LOCUS       XM_039104795             953 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus proteasome 26S subunit, ATPase 3
            (Psmc3), transcript variant X1, mRNA.
ACCESSION   XM_039104795
VERSION     XM_039104795.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086021) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..953
                     /gene="Psmc3"
                     /note="proteasome 26S subunit, ATPase 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 42 long SRA reads"
                     /db_xref="GeneID:29677"
                     /db_xref="RGD:61905"
     CDS             179..883
                     /gene="Psmc3"
                     /codon_start=1
                     /product="26S proteasome regulatory subunit 6A isoform X1"
                     /protein_id="XP_038960723.1"
                     /db_xref="GeneID:29677"
                     /db_xref="RGD:61905"
                     /translation="MNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFL
                     KLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ
                     RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARI
                     MQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEG
                     ILEVQAKKKANLQYYA"
     polyA_site      953
                     /gene="Psmc3"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ggtgtgaaca aagactccta tctgatcctg gagaccctgc ccaccgaata tgactctcgg
       61 gtgaaggcca tggaggtgga cgagcggccc acagagcaat acagtgacat tggcggcctg
      121 gacaagcaga tccaggagga cttcttcctg gcagctggtg gaagccattg tcctgcctat
      181 gaaccacaaa gagaagtttg agaacttggg tatccagccc ccaaaaggag tgctgatgta
      241 tgggccgcct ggtacaggga agactctcct cgcccgagcc tgtgctgctc agaccaaggc
      301 caccttcttg aagctggcag gccctcagct ggtgcagatg tttattggag atggcgccaa
      361 gctggtccgt gatgcttttg ccctggccaa ggagaaggca ccatctatta tctttataga
      421 tgagttggat gccattggca ccaagcgctt cgacagtgaa aaggcagggg accgagaggt
      481 gcagaggacc atgctagagc tcctgaacca gctggatggc ttccagccca acacccaagt
      541 gaaggtaatt gcagccacta acagggtgga catcctggac cctgccctgc tccgctcagg
      601 acgcctagac cgcaagattg agtttccaat gcccaatgag gaggcccgag ccagaattat
      661 gcagatccac tcacggaaga tgaacgtcag tcctgatgtg aactatgaag agctggctcg
      721 ctgcactgat gacttcaatg gggcccagtg caaggccgtg tgtgtggagg cgggtatgat
      781 cgcactgcgc aggggtgcca cggagctcac tcacgaggac tacatggagg gcatcctgga
      841 ggtgcaggcc aagaagaaag ccaacctgca gtactatgcc tagggacacc tctagtctgt
      901 ctgctggtcc gggggctacg gttgataata aagggggttt ttgttctttg cca
//
