LOCUS       NM_001134881            4791 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus pleckstrin and Sec7 domain containing 4 (Psd4),
            mRNA.
ACCESSION   NM_001134881 XM_001053201
VERSION     NM_001134881.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4791)
  AUTHORS   Ueda,T., Hanai,A., Takei,T., Kubo,K., Ohgi,M., Sakagami,H.,
            Takahashi,S., Shin,H.W. and Nakayama,K.
  TITLE     EFA6 activates Arf6 and participates in its targeting to the
            Flemming body during cytokinesis
  JOURNAL   FEBS Lett 587 (11), 1617-1623 (2013)
   PUBMED   23603394
REFERENCE   2  (bases 1 to 4791)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            [WARNING] On Oct 24, 2024 this sequence was replaced by
            NM_001134881.2.
            
            On Sep 11, 2008 this sequence version replaced XM_001053201.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            CDS exon combination :: SRR26643292.11432.1, SRR26643295.11779.1
                                    [ECO:0000331]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-118               JAXUCZ010000003.1  27535440-27535557
            119-351             JAXUCZ010000003.1  27536096-27536328
            352-363             JAXUCZ010000003.1  27542016-27542027
            364-1370            JAXUCZ010000003.1  27557386-27558392
            1371-1499           JAXUCZ010000003.1  27559792-27559920
            1500-1602           JAXUCZ010000003.1  27560145-27560247
            1603-1963           JAXUCZ010000003.1  27560654-27561014
            1964-2149           JAXUCZ010000003.1  27563714-27563899
            2150-2230           JAXUCZ010000003.1  27564333-27564413
            2231-2343           JAXUCZ010000003.1  27564539-27564651
            2344-2402           JAXUCZ010000003.1  27564842-27564900
            2403-2492           JAXUCZ010000003.1  27565047-27565136
            2493-2536           JAXUCZ010000003.1  27566201-27566244
            2537-2697           JAXUCZ010000003.1  27566511-27566671
            2698-2768           JAXUCZ010000003.1  27567703-27567773
            2769-2932           JAXUCZ010000003.1  27568003-27568166
            2933-3077           JAXUCZ010000003.1  27568585-27568729
            3078-3221           JAXUCZ010000003.1  27568957-27569100
            3222-4791           JAXUCZ010000003.1  27570281-27571850
FEATURES             Location/Qualifiers
     source          1..4791
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p13"
     gene            1..4791
                     /gene="Psd4"
                     /note="pleckstrin and Sec7 domain containing 4"
                     /db_xref="GeneID:311785"
                     /db_xref="RGD:1310289"
     exon            1..118
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     exon            119..351
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     exon            352..363
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     exon            364..1370
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     CDS             456..3479
                     /gene="Psd4"
                     /codon_start=1
                     /product="PH and SEC7 domain-containing protein 4"
                     /protein_id="NP_001128353.1"
                     /db_xref="GeneID:311785"
                     /db_xref="RGD:1310289"
                     /translation="MMGDHLRPMEFLNICLEDNLQPHPEAYPSEVHGHPGPSEPCQEH
                     TWPFDPPESARPDAHHGDSDVEPSHLGNRLVHGEASQAPASSRSLEDNSSLGSPQQNR
                     SSSTQVVFWAGILQAQMCVLDLEEELEKTEGLKAGLRCCIPPPSKDFLGDVGLKPSRP
                     KEDEDSGDDSSGSEEENQTWPKKKMPGSSPEWGAEEDSIFFDNPLFLESPCSDTSTEG
                     ECFSWGYPNSHLDMKTWPHRPQTLDSPLQEGTGLWTQENDLDLGSNTADHSRCSTPPF
                     PVPSYKMHPCLALGSTEGAPIVPPDQVGETSWEDDVGPGSPKAPSVDHELIQESDNFG
                     SDLRPATTHPVQPWGSQIPQSLSDLAPPLHEDLQDPSRPQKPLISQNGGERDAGCFQE
                     PMLCTLAPWGSQASLLEPSCPESGGRGSGPRPSPVSSQESSPQDQLHSLKWPQDTSHP
                     SLLEKDKSELSSLKKDETEEVPSLMQEAECEDTSRSEDASVTEHHVHLASAEGLPESP
                     MPPEEAQSPEEDWRPSPSREKMANSIRNDEGAWNLALRLYQLNGFRKSEVAAHLRKNN
                     DFSRAVAEAYLSFFQFEGQSLDRALRGFLQALVLSGETQERERILYQFSKRFHYCNPG
                     AFPSVDSVHTLTCAIMLLNTDLHGQNIGKSMSCQEFVTNLNGLQDGGNFPKELLKALY
                     WSIRSEKLEWAVDEEDAARPEKDQPSPSAGKISSPFLQLAQDPTMPTYKQGILARKMH
                     HDADGKKTPWGKRGWKMFHTLLRGMVLYFLKGEGQWLDGESLVGHMMDEPVGVHHSLA
                     SPATHYTKKPHVFQLRTADWRLYLFQAPTAKEMASWIARINLAAATHSAPPFPAAVGS
                     QRRFVRPILPMGPAQSSLEEQHRSHENCLDAASDDLLDLQRNLPERRGRSRELEEYRL
                     RKEYLEHEKTRYETYVQLLVARLHFPLKDLALWEDQLGNEADSCQEPRPSLKKSHSSP
                     SLHQDEAPTTAKVKRNISERRTYRKIIPKRNRNQL"
     exon            1371..1499
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     exon            1500..1602
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     exon            1603..1963
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     exon            1964..2149
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     exon            2150..2230
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     exon            2231..2343
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     exon            2344..2402
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     exon            2403..2492
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     exon            2493..2536
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     exon            2537..2697
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     exon            2698..2768
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     exon            2769..2932
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     exon            2933..3077
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     exon            3078..3221
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
     exon            3222..4791
                     /gene="Psd4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgggacgtg gagacaggca catgcgaagg gctcggctgc agtggcaaga attcgatctg
       61 acgtcctcct gaaggtgtct ccactgtggc tgcgccgtgc accggtcaag actagcaggg
      121 tataggccgg cttttgttcc cctaatatat gtgtccacca gtcctcagtt cacaacctgt
      181 atgtctaggt cgtgaggcca gcatcaaatt caagtgctga atatctccat tctcacttgc
      241 ctgcaaacct cattagccca gccccttccc caagccctaa ggtgattgga tgtaattaac
      301 atctaattgg atttctatgg ttcctctgcg gagaaacacc tcaaggtcaa ggctaggtat
      361 gaattcctac cttggcttgt ggacctaata attcatgaaa tgggattgtg aaaacaggtg
      421 ctaccaaggg cttctgctca actgtcactc tgtggatgat gggggaccac ctcagaccca
      481 tggaatttct caatatttgc ttggaagaca acctacagcc ccatccagaa gcatatccaa
      541 gtgaagtgca tggccatccg ggcccttctg aaccttgcca ggaacatact tggccatttg
      601 acccccctga atctgccagg cctgatgctc atcatggcga ctctgatgtg gaacccagtc
      661 acctgggaaa ccgcctggtg catggggagg ccagccaggc cccagcatca tcgaggtcac
      721 tagaggacaa cagctctctg gggagtccac agcagaaccg gagctcatcc acccaggtgg
      781 tattctgggc tggcatcctg caggcccaga tgtgtgtcct ggacctggag gaggagctag
      841 agaaaacaga gggactcaaa gcaggactca gatgctgtat tccaccgccc tctaaggact
      901 tccttggtga tgtgggcctg aaacccagtc ggcccaagga ggatgaagac tctggggatg
      961 acagcagtgg gtctgaggaa gagaaccaga cctggccaaa gaagaaaatg ccaggctcct
     1021 ccccagagtg gggtgctgag gaggacagca tcttctttga taatcccctc ttcctggaaa
     1081 gcccttgctc agacaccagc actgaaggag aatgcttttc ctggggctac ccgaattccc
     1141 acctagatat gaagacctgg cctcataggc ctcaaaccct ggattctcct ctccaagaag
     1201 gcacagggct ctggacgcaa gaaaatgatc tggatttggg gagcaacact gctgaccata
     1261 gtaggtgctc cacccctcca ttccctgtgc cttcctataa gatgcacccc tgcttggcct
     1321 taggatccac tgaaggagct cccatagtac ctcctgatca ggtgggtgag acttcttggg
     1381 aagatgatgt tggccctggc tcacctaaag caccctctgt agaccatgaa ttgatccagg
     1441 aatcagataa ctttggatct gaccttagac ctgccacaac acatcctgta cagccttggg
     1501 gctcacagat accccaaagc ctttctgacc tggccccacc cttacatgag gacctgcagg
     1561 atccttccag gccccagaag cctcttatct cccagaacgg aggtgagagg gatgctggct
     1621 gtttccagga gcccatgctc tgcaccttgg ccccctgggg gagccaagca tctttactgg
     1681 agcctagctg cccagaatct gggggcagag gctctggacc ccggcccagt cctgtgtctt
     1741 ctcaggagag cagtccacag gatcagctcc atagcctcaa gtggccacaa gatacctcac
     1801 acccttcgct cctggagaag gataaatcag aattgagttc cctgaagaaa gatgagacag
     1861 aggaagtccc aagcctgatg caggaggcag agtgtgaaga tacatccaga agtgaagatg
     1921 cttcagtcac cgagcaccat gttcacttgg cttctgcaga aggacttcct gagagcccca
     1981 tgcccccaga ggaagctcaa tccccagagg aagactggag gccatcacca tctagagaga
     2041 agatggctaa tagcatcaga aatgacgagg gggcttggaa cctagccttg cgcctctatc
     2101 aactgaatgg ttttcggaag tccgaagtgg ctgcacacct tcgcaagaac aatgacttca
     2161 gcagggctgt agccgaggcc tacttgtcct tcttccagtt cgaaggtcag agcctggacc
     2221 gagccctccg tggtttcctc caggccctgg tgctcagtgg agagactcag gagcgggaac
     2281 gaattctcta ccaattttcc aaacgcttcc attactgcaa tcctggagcc ttcccctcag
     2341 tagattctgt acacaccttg acctgtgcaa ttatgctcct taacacagac ttacatggac
     2401 agaacattgg aaagagcatg agctgtcagg aatttgtaac caacctgaat ggcctgcagg
     2461 atggtggaaa cttccccaaa gagctgctga aggctctcta ctggtctatc cgaagtgaga
     2521 agcttgagtg ggctgtagat gaagaagatg cagccagacc tgagaaagac cagccctctc
     2581 cctcagctgg caagataagc agccccttcc tgcagttggc tcaggacccc acgatgccca
     2641 cctataagca gggtatcctg gcacggaaga tgcatcatga tgctgatggc aagaagacac
     2701 catggggcaa acgaggctgg aagatgtttc acaccttact gagagggatg gtgctctact
     2761 tcctgaaggg agagggccag tggctggatg gggagagttt ggttggacat atgatggatg
     2821 aacctgtggg agtgcaccac tcgctagcca gcccagccac ccactacacc aagaagccac
     2881 atgtcttcca gcttcggact gcagactggc gtctctacct cttccaggca cccacggcca
     2941 aagaaatggc ttcctggatt gcacgaatca acctggcggc tgccacacac tcagcacctc
     3001 cctttccagc tgcagtgggc tcccagcgca gattcgtgag gcccatcctg cccatgggcc
     3061 cagcgcagag ctccctggag gagcagcatc gatcccacga gaactgcctg gatgctgcct
     3121 cagatgacct gttggatttg cagagaaacc tgccagagcg aaggggccgc agccgcgagt
     3181 tggaggagta ccgcttacgg aaggagtatc tggagcacga gaaaactcga tatgagacgt
     3241 acgtgcagct tctggtggcc cgcctacact tccctctgaa agacctggct ttgtgggaag
     3301 atcagcttgg gaacgaagct gatagttgtc aggagcccag gccaagcctg aagaagtccc
     3361 actcaagccc atccctgcac caggatgagg cccccaccac agccaaggtg aaacgtaaca
     3421 tctcagagcg cagaacctac cggaagatca ttcccaagag gaaccgcaac cagctgtgaa
     3481 gctgtcgccc tctcagatac tgactccggg gtagacctga gatgcagcct tatgtgccag
     3541 gaccatggtg aaggatgagg catctgtgcc tctgtactga aggatggggc tcatttccct
     3601 gtgtccccat tcctggctct tcagagatta aggttgagtg aggcagtcct ctctcctcta
     3661 agacacgggg cctgggtttc tgagatggcc tgaggcagtc taaccaagac tgctcactgg
     3721 ggacaatctt actttgggag ttaggtgacc tggcagaagt tggtccccaa agcatagaac
     3781 aggacctctt ggaaattcct aagcagcatc ttgtgaccta ggaagcaggg ttactctagc
     3841 ccagtagagc acagccttct accagactcc ttggcaggtt cagggctcag ggataccgtg
     3901 gggcaccgag cttctggtct tctggctgct ttatcctgca aacataagag ggctgcatgc
     3961 ctaattgtta atcagcagag cagagctgtg gcctgggcca ggctcaatag gagtgggggg
     4021 tggctctaga ggtctgtgga gaacacttgg aacaaggagt gtttgtttcc tgagagtaat
     4081 gagggtagca tttctagggt agaccactgt ggagggagag ggggtgaaca tggtgacagt
     4141 tctccttggg agtctgcctg gcagtgcaag tagagattgg aggcctgggt tctcactgcc
     4201 ttctgtagcc acccccaccc cacctccacc ctcaataccc ctcaacactg cattcctgag
     4261 ggatgtcagg acctatttct cattcccagg gcagctccca gacctttgct gccctgcctt
     4321 gggaaatccc cttggacttc tcttttggct tcttcccagg tatgcctgtt ctctagggga
     4381 ggccctggag actcagggac tggggctgtg cctgtgagga ggaggctggc ttgggggagc
     4441 agccacattg tctctgttca gccatgtgtg caaagaggct tctggccaac tgggagcctc
     4501 tgctgctcac cctttagctg acacgttgcc tctcctgctt cctgctgggt cacacatcct
     4561 cccttcaata atgcttgtag caactctaag cccttagagc tccacaaagt ggagctggtt
     4621 cttagcgcca gggaactctt tgactagggc ctggggctgg cccttgcacc caatgggtgt
     4681 gcaataaata gaacctacca aagaaacgtg cgtatgtgtg tgcgcatgcg tgcgtgtgtg
     4741 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg taagggggag t
//
