LOCUS       XM_039091780            5138 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus periaxin (Prx), transcript variant X1,
            mRNA.
ACCESSION   XM_039091780
VERSION     XM_039091780.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091780.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5138
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5138
                     /gene="Prx"
                     /note="periaxin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 23 ESTs, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:78960"
                     /db_xref="RGD:619960"
     CDS             785..4936
                     /gene="Prx"
                     /codon_start=1
                     /product="periaxin isoform X1"
                     /protein_id="XP_038947708.1"
                     /db_xref="GeneID:78960"
                     /db_xref="RGD:619960"
                     /translation="MEARSRSAEELRRAELVEIIVETEAQTGVSGFNVAGGGKEGIFV
                     RELREDSPAAKSLSLQEGDQLLSARVFFENFKYEDALRLLQCAEPYKVSFCLKRTVPT
                     GDLALRPGTVSGYEMKGPRAKVAKLNIQSLSPVKKKKMVIGTLGTPADLAPVDVEFSF
                     PKFSRLRRGLKADAVKGPVPAAPARRRLQLPRLRVREVAEEAQVARMAAAAPPSRKAK
                     SEAEVATGAGFTAPQIELVGPQLPSAEVGVPKVSVPKGTPSTEAASSFALHLPTLGLG
                     APAAPAVEPPTTGIQVPQVELPTLPSLPTLPTLPCLDTQEGAAVVKVPTLDVAAPSVE
                     VDLALPGAEVEAQGEVPEVALKMPRLSFPRFGVRGKEATEAKVVKGSPEAKAKGPRLR
                     MPTFGLSLLESRPSGPEAAAESKLKLPTLKMPSFGISVAGPEVKAPKGPEVKLPKVPE
                     IKLPKAPEAAIPDVQLPEVQLPKMSDMKLPKIPEMAVPDVHLPEVKLPKVPEMKVPEM
                     KLPKIPEMAVPDVHLPDIQLPKVPEMKLPDMKLPKVPEMAVPDVHLPDIQLPKVPEMK
                     LPDMKLPKVPEMAVPDVRIPEVQLPKVSEVKLPKIPDMAVPDVRLPELQLPKMSEVKL
                     PKIPDMAVPDVRLPEVQLPKVSELKLPKVPEMTMPDIRLPEVQLPKVPDIKLPEIKLP
                     KVPEMAVPDVPLPELQLPKVPQVPDVHLPKVPEMKLPKVPEAQRKSAGAEQAEKTEFS
                     FKLPKMTVPKLGKVTKPGEAGIEVPDKLLILPCLQPEVGTEVAHVGVPSLSLPSVELD
                     LPGALGLEGQVQEAVSGKVEKPEGPRVAVGTGEAGFRVPSVEIVTPQLPTVEVEKEQL
                     EMVEMKVKPTSKFSLPKFGLSGPKAVKAEAEGPGRATKLKVSKFAISLPRARAGTDAD
                     AKGAGEAGLLPALDLSIPQLSLDAQLPSGKVEVAGAESKPKGSRFALPKFGAKGRDSE
                     ADVLVAGEAELEGKGWGWDGKVKMPKLKMPSFGLSRGKEAEIQDGRVSPGEKLEAIAG
                     QLKIPEVELVTPGAQETEKVTSGVKPSGLQVSTTRQVVAEGQEGAQRVSSLGISLPQV
                     ELASFGEAGPEIAAPSAEGTVGSRIQVPQVMLELPGTQVAGGDLLVGEGIFKMPTVTV
                     PQLELDVGLGHEAQAGETAKSEGGLKLKLPTLGAGGKGEGAEAQSPEAQHTFHISLPD
                     VELTSPVSSHAEYQVVEGDGDGGHKLKVRLPLFGLARAKEGIETGEKVKSPKLRLPRV
                     GFSQSESASGEGSPSPEEEEEGSGEGASGRRGRVRVRLPRVGLASPSKGSKGQEGDAA
                     SKSPVGEKSPKFRFPRVSLSPKARSGSKDREEGGFRVRLPSVGFSETAAPGSARIEGT
                     QAAAI"
ORIGIN      
        1 gccctcagga gaggcctatc cagtcctctc attttggttg ttgctgtctg tgtttttaag
       61 acattagccc atgagtctgg cctcagattc agtatatagc caaggaggtc ccaagataac
      121 cagggctaca cagagaaacc ctactttgtg gtttatttat gtacttttgt gaatggtttt
      181 ggtctgtttg tttattagtt tttgttgttg ttgttgtttc taagacaggg tttctttaag
      241 taaccttgac tatcttaagt agaacttgct ccgtagatca ggccggcctt gaactcatgg
      301 aaatctgcct gactctgcct cctgagggcc aggattaaag gtgcatgtag ggccaggatt
      361 aaaggtgcat gtccccaccg cccggcttgt ttttatcttt gttttttatt tttcaaagat
      421 ttgtttttat tattttcaat gatgtgtaag agtgtctgca cggagacaca agaatgcaga
      481 tagacgcctg ctgagtgaga ccagaggtat ttggctccat ggaactgaag tcactgatga
      541 ctagccccag acccaggagg cccaagtagc tggaactgac cctcaggcag caagacctca
      601 aaggaagagt gaaattccgg cttacagctg tacatcaccc cgagtggggc tcctgtcagg
      661 agaaaagacc atcacccagg aagcggctca gcggcagctg ctccatgagg agctgaagct
      721 ggtcctacag cagaaggagg agaggaaaca ggagcctgag ccccaggtga ctctctgcag
      781 agctatggag gccaggagcc gcagcgctga ggagctgaga cgagcggagt tggtggagat
      841 tatcgtggag acagaggcgc agaccggggt cagcggcttc aatgtagcag gcggcggcaa
      901 agaaggaatc tttgtccgcg agctgcgaga ggactcaccg gccgccaaga gcctcagttt
      961 gcaggaaggg gaccaacttc tgagcgcccg tgtgttcttt gagaacttca aatatgagga
     1021 tgcactacgc ctgctgcaat gtgccgagcc ctacaaggtc tccttctgct tgaagcgcac
     1081 tgtgcccacc ggggacctgg cactgcggcc cgggacggtg tctggatacg agatgaaggg
     1141 cccgcgggcc aaggtggcca agctgaacat ccagagtctg tcccctgtga agaagaagaa
     1201 gatggtgatt gggaccctgg ggacccctgc agatttggcc cctgttgacg tcgagttctc
     1261 ttttcccaag ttctcccgat tgcgtcgggg ccttaaagcc gatgctgtca agggacctgt
     1321 cccagctgcc cctgcccgac gacgtctcca gctgcctcgg ctacgtgtcc gagaagtagc
     1381 tgaagaggcc caggtagccc gaatggctgc tgctgctcct ccctctagga aggccaagtc
     1441 agaggctgag gtagccacag gggctggatt cacagcccct cagatagagc tagttgggcc
     1501 tcagctgcct agcgcagagg tgggtgtccc taaggtctca gttcccaagg gaaccccatc
     1561 aacagaggca gccagcagct ttgcccttca cctgccaacc cttgggctag gagccccagc
     1621 tgcaccggct gtggagcccc caaccacagg aatccaggtc ccgcaagtgg aactccccac
     1681 cctgccctct ttacccactc tgcccacact tccgtgccta gatacccagg aaggggctgc
     1741 agtggtcaaa gtccccaccc tggatgtggc agctccgtct gtggaggtgg acctggcttt
     1801 gccaggtgca gaggtggagg cccagggaga ggtacctgaa gtggctctca agatgccccg
     1861 tctcagtttc ccccgttttg gggttcgagg gaaggaagct actgaagcca aggtagtcaa
     1921 gggcagccct gaggccaaag caaagggtcc cagacttcga atgcccacct ttgggctttc
     1981 tctcctggaa tcccggccct ctggccctga agctgctgct gagagcaagc tgaagctacc
     2041 caccctcaag atgccctctt tcggcatcag cgtagctggg cctgaggtca aggcacccaa
     2101 agggcctgaa gtgaagctcc ccaaagttcc tgagatcaaa ctcccgaaag cgccagaggc
     2161 agccattcca gatgtgcaac tccccgaggt acagctgccc aaaatgtcag acatgaaact
     2221 tccaaagatc cctgagatgg ctgtacccga tgttcacctt ccggaagtga agctgcccaa
     2281 agtccccgag atgaaagtcc cagaaatgaa gcttccgaag atcccggaga tggccgtgcc
     2341 tgatgtacac cttccagata tacagctccc gaaagttccc gagatgaagc tcccagacat
     2401 gaagctcccg aaggtgcctg agatggccgt gcctgatgta caccttccag atatacagct
     2461 cccgaaagtt cccgagatga agctcccaga catgaagctc ccgaaggtgc ctgagatggc
     2521 cgtgcctgat gtacgaatcc cggaagttca gctacccaaa gtgtccgagg tgaagctccc
     2581 gaagataccg gacatggccg tacctgatgt tcgcctccca gagctgcaac tgcccaaaat
     2641 gtctgaggtg aagctcccga agataccgga catggccgta cctgatgttc gcctcccaga
     2701 agttcagcta cccaaagtgt cagagctgaa gctcccgaag gtgcctgaga tgaccatgcc
     2761 tgacattcgc ctcccggaag ttcagctgcc caaagtgcct gacattaaac ttccagaaat
     2821 aaaactaccc aaagtgcctg agatggccgt gcctgatgtc ccccttccag aactacagct
     2881 gcccaaagtg ccacaggtcc cagacgtgca tcttcccaaa gtgccagaga tgaagttgcc
     2941 caaggttcct gaggcacaga ggaaatctgc aggggcggag caggcagaaa agaccgaatt
     3001 tagcttcaag ttgcccaaga tgactgtgcc caagttgggg aaagtgacca agcctgggga
     3061 ggcaggtatt gaggttccag acaaactcct gatacttccc tgtctgcagc cagaggtggg
     3121 cactgaggtg gcccatgttg gtgtcccttc cctctctctc ccttctgtgg agcttgactt
     3181 gcctggggcc ctgggcctgg agggacaagt ccaagaagct gtctctggca aagtggagaa
     3241 gccagagggc cccagggtgg cagtagggac tggagaggcg ggcttccgcg tgccctctgt
     3301 ggagattgtc actcctcagc tgcccacggt tgaagtcgag aaagagcagc tagagatggt
     3361 ggagatgaaa gtcaaaccca cttccaagtt ctctctgccc aaatttggac tttcagggcc
     3421 caaagctgtc aaggcagagg cggaggggcc tgggcgagcc accaagctga aggtatccaa
     3481 gtttgccatc tcgcttccca gagctcgagc agggactgac gcggacgcga agggagctgg
     3541 ggaagcgggg ttgctgcctg ccctcgatct gtccatccca cagctcagcc tggatgctca
     3601 actgccctca ggcaaggtgg aggtagcagg ggctgagagc aagcctaaag ggtccagatt
     3661 tgctctgccc aagtttgggg cgaaaggccg ggactctgaa gccgacgtac tggtggcagg
     3721 ggaggctgag ctggagggga agggttgggg ctgggacggg aaggtgaaga tgcccaagct
     3781 gaagatgcca tcttttgggc tgtcccgagg aaaagaagca gaaattcagg atgggcgtgt
     3841 cagcccagga gaaaagctgg aagccatagc tgggcagctt aagatccctg aggtggaact
     3901 ggtcacacca ggagctcagg agacagagaa ggtcaccagt ggagtgaagc catcaggcct
     3961 ccaggtgtcc accactaggc aggtggttgc agagggccag gagggggcgc agagggtgtc
     4021 ctcattaggt atctctttgc cccaggtgga actggccagc tttggggagg caggccctga
     4081 gatcgcagcc ccatctgcag agggcacagt aggctctagg atccaggtgc cacaggtgat
     4141 gctggagttg ccgggaaccc aggtggcagg gggtgatctg ttagtgggtg agggcatctt
     4201 caagatgccc acagtgacag tgccccagtt agagctggat gtggggttgg gccatgaagc
     4261 ccaggctggt gaaacagcca agagtgaggg cgggttaaag ctgaagttgc ccacactggg
     4321 ggcaggaggc aaaggagagg gtgctgaggc ccagagcccc gaggcccagc acaccttcca
     4381 catctcattg cctgacgtag aactcacatc accagtgagt agccacgctg agtaccaggt
     4441 ggttgagggc gatggggatg gcgggcacaa actcaaggtg cggctgcccc tgtttggtct
     4501 ggcaagggcc aaggaaggaa tagaaactgg agaaaaggtt aaaagtccaa agctcaggct
     4561 accccgagtg ggcttcagcc aaagtgagtc ggcctctgga gaaggctctc ccagtcctga
     4621 ggaggaggaa gaaggcagtg gggaaggggc ttccggtcgc cgtggtcggg tcagggtccg
     4681 cttgcctcgt gtaggcttgg cttccccttc taaaggctct aagggacagg agggtgatgc
     4741 ggcctccaag tccccagttg gggagaagtc ccccaagttc cgctttccta gggtgtcctt
     4801 aagccccaag gcccggagtg ggagtaagga ccgggaagaa ggtggattca gggtccgact
     4861 gcccagtgtg ggattttcag aaacagcagc tccaggctcc gccaggattg aggggaccca
     4921 ggctgctgcc atctgaagcc ctgggacagc tgtggattcc ccctcttgtc ttcccatccc
     4981 catccctgct ccccatttta tgtgtgacat tactagcact aatcctcaga gggcttgaag
     5041 gtgggcagct gactcaggca ggagcggtct gtgccacctc attggctgac gtgcctgtat
     5101 atcatgccaa gctctgtgaa taaaataatt caaaagtt
//
