LOCUS       XM_017594059             969 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus proteasome 20S subunit alpha 3
            (Psma3), transcript variant X1, mRNA.
ACCESSION   XM_017594059
VERSION     XM_017594059.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017594059.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017594059.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..969
                     /gene="Psma3"
                     /gene_synonym="Psma3l"
                     /note="proteasome 20S subunit alpha 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 14 ESTs, 21 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 244 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:29670"
                     /db_xref="RGD:61844"
     CDS             259..801
                     /gene="Psma3"
                     /gene_synonym="Psma3l"
                     /codon_start=1
                     /product="proteasome subunit alpha type-3 isoform X1"
                     /protein_id="XP_017449548.1"
                     /db_xref="GeneID:29670"
                     /db_xref="RGD:61844"
                     /translation="MAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMY
                     VHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEI
                     EKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGRHEIVPKDVREE
                     AEKYAKESLKEEDESDDDNM"
ORIGIN      
        1 aggcctggaa gcgttctgtg gcctgccggg tcagcaccat gagctccatt ggcactgggt
       61 atgacctgtc agcctctaca ttctctcctg atggaagagt tttccaagtt gaatatgcta
      121 tgaaggctgt ggaaaacagt agctattggg atcagatgta aagatggtgt tgtgtttggg
      181 gtagaaaaac tagtcctttc taaactttat gaagaaggct ccaataaacg tcttttcaat
      241 gttgatcgac atgttggaat ggcagtggca ggtttgttgg cagatgctcg ttccttggca
      301 gacatagcaa gagaagaagc gtccaacttt aggtctaact ttggctataa cattcctcta
      361 aaacatcttg cagacagagt ggccatgtat gtacacgcgt atacactcta cagtgctgtt
      421 agaccttttg gctgcagttt catgttgggg tcttacagtg tgaatgatgg tgcacagctc
      481 tatatgatcg atccatcagg tgtttcatat ggttactggg gctgtgccat tggcaaagcc
      541 aggcaagctg caaagacaga aatagaaaag cttcagatga aggaaatgac ctgccgtgat
      601 gtagttaaag aagttgcaaa aataatttac atagtacatg atgaagttaa ggataaagct
      661 tttgaactag agctcagctg ggttggtgaa ttaactaaag gaagacatga aattgttccc
      721 aaagacgtaa gagaggaagc agagaaatat gccaaggaat ctttgaagga agaagatgaa
      781 tcagatgacg acaatatgta acatttcacc atcctctggt gtccatttct gtgacagttg
      841 catatggcta gcaccatgga ttatatatac ccactgacca attttcatta aattttgtct
      901 tataaacatt gttgggtaat tgaggatatc tgcgttatat taaaatgtag attcatgttt
      961 gattagaaa
//
