LOCUS       NM_001108925            1550 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus proteasome 26S subunit, non-ATPase 13 (Psmd13),
            mRNA.
ACCESSION   NM_001108925 XM_001058704 XM_344976
VERSION     NM_001108925.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1550)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   2  (bases 1 to 1550)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   3  (bases 1 to 1550)
  AUTHORS   Wang,X., Chen,C.F., Baker,P.R., Chen,P.L., Kaiser,P. and Huang,L.
  TITLE     Mass spectrometric characterization of the affinity-purified human
            26S proteasome complex
  JOURNAL   Biochemistry 46 (11), 3553-3565 (2007)
   PUBMED   17323924
REFERENCE   4  (bases 1 to 1550)
  AUTHORS   Gomes,A.V., Zong,C., Edmondson,R.D., Li,X., Stefani,E., Zhang,J.,
            Jones,R.C., Thyparambil,S., Wang,G.W., Qiao,X., Bardag-Gorce,F. and
            Ping,P.
  TITLE     Mapping the murine cardiac 26S proteasome complexes
  JOURNAL   Circ Res 99 (4), 362-371 (2006)
   PUBMED   16857966
REFERENCE   5  (bases 1 to 1550)
  AUTHORS   Terret,M.E., Wassmann,K., Waizenegger,I., Maro,B., Peters,J.M. and
            Verlhac,M.H.
  TITLE     The meiosis I-to-meiosis II transition in mouse oocytes requires
            separase activity
  JOURNAL   Curr Biol 13 (20), 1797-1802 (2003)
   PUBMED   14561405
REFERENCE   6  (bases 1 to 1550)
  AUTHORS   Hoffman,L., Gorbea,C. and Rechsteiner,M.
  TITLE     Identification, molecular cloning, and characterization of subunit
            11 of the human 26S proteasome
  JOURNAL   FEBS Lett 449 (1), 88-92 (1999)
   PUBMED   10225435
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC158732.1.
            
            On Jan 27, 2008 this sequence version replaced NM_001108925.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158732.1, FQ226487.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1550
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q41"
     gene            1..1550
                     /gene="Psmd13"
                     /note="proteasome 26S subunit, non-ATPase 13"
                     /db_xref="GeneID:365388"
                     /db_xref="RGD:1305236"
     exon            1..117
                     /gene="Psmd13"
                     /inference="alignment:Splign:2.1.0"
     CDS             23..1153
                     /gene="Psmd13"
                     /note="26S proteasome regulatory subunit RPN9; proteasome
                     (prosome, macropain) 26S subunit, non-ATPase, 13; 26S
                     proteasome regulatory subunit S11; 26S proteasome
                     regulatory subunit p40.5"
                     /codon_start=1
                     /product="26S proteasome non-ATPase regulatory subunit 13"
                     /protein_id="NP_001102395.1"
                     /db_xref="GeneID:365388"
                     /db_xref="RGD:1305236"
                     /translation="MKDVPAFLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDF
                     VQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTRE
                     KVKSSDEAVILCKTAIGALKLNIGDLQATKETIEDVEEMLNNLPGVTSVHSRFYDLSS
                     KYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLM
                     HPVLESLRNTDRQWLIDTLYAFNSGDVDRFQTLKSAWGQQPDLAANEAQLLRKIQLLC
                     LMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMT
                     WVQPRVLDLQQIKGMKDRLELWCTDVKSMELLVEHQAQDILT"
     exon            118..196
                     /gene="Psmd13"
                     /inference="alignment:Splign:2.1.0"
     exon            197..231
                     /gene="Psmd13"
                     /inference="alignment:Splign:2.1.0"
     exon            232..287
                     /gene="Psmd13"
                     /inference="alignment:Splign:2.1.0"
     exon            288..331
                     /gene="Psmd13"
                     /inference="alignment:Splign:2.1.0"
     exon            332..418
                     /gene="Psmd13"
                     /inference="alignment:Splign:2.1.0"
     exon            419..590
                     /gene="Psmd13"
                     /inference="alignment:Splign:2.1.0"
     exon            591..670
                     /gene="Psmd13"
                     /inference="alignment:Splign:2.1.0"
     exon            671..796
                     /gene="Psmd13"
                     /inference="alignment:Splign:2.1.0"
     exon            797..859
                     /gene="Psmd13"
                     /inference="alignment:Splign:2.1.0"
     exon            860..940
                     /gene="Psmd13"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1057
                     /gene="Psmd13"
                     /inference="alignment:Splign:2.1.0"
     exon            1058..1513
                     /gene="Psmd13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgttcccag ctctctttaa tcatgaagga tgtgccggcc ttcttacagc agagtcagag
       61 ctccgggccg ggccaggccg ccgtttggca ccgtttggaa gagctataca cgaagaagtt
      121 atggcatcag ctgacacttc aggtgcttga ttttgtgcag gacccatgct ttgcccaagg
      181 agatggcctc attaagctct atgaaaactt catcagtgaa tttgagcaca gggtaaaccc
      241 tttgtccctg gtagaaataa ttcttcatgt ggttagacag atgaccgatc ctaatgtggc
      301 tcttactttt ctggaaaaga ctcgtgagaa ggtaaaaagt agtgatgaag ccgtgatctt
      361 gtgtaagaca gcaatcggag ctctaaaatt gaacatcggg gatctgcagg ctacaaagga
      421 aaccattgaa gatgttgaag agatgctcaa caatctccct ggtgtgacgt cagttcacag
      481 tcgtttctac gatctctcca gtaaatacta tcaaacaatc ggaaaccacg cgtcctacta
      541 caaagatgcc ctacggtttc tgggctgtgt agacataaag gatctgccag tatcagaaca
      601 gcaagaaaga gccttcacac tggggcttgc tggacttctc ggagagggag tttttaactt
      661 tggagaactt ctcatgcatc ctgtgctgga gtcactgagg aacactgacc ggcagtggct
      721 gattgacacc ctgtatgctt tcaacagtgg tgatgtagat aggttccaga cactgaagtc
      781 tgcctggggc cagcagcctg acttagcagc caacgaggcc cagcttctga ggaagatcca
      841 gctgttgtgc cttatggaga tgacgttcac acggcctgcc aaccacagac aactcacttt
      901 tgaggaaatt gccaaaagtg ccaagatcac tgtcaacaag gtggagctgt tggtgatgaa
      961 ggcactctcg gtggggctgg tgagaggcag catagacgag gtggacaagc gggttcacat
     1021 gacgtgggtg cagcctcgag tgctggattt gcagcagatc aaggggatga aggaccgtct
     1081 ggagctctgg tgcactgatg tgaagagcat ggagctgctg gtagaacacc aggctcaaga
     1141 catcctcacc taacgcccca gggtcctgca gacccgcctc accctgcctc accctgcaag
     1201 gtgacccccg aaaccatcag cagagatctg tattcatttg ggatggagtt tgggatcctg
     1261 ctaggagtgg gaactgttct tgctataaat gcagagatct gtcactgatg ggggtgtgac
     1321 tacttggaga aggctcctgt gtggggtctt ttgtagcccg caagccgtgg gaggggggct
     1381 ccaggcctag gtgatgagga agggcatgaa tgggaatggg gacagagtag tctccaccca
     1441 aatccacctg agtggacctt tccagtgtgg tctgagagtg cttctataat aaatgccttt
     1501 gcattgttct gttaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
