LOCUS       NM_001394006            1632 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus proteasome 26S subunit, non-ATPase 11 (Psmd11),
            transcript variant 1, mRNA.
ACCESSION   NM_001394006
VERSION     NM_001394006.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Vilchez,D., Boyer,L., Morantte,I., Lutz,M., Merkwirth,C., Joyce,D.,
            Spencer,B., Page,L., Masliah,E., Berggren,W.T., Gage,F.H. and
            Dillin,A.
  TITLE     Increased proteasome activity in human embryonic stem cells is
            regulated by PSMD11
  JOURNAL   Nature 489 (7415), 304-308 (2012)
   PUBMED   22972301
REFERENCE   2  (bases 1 to 1632)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   3  (bases 1 to 1632)
  AUTHORS   Sasaki,K., Hamazaki,J., Koike,M., Hirano,Y., Komatsu,M.,
            Uchiyama,Y., Tanaka,K. and Murata,S.
  TITLE     PAC1 gene knockout reveals an essential role of chaperone-mediated
            20S proteasome biogenesis and latent 20S proteasomes in cellular
            homeostasis
  JOURNAL   Mol Cell Biol 30 (15), 3864-3874 (2010)
   PUBMED   20498273
REFERENCE   4  (bases 1 to 1632)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   5  (bases 1 to 1632)
  AUTHORS   Wang,X., Chen,C.F., Baker,P.R., Chen,P.L., Kaiser,P. and Huang,L.
  TITLE     Mass spectrometric characterization of the affinity-purified human
            26S proteasome complex
  JOURNAL   Biochemistry 46 (11), 3553-3565 (2007)
   PUBMED   17323924
REFERENCE   6  (bases 1 to 1632)
  AUTHORS   Gomes,A.V., Zong,C., Edmondson,R.D., Li,X., Stefani,E., Zhang,J.,
            Jones,R.C., Thyparambil,S., Wang,G.W., Qiao,X., Bardag-Gorce,F. and
            Ping,P.
  TITLE     Mapping the murine cardiac 26S proteasome complexes
  JOURNAL   Circ Res 99 (4), 362-371 (2006)
   PUBMED   16857966
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ225888.1, BC168749.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-130               JAXUCZ010000010.1  65932343-65932472
            131-232             JAXUCZ010000010.1  65935123-65935224
            233-357             JAXUCZ010000010.1  65942126-65942250
            358-429             JAXUCZ010000010.1  65949186-65949257
            430-487             JAXUCZ010000010.1  65949776-65949833
            488-682             JAXUCZ010000010.1  65960522-65960716
            683-827             JAXUCZ010000010.1  65963171-65963315
            828-888             JAXUCZ010000010.1  65965148-65965208
            889-951             JAXUCZ010000010.1  65966812-65966874
            952-1077            JAXUCZ010000010.1  65974513-65974638
            1078-1113           JAXUCZ010000010.1  65975016-65975051
            1114-1165           JAXUCZ010000010.1  65975253-65975304
            1166-1632           JAXUCZ010000010.1  65975776-65976242
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q26"
     gene            1..1632
                     /gene="Psmd11"
                     /note="proteasome 26S subunit, non-ATPase 11"
                     /db_xref="GeneID:303353"
                     /db_xref="RGD:1306450"
     exon            1..130
                     /gene="Psmd11"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..1308
                     /gene="Psmd11"
                     /note="26S proteasome regulatory subunit RPN6; proteasome
                     (prosome, macropain) 26S subunit, non-ATPase, 11"
                     /codon_start=1
                     /product="26S proteasome non-ATPase regulatory subunit 11"
                     /protein_id="NP_001380935.1"
                     /db_xref="GeneID:303353"
                     /db_xref="RGD:1306450"
                     /translation="MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQ
                     VKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAA
                     TGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKM
                     DDKALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIH
                     AAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLA
                     LRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQN
                     LIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPP
                     VDKTYEAALETIQNMSKVVDSLYNKAKKLT"
     exon            131..232
                     /gene="Psmd11"
                     /inference="alignment:Splign:2.1.0"
     exon            233..357
                     /gene="Psmd11"
                     /inference="alignment:Splign:2.1.0"
     exon            358..429
                     /gene="Psmd11"
                     /inference="alignment:Splign:2.1.0"
     exon            430..487
                     /gene="Psmd11"
                     /inference="alignment:Splign:2.1.0"
     exon            488..682
                     /gene="Psmd11"
                     /inference="alignment:Splign:2.1.0"
     exon            683..827
                     /gene="Psmd11"
                     /inference="alignment:Splign:2.1.0"
     exon            828..888
                     /gene="Psmd11"
                     /inference="alignment:Splign:2.1.0"
     exon            889..951
                     /gene="Psmd11"
                     /inference="alignment:Splign:2.1.0"
     exon            952..1077
                     /gene="Psmd11"
                     /inference="alignment:Splign:2.1.0"
     exon            1078..1113
                     /gene="Psmd11"
                     /inference="alignment:Splign:2.1.0"
     exon            1114..1165
                     /gene="Psmd11"
                     /inference="alignment:Splign:2.1.0"
     exon            1166..1632
                     /gene="Psmd11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcggcggcc gcggccgggg acggtgtgag agcggtaaga tggcggccgc agcggtggta
       61 gagttccaga gagctcagtc tctactcagc actgaccggg aggcctccat cgacatcctc
      121 cactccatcg tgaagcgtga cattcaagaa aatgatgagg aggcagtcca ggtcaaagag
      181 cagagcatcc ttgaactggg gtctctcctg gcgaagactg gacaagctgc tgagcttgga
      241 ggactcctga agtatgtacg acctttcttg aattccatca gtaaagctaa agcagctcgt
      301 ctggtccggt ctcttcttga tctgtttcta gatatggaag cagctacagg gcaggaggtc
      361 gagctatgtt tagaatgcat cgaatgggcc aaatcagaga aaagaacctt cttacgccaa
      421 gcattggagg caaggctggt gtctttgtat tttgatacca agaggtacca ggaagcatta
      481 catttgggtt ctcagctgct tcgggagttg aaaaagatgg atgataaagc tcttttggtt
      541 gaagtacagc ttttagaaag caaaacttac catgctctga gtaatctgcc gaaagcccga
      601 gctgccttaa cctctgctcg aaccacagca aatgctatct actgcccccc taaattgcag
      661 gccactctgg acatgcagtc aggtattatt catgcagcag aggagaagga ctggaaaact
      721 gcatactcgt acttctatga ggcattcgaa ggctatgact ccatcgatag ccccaaggcc
      781 atcacatctc tgaagtacat gttgctgtgc aaaatcatgc tcaacacccc agaagatgtc
      841 caggctttgg tgagcggaaa gcttgcactt cggtatgcag ggaggcagac agaagcattg
      901 aaatgtgtgg ctcaagctag caagaacaga tcactggcag attttgaaaa ggccctgaca
      961 gactacaggg cggagctccg ggacgaccca atcatcagca cacatttggc caagttgtac
     1021 gataacttac tggaacagaa tctgatccgg gtcattgaac ctttctcccg agtacagatc
     1081 gaacacatat ctagcctcat caaactctcc aaggccgacg tggaaagaaa attatcacag
     1141 atgattcttg acaagaagtt tcatgggatt ttggaccagg gggagggtgt cctgatcatt
     1201 ttcgatgaac ccccagtaga taaaacttat gaagctgctc tggaaacaat tcagaacatg
     1261 agtaaagtag tagactccct ctacaacaaa gccaagaagc tgacataggt gagtgctggc
     1321 cccgggacac agggccgggc agcgctgtct tctgcctgtc gacactggac accgtctggt
     1381 cctcacggct tccccgattg acactgctct gtcttctctt gcagagttgg atctgtagcg
     1441 gtcctttgga gagtgtgtgt ggcgggagag tgaacccttg gggaaatgct aggagattct
     1501 tttctttctg ttctactttt cgctcggaaa gtttttaacc ctcattggtg catctgtatc
     1561 cagcgatagg cggccggttc tcatgtaatc agcactggcc aacatgggag tggggaaatt
     1621 gcttaaaaaa aa
//
