LOCUS       XM_006233903            2897 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus proline rich transmembrane protein 1B
            (Prrt1b), mRNA.
ACCESSION   XM_006233903
VERSION     XM_006233903.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006233903.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006233903.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2897
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2897
                     /gene="Prrt1b"
                     /note="proline rich transmembrane protein 1B; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:102546892"
                     /db_xref="RGD:7582623"
     CDS             307..1053
                     /gene="Prrt1b"
                     /codon_start=1
                     /product="proline rich transmembrane protein 1B"
                     /protein_id="XP_006233965.1"
                     /db_xref="GeneID:102546892"
                     /db_xref="RGD:7582623"
                     /translation="MEAGPDAKTGDSPAGREDPPAAEEQRGAAQPSLPQLPRRPQLLE
                     EDAGPEEDPAEAAESSEPARGDPEPATASGEAGPGPKATGGTVPPIGFVGEPPPYAPP
                     DPKAVALLYPPFPQVPVLFQPAPGPAALYPPAPGPLFPPPGGASFPFPTYGSPVAGGP
                     APMQVEHRPLPKDFMMESVLVTLFCCLLTGLIAIVYSHETRAALGRGDLAQAEEASRK
                     ARSLVLFSLLFGVFVSTSWVIYVVVALYLP"
ORIGIN      
        1 cccgacacac ccaggtcccg gcaactccgc aaagggatcg atcaaggctg cacagagcgg
       61 accctgccct cggggtcctc tgcagctcta actatcccaa ggcaggagga cgccgggtgg
      121 gtgcgagcgc cagggcgcga gggagcgacg tgttgactca gccgtggaca aacaaggcgg
      181 ccaattatta acctgccgcg cggcgggcac caggaaacct gagcctccgc cgtccaccgg
      241 cttggggcgg acccaggcta caggtcctga gcagcacagc ccgcgggcac ccacgctgat
      301 cgggtcatgg aggcaggtcc cgacgccaag acaggcgata gccccgcagg ccgggaggac
      361 cccccagccg ccgaggagca gcgcggcgcc gcgcagccat cgctcccgca gctcccgcgc
      421 cgcccgcagc tgctggaaga agacgcgggg ccggaggaag atccggcgga ggccgcagaa
      481 agcagcgagc cagcccgggg ggacccagag cccgcgactg cgtccggcga ggcgggtccc
      541 ggtcccaagg ctactggcgg tactgttccg cccatcggct tcgtaggcga gcctccaccc
      601 tacgcgccgc cggaccccaa ggcagtggcg ctgctctatc cgcccttccc gcaggtgccg
      661 gtgctgttcc agcccgcgcc ggggcccgcc gccctctacc ctccagctcc cggcccactt
      721 ttcccacccc ctggcggagc ctccttccct ttccccacgt atggcagccc cgtggctggc
      781 gggcctgctc ccatgcaagt ggagcacagg cctctgccca aggacttcat gatggagtcg
      841 gtgctggtga ccctgttctg ttgcctgctc acagggctga ttgccattgt ctactcccac
      901 gagactcgag cagccctggg tcgaggtgac ctggcccagg cagaggaagc ctcaaggaag
      961 gctcgctcac ttgtgctctt cagcctgctc ttcggggtct tcgtgtctac cagctgggtc
     1021 atctacgtgg tggtggccct ctaccttccc tgaggccctg gacttacagg ctaggctgtg
     1081 ccctttctgg ggaccctggt ccccactgta gtagccagct gctgctcaca cagggcaaag
     1141 gggaggtggg ctcagaagcc ctgtccatga ggccttgggt gggatccacg tacagcctgg
     1201 aagtcttcct gggaagtctg ccttcacctt tactcctgga gaacaccgaa gactaaagct
     1261 ctcactgtct ccagaacctt ctggaaggac atggctacct ccagcacagg gatctggctg
     1321 cagtcaatat gcactctccc tgggagttcc tgcctggtct tacaccctgc ccatgctggg
     1381 agaggccagg acaactatgt gtgtaacaaa aggtggcaga acttcctgcc attacttcag
     1441 gacccagctt tttgtcttcc atctctgtgc agtcgagtcc caggactatt gctgccctct
     1501 tctctttact gctctactgg cccggtctga gggttttggc tttggcctct ccttgccctc
     1561 tcattctgtc tttacagtca cagctgcaaa taggtgaggc gggatgtgtt ggccgactga
     1621 gtgcatgtgc aatggctgtg ttcattcctg gcatcacgca gaggggggtg gtgctgcata
     1681 cttgtactcc taaaccttga gcagaaggaa cagaagttca ggtcatcttg gctacacagg
     1741 agctaaagga gtcctctcag gccagtatga gacacccgca gaacaaatcc cagctgtcct
     1801 cacatgctct ggggtcaagt ctggctggct gtgagaaaga ctgtgccaca ggggttccct
     1861 ctgtgagatg ggcacgagga aggactgtaa agcgaacagc tcccatgctg gccgaccttc
     1921 ccttcaggcc ctgctgtctg cagccacagc ccctggagcc ctagggacag ccccagagcc
     1981 tcctttaggg gcagagatgg aatacggaag tcaacggtga gcagcacgga gatgcaggac
     2041 acagggctgt tctggaattg gacctttgaa gtgcatggca gccataaaga ggagaaaaga
     2101 tttggggtgg agtctggtag atgcctcaaa agtacatcat agcacccacc agccaaccac
     2161 cattctcaca caccttttaa ataaatcact gtgaaccagg caggggtgac aaacatcttt
     2221 aatttcagca cttgggaggc agaggcaagc atatctctgt gagttcaagg ccagccttgg
     2281 tctacagaga aaccctgtca caaacaaaca agtcacccct ttgaaggggt gagtcacctg
     2341 gggaattgca ttgaagtgct gtgggcttgt aatggcagcc tgaagctctg catggggaat
     2401 gagcttcttg cctcctctgg gcttcaggac actggctggt gattccgaat gttaagagta
     2461 ctgccatcag gggctggaga gatggctcag cggttaagag cactggctgc tcttccagag
     2521 gtcctgagtt caaatcccag aaaccacatg gtggctcaca atcatctgta atgagatctg
     2581 atgccctctt ctggtgtgtc tgaagacagc tacagtgtac tcacatatat aaaataaata
     2641 catcttaaaa cggaaaaaga acaaaaagag gaaaaaattc accggataaa agggggatag
     2701 ttcatcaggt aaaggctgca tggtaggagg agagagctaa ctcctcaaag ttgtcccttg
     2761 agtgccacag gacaccaaag catgtgcatg cctacacaca cacacacaca cacacacaca
     2821 cacacacaca cacacacaca cggaaaagaa aaccagaaga gatgattctg cagctagaat
     2881 actatgaaaa acagaaa
//
