LOCUS       NM_001309463            4342 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus proline-rich transmembrane protein 3 (Prrt3),
            mRNA.
ACCESSION   NM_001309463 XM_003749809 XM_003753930
VERSION     NM_001309463.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On or before Jun 5, 2015 this sequence version replaced
            XM_003749809.3, XM_003753930.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.24576.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840110 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-62                JAXUCZ010000004.1  148205883-148205944 c
            63-1118             JAXUCZ010000004.1  148201061-148202116 c
            1119-1274           JAXUCZ010000004.1  148200717-148200872 c
            1275-4342           JAXUCZ010000004.1  148196800-148199867 c
FEATURES             Location/Qualifiers
     source          1..4342
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..4342
                     /gene="Prrt3"
                     /gene_synonym="RGD1562419"
                     /note="proline-rich transmembrane protein 3"
                     /db_xref="GeneID:502873"
                     /db_xref="RGD:1562419"
     exon            1..62
                     /gene="Prrt3"
                     /gene_synonym="RGD1562419"
                     /inference="alignment:Splign:2.1.0"
     exon            63..1118
                     /gene="Prrt3"
                     /gene_synonym="RGD1562419"
                     /inference="alignment:Splign:2.1.0"
     CDS             119..3055
                     /gene="Prrt3"
                     /gene_synonym="RGD1562419"
                     /codon_start=1
                     /product="proline-rich transmembrane protein 3 precursor"
                     /protein_id="NP_001296392.1"
                     /db_xref="GeneID:502873"
                     /db_xref="RGD:1562419"
                     /translation="MAPSPQACASPLLLLLLPCLGAGPALVRGLPRPLENSEPHVIPS
                     EPRTFDLFWEKLDNESSRHSGTPQAHAEGPKRPADSPLGPALHGPKVAPGVVQGERLL
                     RADDLQLARALTSQGWTGPPDSQELLETEAPEPHPMGAPHLTLVPTTPSFQLTVATLD
                     TASQKPGGPAGQQPPRDEGLMAKAKTHTQALPWGYQGSPHILVPETGAVRTLVLGKQG
                     GHEQGLQEAVQGPLLTQQDPATPEVGSTPPVEAPVEVKSTPEPGTQLDRALARSLPLP
                     EGLPAEPSKKGGAGDTWEVSSLGPQPEQTDHHGGQDSPAPPPIPPAASDISDGHLRPA
                     IASMNGVDPISPQRVRGAMEAPGTPKSFIPDLLNSAQAANGTESPMRALQPDEAEEWP
                     GRPQSHPPAPPVQAPSTSRRGLVKVTTQRALGQPPPPEPSASSMVPIPASSPPANATA
                     PPLRWGPLRRVLSFSWELHVYGVGVLFLLPALLALVTLAAALAGPRLALVAAVLVLVA
                     SGLRSAYMLTDPYGSQARLGVRAGLVLYNLPFPLLLTALAALTLLGLGAGLPQPLQKP
                     LLLGVVAPVHGAGLLATDLFSTSPVLNLLTQGLSCAWGASVALGTLCLCRRRLLEGPR
                     GWDASPGPRLLAVAGSLGLLASGLQLAASLWLYPGPGREGRFSWAWWGVHFWLRLLEL
                     TWALALALAALAATRPRPPTEHACWAKLLRLACPAPTGKSEVPERPNNCYAGPSGVGT
                     GGLDISKSLIRNAAGEGGLPATPGSGPWGSAASLGRGRPGGPGMSRGSVGPAPSLSEL
                     DLRPPSPINLSRSIDAALFREHLVRDSVFHRCGLRGLASSPPGGALRPRRGSQPDAEL
                     DGAGTSLLRGRCRSLSEVCLRTSLPQHVVNPPVGAAAAGTSGSSLDSFSKGSLKISWN
                     PWRHGLSSVDSLPLDELPSTVQLLPPPTPAPAPAPARAGEPQGEGQPRCKSSESHSAS
                     SDTIEL"
     exon            1119..1274
                     /gene="Prrt3"
                     /gene_synonym="RGD1562419"
                     /inference="alignment:Splign:2.1.0"
     exon            1275..4342
                     /gene="Prrt3"
                     /gene_synonym="RGD1562419"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcggagaga ggctgcaggg acgcgcgcaa ggtgaacgca tggctgcgga tgcagcgcgc
       61 agacttacca gtgaattcta gaggtcaagg gctgtacact caggcactga attagaccat
      121 ggcccccagc ccacaggcct gtgcatctcc gcttctgctc ttgctgctgc catgcctggg
      181 ggctggccct gccttggtca gaggccttcc cagacccctt gagaactcag aacctcacgt
      241 gattccgtca gagccacgta cctttgacct cttctgggag aagctggaca atgagagttc
      301 ccggcacagt ggcacccccc aggcccatgc tgaagggccc aagaggcctg cagactctcc
      361 cctcggacca gcactgcacg ggcccaaagt agcccccggg gtcgtccaag gtgaaagact
      421 cctaagagct gatgacctcc agctggcccg agcactcacc tcccaaggct ggacaggacc
      481 tcctgactca caggagcttc tggagacaga agcaccagaa ccccacccca tgggagcacc
      541 ccatctcact cttgtcccta caactcctag ctttcaactc acagtagcca cacttgacac
      601 tgcctcacag aagcctggag gcccagcagg acagcagcca cctagggatg aggggctaat
      661 ggccaaagcc aagacccaca cacaggcttt gccctggggt taccagggtt ctccccacat
      721 tctggtacct gagacgggtg ctgtgaggac actagtgttg gggaagcagg gtggacatga
      781 acagggcctc caggaggctg tccagggccc cctactcacc cagcaggatc cagcaacacc
      841 tgaggttgga tcaacacccc cagttgaggc cccagttgag gtgaagtcca ctccagagcc
      901 tggaacccag ctagaccggg cattggccag aagccttcct cttcctgagg ggctgccagc
      961 tgaaccctcc aaaaagggtg gagctgggga tacctgggaa gtcagctctc tgggacccca
     1021 acccgaacag actgaccacc atggaggaca agattcccca gcacccccgc ctataccacc
     1081 tgcagcctca gacatttctg atgggcacct aagaccagca atagcctcaa tgaatggagt
     1141 agaccccatc tccccgcagc gagtgagagg agcaatggag gccccaggaa cccccaagtc
     1201 cttcatccct gatctcctaa actctgctca agctgcaaat ggaacagaga gccctatgag
     1261 ggccctgcag ccagatgaag ccgaggaatg gccgggtcgc ccacaaagcc accctccagc
     1321 accccctgtc caggccccct cgacatctcg gcgtggtctc gttaaagtca ccacacagag
     1381 agctctgggg cagccacccc ctccggagcc ctcagccagc tccatggttc ccatcccagc
     1441 ttctagcccc ccagccaatg ccaccgcacc tcccctacgt tggggacccc tgcggcgggt
     1501 gctgagtttt tcctgggagc ttcatgttta tggggtggga gtgcttttcc tgcttccagc
     1561 attgttggca ttggtcacac tggcagccgc cctagcggga ccccgattgg cattagtggc
     1621 tgccgtgctg gtgttggtgg cttcagggct ccgatctgcc tacatgctca cggatcctta
     1681 tggctctcag gcccggctgg gagtacgtgc aggtctggtg ctatacaact tgcccttccc
     1741 cttgctactc actgctctgg cagcactcac cctgctgggc ttgggtgctg gtctgccaca
     1801 gcctctacag aagccgcttc tgctgggagt cgtggcaccg gtgcatggcg caggtttgct
     1861 ggctaccgac ctgttctcca ctagccctgt gctcaacctt ctgacacaag gcttatcttg
     1921 cgcctggggc gcgtcagtgg ctctgggcac actctgcctg tgccgtcgcc gcctgctgga
     1981 aggccctcgg ggctgggatg ccagtccagg cccccggctt ttggctgtgg cgggctcact
     2041 ggggctattg gccagtggtc tgcagttggc ggcctcgctc tggctgtacc cagggcctgg
     2101 ccgggagggt cgcttctcct gggcttggtg gggcgtgcac ttttggctgc gtctgctgga
     2161 gttgacctgg gcactggccc tggcgctggc cgccctggct gccactcgtc ccaggccgcc
     2221 cacagagcac gcttgctggg ctaagctgct gcgcctggct tgccccgcgc ccactggcaa
     2281 gagcgaagtt cccgagagac ccaataactg ctatgcgggg cccagtggcg tgggcacagg
     2341 cggcctggac atcagcaaaa gtctcatccg caacgctgct ggggaaggtg ggctccctgc
     2401 tacgcctggt tctggaccct ggggttcggc tgcatcgttg ggtcgtggtc gtccaggtgg
     2461 cccggggatg tcccgaggta gtgtggggcc tgcaccgtcg ctgagtgagc tggatctgag
     2521 gccaccgtcg cccatcaatt tgagccgcag catcgacgcc gcgctcttcc gggagcactt
     2581 ggttcgagac agtgtgttcc accgctgcgg tctccgtggc ttagcctcct cgccgccagg
     2641 gggcgccctg cggcctcgcc gcggcagcca gcccgacgct gagctcgatg gcgcgggcac
     2701 atcgctgctc cgaggccgct gccgctctct cagtgaggtg tgcttgcgca cgtcgctccc
     2761 gcagcacgtg gtgaatccgc ccgtcggcgc ggcggccgcg gggacttcgg gcagctccct
     2821 ggatagcttc tccaagggct cgctgaagat cagctggaac ccgtggcgtc acgggctgtc
     2881 gtccgtggac agtctgcccc tagatgaact gcccagcacc gtgcagctgc tgccaccacc
     2941 taccccagcc ccagcccctg ctcctgcccg ggccggggag cctcagggcg agggccagcc
     3001 gcgctgcaag tccagcgagt ctcacagcgc ctccagtgac actatagagc tctaagcagc
     3061 tatggggaga acctctcctc aatgtccaca tgaagtggct aagccaagac agttgagcat
     3121 ttgaaaaact ggccttccag ggcctccacc tgactgcagc tcctgggtac agccgggctt
     3181 gaatttacct gactcgtttt gattttcttt tttaatatct ctattttttt tcagcagata
     3241 ttttgcacaa aggccgtgag ttacacggaa cacagggtgg acgtgcatgg atttgaccat
     3301 gggggacagg gaccaggtac tcctgcccct ccagtgtgga gaggtgcact tcacttgtcc
     3361 ggattgactg tcctctttgt gccaaagaag taaatccttc cgattaggct catgcctccc
     3421 ctctggtcaa gccaggatct ctcctaacag gagagccagg agacccttcc ccacaggaat
     3481 caagagcttt ccagaggaat gtttcctccg gctttggtag gaacagccac ccctatctca
     3541 ctaaaaacct gtctgttgtg gggtccccac ctcctgtaat ccccacttta ggcctaaccg
     3601 gaaagcattc tgcccatttc ggaaatgaga acagctggtg ttcaacccag aaagaccaac
     3661 tcctaagctg gttcctgtta tctttttcct tcctccactc cttcctggtt tttatttaaa
     3721 aacatttttt ttgtagattt attttgtgtg tatgaacatt ttgcctgtgt ctagtatatg
     3781 catcacgtgt gtgacggtca gaaaatgagt ccagtccttt gggacagagg ttggatggct
     3841 gtgaggcact gcatgcttgc tcggaagtga acctggattc tctgcaaggg cagccatggc
     3901 tcctaacaac agacctctct ccagcccctt cccacccctt ttctatcatg gtagccctcg
     3961 atttcccagg gttgtagaaa acttcactca agtggcaatg gtgggttgtt aagactgagg
     4021 cttttccagt ttccaagacc gtcctttatt tcctgagatg aataaataag tcaatggctg
     4081 gggtgtgggc ggtgaacaca caacaggagc tggcagcatg cacctggcag gaggcctatg
     4141 ggggccccac ccctgagggg acgcctctca tccagagcag gggctgaagc ccacctgcag
     4201 cctccctggg gagaaactgt cttggaattc acacactgtg aggcccgcca gtcctctagg
     4261 caaagatctc aagacagcag cttcaggacc tctttttcat cccccagggc cactggggtc
     4321 ctgggctgct cagtaaggca gg
//
