LOCUS       XM_006253297            6188 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus proline rich and Gla domain 3 (Prrg3),
            transcript variant X3, mRNA.
ACCESSION   XM_006253297
VERSION     XM_006253297.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006253297.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006253297.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6188
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6188
                     /gene="Prrg3"
                     /note="proline rich and Gla domain 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 39
                     ESTs, 6 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 37 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:293935"
                     /db_xref="RGD:1560309"
     CDS             319..1014
                     /gene="Prrg3"
                     /codon_start=1
                     /product="transmembrane gamma-carboxyglutamic acid protein
                     3 isoform X1"
                     /protein_id="XP_006253359.1"
                     /db_xref="GeneID:293935"
                     /db_xref="RGD:1560309"
                     /translation="MAVFLEAKNAHAVLKRFPRANEFLEELRQGTIERECMEEICSYE
                     EVKEVFENKEKTMEFWKGYPNAVYSVRDPSQSSDAMYVVVPLLGVVLLIVIALFIIWR
                     CQLQKATRHHPSYAQNRYLASRAGHNLPRVMVYRGTVHSQGESSGHRETGNNPQIVLG
                     PSRGGRTTVRLESTLYLPELSLSRLSSATPPPSYEEVTAPQEATSEEASVSYSDPPPK
                     YEEIVAASPSGDK"
ORIGIN      
        1 cagtgcttgg tgcgcgccac cgcccctccg cccagcttgc tggccttccc cacctaagcc
       61 ctaggtcgct tcagccggcc ccaccccttc ttcctctcct ggcccggagg cctggtgcgc
      121 ggtgcagcgc ggcaatcgcg gcctggctat cagggaaagg cggttttggc gctcgcaagt
      181 ggcacgccag gcgcggggcg cgaggccaga gctggctcgg ctgagtgcgg gggggagggt
      241 ctggcggagc ccccagagga aagcaggggc aggcaggggg tgccgaggca agtgagacag
      301 tgcagctgag gaagcatcat ggctgtgttc ctggaagcta agaatgccca tgcagtcctg
      361 aaacggttcc cccgtgcaaa tgagtttctg gaggagctac gtcaaggcac cattgagcgg
      421 gagtgcatgg aagagatctg cagttatgaa gaggtcaagg aagtatttga gaacaaagag
      481 aaaacgatgg agttttggaa gggataccca aatgcagtgt actcagttcg agatccctcg
      541 cagagctcag atgccatgta tgtggtggta ccccttctgg gggtagtctt gctgattgtc
      601 attgccttgt ttatcatctg gaggtgccag ctgcagaaag caacccgtca ccacccctcc
      661 tatgctcaga accggtacct agccagtcgc gctgggcaca acctcccccg agtcatggtg
      721 tacagaggca ctgtgcatag ccagggagag tcttctgggc accgtgagac gggcaataac
      781 ccacagatag ttctggggcc cagccgggga ggcagaacaa ctgtcaggct agagagtacc
      841 ctctacctcc ctgagctctc tctctccaga ctatccagtg ctacccctcc cccctcctat
      901 gaggaggtga ctgcacccca agaggccacc agtgaggagg ccagtgtctc ttacagtgac
      961 cctcccccaa agtatgaaga gattgtggca gccagcccca gtggagacaa gtagctgagc
     1021 acaggccctg gcctgtataa aagcctctgc cagaggtagc ctgcttcctt ttggacttct
     1081 gaaagactgt gccaccacaa aacagcctta gcctccttgt tgccaaataa ttccctaatt
     1141 gtggatttgt agaaagtaag ttggtagaaa cagttggtgt gtgtgtgtgt gtgtgtgtgt
     1201 gtgtgtgtgt gtgtctgtgt gtctgtgtgt caggggtcgg gggaggcata ggacaagtgc
     1261 atgacccccc cccatgggaa gagctacaga cttgagagtc caggtcttcc agacctcctc
     1321 cactgccacc aagtccccac tatcctgtcc tctcattagg gaccagcttc tcttatgcca
     1381 aaggacccat cccatagcat tgattgtggt tagaatgacc acaggttcat tctaaccctg
     1441 gggctgtggg actgtctggg tacccctgtc tgtctgggta tctaggtcac agagaagagg
     1501 gggtcaagcc agccatacag tttctctttt ctcaacagtt ccattcttcc tgttctcact
     1561 tatgagaaca gaaatgattg aactaggaac aaaacacaaa tcataacaaa taatgaacca
     1621 tagatgaaaa ctatagaccc tggaccatct ggagccctcc aaaagtcatc aattgaacag
     1681 accttggcac agccttcctc caacacccac ccctatgctc ctgaccaggg taaaatctat
     1741 gtggagagca acttggcagg aggacagggc aagggaagga ggagggaagg ggactgggtg
     1801 gcagagctcc tttttccaga ccaatcgagg ggcccacttg aactctgtca tcttgtttct
     1861 gatgtgtacc agctgtgtta aaccactccc cactggcatt agcccaggtg tagccctgga
     1921 gtactctgtt gtggggaaac tgataaccct tccttcatgg agtccagggc ccctccctgg
     1981 ctattacaga ctggcacaga gagctcaaga ttcttccttt gtgggattga tcaatccata
     2041 ggatagttaa aaccatgagc tccacctcct tccttggcac tgtgctatct ggctttgaag
     2101 ttttaggata tttttttctt tttctttttt tgttctttcc ttctttcttt ctttctttct
     2161 ttcttttttt tttttttgta aataggtgca ttgaacttga aatttagatt gtgattctcc
     2221 taatgatggt gcccttacag gaagaagttc cgaagtgtgt cttaaatttt tcttggtggg
     2281 ggagcccatg acctagggtc taaagcccac ctggggtttg ctttgctatg gccaggggct
     2341 gatctgtttt caatgaggct ttggaagaca gaggtgactt gctctttaac tgttagtgat
     2401 aaagtaaaag acactgttga taccatctct acccgcccca actgtattct cctggcctct
     2461 atgccaaatc atttttcctc tgtggtgctt aaaaatatgt agcacatttt tgtggggccc
     2521 aaaaagagtg catagcgtgg gtctgctggc aactgcaatg gtttccaacc cacagagttg
     2581 acaagcttcc ttctgtctaa acagccatcc aaggcagaca ctgagatgca ttccttgagc
     2641 acagtcctgc cttgaggccc cagatgactt ctagaggctg ttccagagct agtgactttc
     2701 ccaggggtgt gtttctagtc aggcttatat acttgcccca gtgtggctgc cagcttggat
     2761 aactcaaccc tgtggctccc ctacctctct ggcccattag aggctgaagg agctgatgct
     2821 tatgaagtgc ttgcagcacc atggaaccag tgaagtttgc ccacagcaag attcttttag
     2881 aaatgagtag tagctgtaag ggactggttt tagcagagga cttccaatgt ctctgatgtt
     2941 gagtgtcaac ctgaggagtc aatctctttc cattttacct tttgtgggcc ttcctctctc
     3001 cccagaggct cttcctcctt tccctccatt tggacctcct tcctatgttc cttcctgttt
     3061 ttattccttt gtgtctttcc tcttcccctt tccttccttc cagtttttct tttattcttt
     3121 cactccatta gtctcttgat attgcctttt cacatgaagg gatatggggc tcagaagtcc
     3181 cctgcttctt ttttcatgat agagattggg atcaatctca tctagacaca ttggagattc
     3241 atattgggaa ggtgaaagct atggggccag cccagcattt cccagcattt tgttaagctg
     3301 gtgccagact gtgacctgag atacatgaaa acagatttac cccaatgtga ctcatccccc
     3361 aggtagcaga gagtcaggca taggctccac tgaccagagt cgcagaaaat atgtcaagga
     3421 atgctcactg cctttggctt ctgttgaggt tttgctgttg agctgcctgg cagctagagg
     3481 ctagagatat gtagataaga gcaggatctg actcccaagg cctatagaga gtgacatgca
     3541 gcccctaggg gctgaggact ggatgtaggg tgagtgagaa gcagctcctt ggacgtggca
     3601 tgtgggctct aggtcaggtg cttcatagct ctcttccagg tgacttgtgc caaggcctct
     3661 gcaatggttt ttacagcata gtatttagta cctataatgg gcataattcc tcaaggtgca
     3721 tacttggctt ttatgaatgc cctgtacata acttttcgaa ctctgtcttt gtatagacat
     3781 tgacttgata caatgctaac actccagtag ccacattttg tttaaggtgt gtgtgtgtgt
     3841 gtgtgtgtgt gtgtgtgtgt gtgtgtgcgc gcgcgcgtgc gcatgtgggc acattgtttt
     3901 ttctcattgc ttctatgaaa tgatagttgg tgtgtgattc tatttgtccc aggagagatc
     3961 tgctctgaag aaaacactgt cttcatctgt ggggcctgga ttctgtggga tcccctccca
     4021 ctcacatgtc ttttgggcat ggtgacccct gcttcagctc ctatttctgt agatgtcagc
     4081 aactaaagga aatctaagca cacctgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     4141 tgtgtgtgtg tgtgtgtgtg cgtgtgcgtg tgcttgcatg atagagggag agagacagag
     4201 agacagagac agacagagac agagacggag gcagagaatg aatatgtgtg agacacagac
     4261 aggtagggaa tgagtgtgtg tgtgtgtgtg tgtgtgtgtg tgcgcgcgcg cgcgcgagtg
     4321 cacgcgcaca tagatgtgtg actattgact ttgagaatgg tgggggctag ttatttagat
     4381 atttttcact aaaaatgaaa aggctttaaa atatgactgt catttgtttt caaccaaaac
     4441 cctttataag actttttaaa caagaatggc aaccctgtct gtcccctccc agactgccca
     4501 tcactttggg ttttcaaaat gaaagcacaa gagaaagagt ggggcgcaca ggtgcctggc
     4561 atgtgcatat ccctgcacag ctgtgttgcg ccctggctga gcagttccac ccaggaaact
     4621 gaggcctctt ctgctacttg ccaattccac tgccattagt gtgaattcct tagggtgctc
     4681 cagcaaacaa gcatctgccc aattgtttag atattgtctt tttggtagtc caaacattag
     4741 ggatcaggga caacagtgat tttgtttaag cagttagagc cagatgcttc ctctctccca
     4801 ctggatggta actccccaga tcccagacag agttgacaga tcttttgaca agcaaatggt
     4861 atcccatgag aaaaccaaga aaaaaaaaaa gaaaaagaaa aacattgcca ctggattgtc
     4921 tttgaattca agtgagagga agatggcaga aagaggttga gtcgatcctg agctgctggg
     4981 ctgggctgct tttcagcttg acaagtgctg aagctccatt cacaggcatc actgattcca
     5041 aaacagtcac atcttccaca cagaaatctc ctaatactaa tcagtataat tagctaattt
     5101 tagattgctg caatcaaact gcttccaact acagtaaaag cccattaatt tgtgcacact
     5161 aattcagaac ttagaggaaa tccaaatttg agataattca cagtaactgc tcttcttgct
     5221 atataaaaat atttgaaagt gtcttccctt cattctgtct tcatatgtgt aacagaatcc
     5281 tgtttaaaat ggataccctt ttcaaaggag atgctcaagg taccaagggt cccttcattg
     5341 tgccttcagc ttggagttta gcagttcttg tgtgtaaggc tctttttgtg cagggtgatc
     5401 ccttgttctc tcttcattgt ggggatgtta gatattgcag cctttcactc catgtctgtg
     5461 cttatcctgt gaataaatta gtgtgtaatc ttgactgcaa tttaaacaca agtatgtgtc
     5521 tttgtaagtg ttctgtaaaa cagacgttgc actaactgac tgcctgctct cactcatccc
     5581 cgagacttca gatggtagag tgtctccttt cccaggctgt ggaaggagaa actgtctcta
     5641 gcaagaattt ctgtgacaaa gtctccaaat agcacacacc cttggctcca tgcctcagca
     5701 gttgtttcac tgtactgcta tctgactgct gaacgtgcct gcccttctcc agcctccagc
     5761 gagcataaag actgatatct aggattggga ccaaccctcc agctgctttt tgccacccaa
     5821 cctgtcttgc ctctctgatg ctgttttccc aggcctgaat ccacctgcta tttcactctg
     5881 tcattgtgaa tttgtgacag tggcaaccct gagcttctag aagtgcttac tgtgaaatgg
     5941 attaattttg gtaccatttg aaactgtgct catattcatg tgttgactga tgtcagctgg
     6001 ggcatctgtt cattcagtca tatgttggga tttcaaatgg ggcctggggg caacaaacca
     6061 acttgcttct gacctttctc aagcacgctt tctgtctccc tttttacaat tgttgaattt
     6121 agctgttaat tttgtctctt tctgtttaag aatataatgg ttaaaaataa agatcaaatg
     6181 gcatccaa
//
