LOCUS       NM_001399210            2643 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus peroxiredoxin like 2C (Prxl2c), transcript
            variant 1, mRNA.
ACCESSION   NM_001399210 XM_006253495
VERSION     NM_001399210.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2643)
  AUTHORS   Zhang,B., Wu,J., Cai,Y., Luo,M., Wang,B. and Gu,Y.
  TITLE     AAED1 modulates proliferation and glycolysis in gastric cancer
  JOURNAL   Oncol Rep 40 (2), 1156-1164 (2018)
   PUBMED   29901208
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Jan 4, 2022 this sequence version replaced XM_006253495.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.53457.1,
                                           SRR26360186.334071.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-218               JAXUCZ010000017.1  817969-818186
            219-287             JAXUCZ010000017.1  818329-818397
            288-341             JAXUCZ010000017.1  820464-820517
            342-447             JAXUCZ010000017.1  820658-820763
            448-579             JAXUCZ010000017.1  828891-829022
            580-2643            JAXUCZ010000017.1  833128-835191
FEATURES             Location/Qualifiers
     source          1..2643
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p14"
     gene            1..2643
                     /gene="Prxl2c"
                     /gene_synonym="Aaed1"
                     /note="peroxiredoxin like 2C"
                     /db_xref="GeneID:498685"
                     /db_xref="RGD:1589650"
     exon            1..218
                     /gene="Prxl2c"
                     /gene_synonym="Aaed1"
                     /inference="alignment:Splign:2.1.0"
     CDS             27..707
                     /gene="Prxl2c"
                     /gene_synonym="Aaed1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     thioredoxin-like protein AAED1; AhpC/TSA antioxidant
                     enzyme domain containing 1"
                     /codon_start=1
                     /product="peroxiredoxin-like 2C isoform 1"
                     /protein_id="NP_001386139.1"
                     /db_xref="GeneID:498685"
                     /db_xref="RGD:1589650"
                     /translation="MAAPVTRQVSGCAGRVPSPTGSDTERGQPLAAAVAELPVLDASG
                     RRVTFGALFRERRAVVVFVRHFLCYVCKEYVEDLAKIPKSVLQEADVTLIVIGQSSYH
                     HIEPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEISSSGQSPHIKSNLLSGSLQSLWR
                     AVTGPLFDFQGDPAQQGGTLILGPGNNIHFVHRDRNRLDHKPINSVLQLVGVQPVNFL
                     SRPAVIHV"
     exon            219..287
                     /gene="Prxl2c"
                     /gene_synonym="Aaed1"
                     /inference="alignment:Splign:2.1.0"
     exon            288..341
                     /gene="Prxl2c"
                     /gene_synonym="Aaed1"
                     /inference="alignment:Splign:2.1.0"
     exon            342..447
                     /gene="Prxl2c"
                     /gene_synonym="Aaed1"
                     /inference="alignment:Splign:2.1.0"
     exon            448..579
                     /gene="Prxl2c"
                     /gene_synonym="Aaed1"
                     /inference="alignment:Splign:2.1.0"
     exon            580..2643
                     /gene="Prxl2c"
                     /gene_synonym="Aaed1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaccagagcg gtcgccctcc tccgcgatgg ccgcgccggt gacgcggcag gtcagcggct
       61 gcgcaggccg ggtcccgagc ccgactggct cggacacaga gcgcgggcag ccgctagcgg
      121 ccgccgtagc ggagctgccg gtgctggacg cgtctgggag acgggtgacg ttcggagcgc
      181 tgttccgaga gaggcgagcg gtggtggtgt tcgtaaggca tttcttgtgt tacgtctgta
      241 aagaatatgt cgaagatctg gccaaaatcc ccaagagcgt cctccaagaa gcagatgtca
      301 ccctcatagt gattggacag tcgtcatacc atcatattga gcctttctgc aaactgactg
      361 gatattctca tgaaatctat gttgatcctg agagagaaat ttataagaga ttgggaatga
      421 aaagaggtga agaaatttcc tcctctggac agagccccca cataaagtcc aacctgctct
      481 cgggaagcct tcagagcctg tggcgggcag tcactggccc gctttttgat ttccaaggag
      541 acccagctca gcaaggagga accctcattt taggtccagg taacaacatc cactttgtgc
      601 accgagacag gaataggctg gatcacaaac ccataaactc tgtcttacag cttgtggggg
      661 ttcaaccggt gaacttcttg agcagacctg cagtcatcca cgtgtgactt cacgtgggac
      721 cttccacttg tgaatgggcc cttgagacat gaaccaaaat gccaggcacc acggctgcac
      781 ggggttatga aacacagagc ttatgtgcct agagaactac ctgctgaggg gcatcagctg
      841 tcaggaatgg aatagacagt ttatatttta tagcttctat aattttatac aaaatatact
      901 aaagagtcaa atgttataaa actattacta ccattgttaa tatcatttta tgaatatcca
      961 gtcttttggc aactacaata taagaaggga gtgctgggaa gatcactcag tggttaagag
     1021 tgcctgcttc tcttgcagaa gacccaggac ccaggtttgg tccccaaaac ccacatggta
     1081 actcacaatt gtctgtcact ccaattccat gggatctaac acctatggcc tcgggcacca
     1141 ggtacacatg tggtacacat gcatacacgt agacaacact catacacata aaacaataag
     1201 taaatcttct aagaaataca tatgtgtgtg tgtgtgtagg ggagggaagt gaagaagggg
     1261 ctagatatga tggcataggc ttgtaatcct agccctgaga aatggagaca ggggtgcagc
     1321 ctgagctgca tagagagaga gcctctctga gaaaaacggt cagttaacgg aaggaggaat
     1381 gcatagagaa aatcaaaagc aactcaagaa aagttgcata cataagtata accacatatg
     1441 aacatgtacc tttttttttt tttgaatgct tggagaaaaa atggtaaaca cagaacagca
     1501 ctgccaatag gcctgtgtgt gtctgtggtg aaagtatgga tatttgtttg ctttccaagc
     1561 tctgtatctc acgatcttgg ctgagttggg ggtgggtcag gaaagaatct ttaaacatta
     1621 aagtgcaaat gcctgcctat gttaaactcc ttgcaggtgc aggtgatttc ttgcacagag
     1681 gttgcctccc aagtgaggat ttgttgaacc tcttacggac aacagaatgc ctggtcagca
     1741 cacacccact acctgttacc ctaggattgt tttagtggaa taagtttggt ttgggggcca
     1801 tgctgggaat aaaaaccaaa gtttttatgc atctgagcac attctgttat cactgagcta
     1861 catccccatc cctgatcata ttttaaatat ctaggacaaa gggcgcctag aatgtatata
     1921 actctagatt cttttcctag cagtgctcgc acacgcacat gcgcgcgcgc acacacacac
     1981 acacacacac acacacacac acacacgcac atgcacaatg ctttttaaaa ggcaatatta
     2041 tgatttttgg aaaaaaacct ttgtaatgaa aatgcatgct atgtgatagt atgttagtcc
     2101 acacttagga tctcagtaca ggcagaggag tctgtgagac tggagtagat actgagctcc
     2161 tggccagtct gggttatgta tgatgaaatt atatttcaaa aataacaaaa agaagtgagc
     2221 agctagatat ggtgatgcgt gaggaggcag aggtaggagg gtctctgtga gttccaagac
     2281 agccagggct acatagagac cctgtctcaa aaacgaaaga tttaaagaca aatgtgcact
     2341 gggttaggtc atacatttgt agacatctgc tttttctcac ccccaaatct gtcttatttg
     2401 gaaaactatt ttcatatttt acctttcaag aatcttagtt ttgtcccaga aattcccatg
     2461 aaatgtatca taagatcaaa ccactggtaa tccttagtaa ctgtagtact actagggcct
     2521 tatactttta tataaaacat attaagtcac aaaactgttt caatgtattt ttacacgagt
     2581 atatacagac agtcatgttt ttaaatcaat aaaaagtgag tatttgcaga acttaaaatt
     2641 aaa
//
