LOCUS       NM_001008217             908 bp    mRNA    linear   ROD 20-OCT-2024
DEFINITION  Rattus norvegicus proteasome 20S subunit alpha 7 (Psma7), mRNA.
ACCESSION   NM_001008217 XM_342598
VERSION     NM_001008217.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 908)
  AUTHORS   Wu,W., Sahara,K., Hirayama,S., Zhao,X., Watanabe,A., Hamazaki,J.,
            Yashiroda,H. and Murata,S.
  TITLE     PAC1-PAC2 proteasome assembly chaperone retains the core
            alpha4-alpha7 assembly intermediates in the cytoplasm
  JOURNAL   Genes Cells 23 (10), 839-848 (2018)
   PUBMED   30133132
REFERENCE   2  (bases 1 to 908)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   3  (bases 1 to 908)
  AUTHORS   Buschow,S.I., van Balkom,B.W., Aalberts,M., Heck,A.J., Wauben,M.
            and Stoorvogel,W.
  TITLE     MHC class II-associated proteins in B-cell exosomes and potential
            functional implications for exosome biogenesis
  JOURNAL   Immunol Cell Biol 88 (8), 851-856 (2010)
   PUBMED   20458337
REFERENCE   4  (bases 1 to 908)
  AUTHORS   Sasaki,K., Hamazaki,J., Koike,M., Hirano,Y., Komatsu,M.,
            Uchiyama,Y., Tanaka,K. and Murata,S.
  TITLE     PAC1 gene knockout reveals an essential role of chaperone-mediated
            20S proteasome biogenesis and latent 20S proteasomes in cellular
            homeostasis
  JOURNAL   Mol Cell Biol 30 (15), 3864-3874 (2010)
   PUBMED   20498273
REFERENCE   5  (bases 1 to 908)
  AUTHORS   Fricke,B., Heink,S., Steffen,J., Kloetzel,P.M. and Kruger,E.
  TITLE     The proteasome maturation protein POMP facilitates major steps of
            20S proteasome formation at the endoplasmic reticulum
  JOURNAL   EMBO Rep 8 (12), 1170-1175 (2007)
   PUBMED   17948026
REFERENCE   6  (bases 1 to 908)
  AUTHORS   Farkas,R.H., Qian,J., Goldberg,J.L., Quigley,H.A. and Zack,D.J.
  TITLE     Gene expression profiling of purified rat retinal ganglion cells
  JOURNAL   Invest Ophthalmol Vis Sci 45 (8), 2503-2513 (2004)
   PUBMED   15277470
REFERENCE   7  (bases 1 to 908)
  AUTHORS   Apcher,G.S., Maitland,J., Dawson,S., Sheppard,P. and Mayer,R.J.
  TITLE     The alpha4 and alpha7 subunits and assembly of the 20S proteasome
  JOURNAL   FEBS Lett 569 (1-3), 211-216 (2004)
   PUBMED   15225636
REFERENCE   8  (bases 1 to 908)
  AUTHORS   Dong,J., Chen,W., Welford,A. and Wandinger-Ness,A.
  TITLE     The proteasome alpha-subunit XAPC7 interacts specifically with Rab7
            and late endosomes
  JOURNAL   J Biol Chem 279 (20), 21334-21342 (2004)
   PUBMED   14998988
REFERENCE   9  (bases 1 to 908)
  AUTHORS   Shultz,M.A., Zhang,L., Gu,Y.Z., Baker,G.L., Fannuchi,M.V.,
            Padua,A.M., Gurske,W.A., Morin,D., Penn,S.G., Jovanovich,S.B.,
            Plopper,C.G. and Buckpitt,A.R.
  TITLE     Gene expression analysis in response to lung toxicants: I.
            Sequencing and microarray development
  JOURNAL   Am J Respir Cell Mol Biol 30 (3), 296-310 (2004)
   PUBMED   12947022
REFERENCE   10 (bases 1 to 908)
  AUTHORS   Ni,R., Tomita,Y., Tokunaga,F., Liang,T.J., Noda,C., Ichihara,A. and
            Tanaka,K.
  TITLE     Molecular cloning of two types of cDNA encoding subunit RC6-I of
            rat proteasomes
  JOURNAL   Biochim Biophys Acta 1264 (1), 45-52 (1995)
   PUBMED   7578256
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CF976316.1 and CF110813.1.
            
            On Dec 16, 2004 this sequence version replaced XM_342598.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CF110813.1, FQ226344.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-283               CF976316.1         2-284
            284-908             CF110813.1         238-862
FEATURES             Location/Qualifiers
     source          1..908
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q43"
     gene            1..908
                     /gene="Psma7"
                     /note="proteasome 20S subunit alpha 7"
                     /db_xref="GeneID:29674"
                     /db_xref="RGD:61851"
     exon            1..159
                     /gene="Psma7"
                     /inference="alignment:Splign:2.1.0"
     CDS             64..810
                     /gene="Psma7"
                     /EC_number="3.4.25.1"
                     /note="proteasome subunit RC6-1; proteasome subunit alpha
                     7; proteasome (prosome, macropain) subunit, alpha type 7;
                     alpha-4; proteasome subunit alpha-4"
                     /codon_start=1
                     /product="proteasome subunit alpha type-7"
                     /protein_id="NP_001008218.1"
                     /db_xref="GeneID:29674"
                     /db_xref="RGD:61851"
                     /translation="MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLG
                     VEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPV
                     TVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANA
                     IGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLK
                     ILSPEEIEKYVAEIEKEKEENEKKKQKKAS"
     exon            160..286
                     /gene="Psma7"
                     /inference="alignment:Splign:2.1.0"
     exon            287..411
                     /gene="Psma7"
                     /inference="alignment:Splign:2.1.0"
     exon            412..534
                     /gene="Psma7"
                     /inference="alignment:Splign:2.1.0"
     exon            535..654
                     /gene="Psma7"
                     /inference="alignment:Splign:2.1.0"
     exon            655..717
                     /gene="Psma7"
                     /inference="alignment:Splign:2.1.0"
     exon            718..908
                     /gene="Psma7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggggcgctga aggtgagtgt gcgcttttga gcggcggcgg cttgagctcg cgcgtccgca
       61 gtgatgagct acgaccgcgc catcaccgtc ttctcgcccg acggccacct cttccaagtg
      121 gagtacgcgc aggaggcggt caagaagggc tccaccgcgg ttggtgttcg aggaagggac
      181 attgttgttc ttggtgtgga aaagaagtcg gtggccaagc tacaagatga aagaacggtc
      241 cggaaaatct gtgctctgga cgataatgtc tgcatggcct ttgcaggtct cactgccgat
      301 gcaaggatag tcatcaacag agccagggta gagtgccaga gccaccggct gaccgtggag
      361 gacccagtga ctgtggagta catcacccgc tacattgcca gtctgaagca gcgttacaca
      421 cagagcaatg ggcgcaggcc atttggtatc tctgccctaa ttgtgggttt cgacttcgat
      481 ggcaccccca gactctatca gactgacccc tcaggcacat accatgcttg gaaggccaat
      541 gccataggcc ggggtgccaa gtcggtgcgt gaatttctgg agaagaacta cacagatgat
      601 gccattgaaa cagacgatct gaccatcaaa ctggtgatca aggcgctgct ggaagtggtc
      661 cagtcaggtg gcaaaaacat tgaacttgct gtcatgaggc gggatcagcc cctcaagatt
      721 ctaagtcctg aagaaattga gaagtatgtt gctgaaatcg agaaggagaa agaagaaaat
      781 gaaaagaaga agcagaagaa agcatcttga gggcagcggt cagagcagct ttgagcctcc
      841 atccgagcaa acgggtgctg tgggccttgt ggccatttgt cggagtccaa taaactacta
      901 cgtttttt
//
