome 26S subunit ubiquitin receptor,
            non-ATPase 4 (Psmd4), mRNA.
ACCESSION   NM_031331
VERSION     NM_031331.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1334)
  AUTHORS   Puram SV, Kim AH, Park HY, Anckar J and Bonni A.
  TITLE     The ubiquitin receptor S5a/Rpn10 links centrosomal proteasomes with
            dendrite development in the mammalian brain
  JOURNAL   Cell Rep 4 (1), 19-30 (2013)
   PUBMED   23831032
REFERENCE   2  (bases 1 to 1334)
  AUTHORS   Huang Q, Wang H, Perry SW and Figueiredo-Pereira ME.
  TITLE     Negative regulation of 26S proteasome stability via
            calpain-mediated cleavage of Rpn10 subunit upon mitochondrial
            dysfunction in neurons
  JOURNAL   J Biol Chem 288 (17), 12161-12174 (2013)
   PUBMED   23508964
  REMARK    GeneRIF: Negative regulation of 26S proteasome stability via
            calpain-mediated cleavage of Rpn10 subunit upon mitochondrial
            dysfunction in neurons.
REFERENCE   3  (bases 1 to 1334)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 1334)
  AUTHORS   L'Heureux DZ, Rothman VL and Tuszynski GP.
  TITLE     The interaction of angiocidin with tissue transglutaminase
  JOURNAL   Exp Mol Pathol 88 (1), 15-25 (2010)
   PUBMED   19931242
REFERENCE   5  (bases 1 to 1334)
  AUTHORS   Yi H, Friedman JL and Ferreira PA.
  TITLE     The cyclophilin-like domain of Ran-binding protein-2 modulates
            selectively the activity of the ubiquitin-proteasome system and
            protein biogenesis
  JOURNAL   J Biol Chem 282 (48), 34770-34778 (2007)
   PUBMED   17911097
REFERENCE   6  (bases 1 to 1334)
  AUTHORS   Wang X, Chen CF, Baker PR, Chen PL, Kaiser P and Huang L.
  TITLE     Mass spectrometric characterization of the affinity-purified human
            26S proteasome complex
  JOURNAL   Biochemistry 46 (11), 3553-3565 (2007)
   PUBMED   17323924
REFERENCE   7  (bases 1 to 1334)
  AUTHORS   Hamazaki J, Iemura S, Natsume T, Yashiroda H, Tanaka K and Murata
            S.
  TITLE     A novel proteasome interacting protein recruits the
            deubiquitinating enzyme UCH37 to 26S proteasomes
  JOURNAL   EMBO J 25 (19), 4524-4536 (2006)
   PUBMED   16990800
REFERENCE   8  (bases 1 to 1334)
  AUTHORS   Gomes AV, Zong C, Edmondson RD, Li X, Stefani E, Zhang J, Jones RC,
            Thyparambil S, Wang GW, Qiao X, Bardag-Gorce F and Ping P.
  TITLE     Mapping the murine cardiac 26S proteasome complexes
  JOURNAL   Circ Res 99 (4), 362-371 (2006)
   PUBMED   16857966
REFERENCE   9  (bases 1 to 1334)
  AUTHORS   Davidson TS and Hickey WF.
  TITLE     Distribution and immunoregulatory properties of antisecretory
            factor
  JOURNAL   Lab Invest 84 (3), 307-319 (2004)
   PUBMED   14767482
  REMARK    GeneRIF: data suggest that antisecretory factor may have a
            previously unsuspected role in regulating the immune system
REFERENCE   10 (bases 1 to 1334)
  AUTHORS   Tateishi K, Misumi Y, Ikehara Y, Miyasaka K and Funakoshi A.
  TITLE     Molecular cloning and expression of rat antisecretory factor and
            its intracellular localization
  JOURNAL   Biochem Cell Biol 77 (3), 223-228 (1999)
   PUBMED   10505793
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB017188.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB017188.1, SRR8487226.54037.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMN06621351
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1334
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..1334
                     /gene="Psmd4"
                     /note="proteasome 26S subunit ubiquitin receptor,
                     non-ATPase 4"
                     /db_xref="GeneID:83499"
                     /db_xref="RGD:621109"
     exon            1..97
                     /gene="Psmd4"
                     /inference="alignment:Splign:2.1.0"
     CDS             72..1214
                     /gene="Psmd4"
                     /note="antisecretory factor; proteasome 26S subunit,
                     non-ATPase 4; proteasome (prosome, macropain) 26S subunit,
                     non-ATPase, 4"
                     /codon_start=1
                     /product="26S proteasome non-ATPase regulatory subunit 4"
                     /protein_id="NP_112621.1"
                     /db_xref="GeneID:83499"
                     /db_xref="RGD:621109"
                     /translation="MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSN
                     PENNVGLITLANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQG
                     KNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTL
                     NGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGASDFEFGVDPSADPELAL
                     ALRVSMEEQRQRQEEEARRAAAASAAEAGIATPGTEGERDSDDALLKMTISQQEFGRA
                     GLPDLSSMTEEEQIAYAMQMSLQGAEFGQAESGDIDASSAMDTSEPVKEEDDYDVMQD
                     PEFLQSVLENLPGVDPNNEAIRNAMGSLASQATKDGKKDKKEEEKK"
     exon            98..238
                     /gene="Psmd4"
                     /inference="alignment:Splign:2.1.0"
     exon            239..353
                     /gene="Psmd4"
                     /inference="alignment:Splign:2.1.0"
     exon            354..440
                     /gene="Psmd4"
                     /inference="alignment:Splign:2.1.0"
     exon            441..509
                     /gene="Psmd4"
                     /inference="alignment:Splign:2.1.0"
     exon            510..725
                     /gene="Psmd4"
                     /inference="alignment:Splign:2.1.0"
     exon            726..843
                     /gene="Psmd4"
                     /inference="alignment:Splign:2.1.0"
     exon            844..1043
                     /gene="Psmd4"
                     /inference="alignment:Splign:2.1.0"
     exon            1044..1334
                     /gene="Psmd4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagcgccagg ccaatcggag gtgctgttgt ttgtcagtcc cggagccggt ccgcaaagga
       61 aaggtggcaa gatggtgttg gagagcacta tggtttgtgt ggacaacagt gagtacatgc
      121 ggaatggaga cttccttccc acccggctgc aggcccagca ggatgctgtc aacattgtat
      181 gtcactcaaa gacccgaagc aaccctgaga ataacgtggg cttgatcacg ctggccaatg
      241 actgtgaggt gctgaccaca ctcacccctg acactggccg aatcctctcc aagctccaca
      301 ctgtccagcc caaaggcaag atcaccttct gcactggcat ccgcgtggcc catctggctc
      361 tgaagcaccg gcagggcaag aatcacaaga tgcgcatcat cgccttcgtg ggtagccctg
      421 tggaggacaa cgagaaggat ctggtgaaac tagctaaacg ccttaagaaa gaaaaagtga
      481 atgttgacat catcaatttt ggggaagagg aggtgaacac agagaagctg acagcctttg
      541 tgaacacatt aaacggcaag gacggaactg gatcacatct agtgacagtg cctcctgggc
      601 ccagcctggc cgatgctctc atcagttctc ctattctagc tggggaaggc ggcgccatgc
      661 tgggtcttgg tgccagtgac tttgagtttg gagtagatcc cagtgctgat cctgaattgg
      721 ccctggccct tcgtgtctct atggaagagc agcggcagcg gcaggaggag gaggcacgac
      781 gggctgctgc agcctctgca gctgaggctg gaattgccac acctgggact gaaggtgaac
      841 gagactcaga tgatgcccta ctgaagatga ccatcagcca gcaggagttt ggccgtgcgg
      901 ggcttcctga cctaagcagc atgacagagg aagagcagat tgcctatgcc atgcagatgt
      961 ccctgcaggg agcagagttt ggccaagcag aatcagggga catcgatgcc agctcagcca
     1021 tggacacatc tgagccagtc aaggaggagg atgactatga cgtgatgcag gacccagagt
     1081 tccttcagag cgtcctagag aaccttcccg gtgtggatcc caacaatgaa gccattcgaa
     1141 atgcaatggg ctctctggcc tcccaggcca ccaaggatgg caagaaggac aagaaagagg
     1201 aagagaagaa gtgaggccgg agggaggggt agccgagtct gccctgggga ctgtaaggat
     1261 ggggttggat aaagacttag atgtgctctg cggccttgac aacggaataa agcttggagt
     1321 tttccctttg cttc
//
